mRNA_H-paniculata_contig28585.7785.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig28585.7785.1
Unique NamemRNA_H-paniculata_contig28585.7785.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig28585.7785.1 vs. uniprot
Match: A0A6H5JGS5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGS5_9PHAE)

HSP 1 Score: 158 bits (400), Expect = 2.080e-43
Identity = 79/94 (84.04%), Postives = 89/94 (94.68%), Query Frame = 1
Query:    4 KKKQVRKLLDKGSTDLNRGDKFGQTPLHIACHKEGLLGCLELLAAHNADLEALDANGNTALHSAAGSGAAAAAKFLLGQGLSVADRNKDGHTPL 285
            K+++ RKLL KG  D+NRGDKFGQTPLHIACH+EGLLGCL+LLAAH A+L+ALDANGNTALHSAAGSGAAAAAKFLLG+GLSVADRNKDGHTP+
Sbjct:   29 KQEKARKLLQKGCPDVNRGDKFGQTPLHIACHREGLLGCLQLLAAHEANLKALDANGNTALHSAAGSGAAAAAKFLLGRGLSVADRNKDGHTPM 122          
BLAST of mRNA_H-paniculata_contig28585.7785.1 vs. uniprot
Match: D7FI33_ECTSI (Ankyrin repeat protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI33_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 2.830e-26
Identity = 54/62 (87.10%), Postives = 60/62 (96.77%), Query Frame = 1
Query:  100 KEGLLGCLELLAAHNADLEALDANGNTALHSAAGSGAAAAAKFLLGQGLSVADRNKDGHTPL 285
            +EGLLGCL+LLAAH A+L+ALDANGNTALHSAAGSGAAAAAKFLLG GLSVAD+NKDGHTP+
Sbjct:   13 REGLLGCLQLLAAHEANLKALDANGNTALHSAAGSGAAAAAKFLLGCGLSVADKNKDGHTPM 74          
BLAST of mRNA_H-paniculata_contig28585.7785.1 vs. uniprot
Match: A0A662X0F1_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X0F1_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.100e-8
Identity = 36/87 (41.38%), Postives = 49/87 (56.32%), Query Frame = 1
Query:   22 KLLDKGSTDLNRGDKFGQTPLHIACHKEGLLGCLELLAAHNADLEALDANGNTALHSAAGSGAAAAAKFLLGQGLSVADRNKDGHTP 282
            +LLD+ + D N  +  G  P+H A +  G +  LE+L AHN D+  L    N+ALH AA     AA KFL+  G + A RN+ G TP
Sbjct:   42 RLLDEMNVDPNAKNDAGNLPIHTAAYY-GRVSFLEILLAHNVDINVLCPRENSALHFAAAQSREAAVKFLVNNGANPAKRNRSGRTP 127          
BLAST of mRNA_H-paniculata_contig28585.7785.1 vs. uniprot
Match: A0A0M8ZYZ1_9HYME (Transient receptor potential channel pyrexia (Fragment) n=1 Tax=Melipona quadrifasciata TaxID=166423 RepID=A0A0M8ZYZ1_9HYME)

HSP 1 Score: 58.2 bits (139), Expect = 1.090e-7
Identity = 38/90 (42.22%), Postives = 50/90 (55.56%), Query Frame = 1
Query:   16 VRKLLDKGSTDLNRGDKFGQTPLHIACHKEGLLGCLELLAAHNADLEALDANGNTALHSAAGSGAAAAAKFLLGQGLSVADRNKDGHTPL 285
            V +LL     ++N+ DK+G TPLHIA   E L  C+++L  H ADL A        LH A  +GA    K LL +G SV ++N  G TPL
Sbjct:  551 VTELLITWKANINKTDKYGYTPLHIAALNE-LSQCVDVLIQHGADLSAR----TKVLHCAIRAGAVEIVKLLLERGASVVEKNHMGETPL 635          
BLAST of mRNA_H-paniculata_contig28585.7785.1 vs. uniprot
Match: S7Q7K5_MYOBR (Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C n=1 Tax=Myotis brandtii TaxID=109478 RepID=S7Q7K5_MYOBR)

HSP 1 Score: 51.2 bits (121), Expect = 2.560e-5
Identity = 34/81 (41.98%), Postives = 49/81 (60.49%), Query Frame = 1
Query:   37 GSTDLNRGDKFGQTPLHIACHKEGLLGCLELLAAHNADLEALDANGNTALHSAAGSGAAAAAKFLLGQG---LSVADRNKD 270
            G+  +N  D  G+TPLH A   + + G L +L  H A+++A D  G TAL +AA +G  AA +FLL +G   L+V D NK+
Sbjct:  195 GAKIVNSRDAKGRTPLHAAAFADNVSG-LRMLLQHEAEVDATDHTGRTALMTAAENGQTAAVEFLLYRGKADLTVLDENKN 274          
BLAST of mRNA_H-paniculata_contig28585.7785.1 vs. uniprot
Match: G1P7K1_MYOLU (Ankyrin repeat domain 52 n=21 Tax=Boreoeutheria TaxID=1437010 RepID=G1P7K1_MYOLU)

HSP 1 Score: 51.2 bits (121), Expect = 2.940e-5
Identity = 34/81 (41.98%), Postives = 49/81 (60.49%), Query Frame = 1
Query:   37 GSTDLNRGDKFGQTPLHIACHKEGLLGCLELLAAHNADLEALDANGNTALHSAAGSGAAAAAKFLLGQG---LSVADRNKD 270
            G+  +N  D  G+TPLH A   + + G L +L  H A+++A D  G TAL +AA +G  AA +FLL +G   L+V D NK+
Sbjct:  761 GAKIVNSRDAKGRTPLHAAAFADNVSG-LRMLLQHEAEVDATDHTGRTALMTAAENGQTAAVEFLLYRGKADLTVLDENKN 840          
BLAST of mRNA_H-paniculata_contig28585.7785.1 vs. uniprot
Match: A0A8J6G805_MICOH (Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C n=1 Tax=Microtus ochrogaster TaxID=79684 RepID=A0A8J6G805_MICOH)

HSP 1 Score: 51.2 bits (121), Expect = 2.960e-5
Identity = 34/81 (41.98%), Postives = 49/81 (60.49%), Query Frame = 1
Query:   37 GSTDLNRGDKFGQTPLHIACHKEGLLGCLELLAAHNADLEALDANGNTALHSAAGSGAAAAAKFLLGQG---LSVADRNKD 270
            G+  +N  D  G+TPLH A   + + G L++L  H A++ A D  G TAL +AA +G  AA +FLL +G   L+V D NK+
Sbjct:  966 GAKIVNSRDAKGRTPLHAAAFADNVSG-LQMLLQHQAEVNATDHTGRTALMTAAENGQTAAVEFLLYRGKADLTVLDENKN 1045          
BLAST of mRNA_H-paniculata_contig28585.7785.1 vs. uniprot
Match: A0A8B7UL17_CASCN (LOW QUALITY PROTEIN: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C n=3 Tax=Euarchontoglires TaxID=314146 RepID=A0A8B7UL17_CASCN)

HSP 1 Score: 50.8 bits (120), Expect = 3.890e-5
Identity = 34/81 (41.98%), Postives = 49/81 (60.49%), Query Frame = 1
Query:   37 GSTDLNRGDKFGQTPLHIACHKEGLLGCLELLAAHNADLEALDANGNTALHSAAGSGAAAAAKFLLGQG---LSVADRNKD 270
            G+  +N  D  G+TPLH A   + + G L +L  H A++ A D  G+TAL +AA +G  AA +FLL +G   L+V D NK+
Sbjct:  392 GAKIVNSRDAKGRTPLHAAAFADNVSG-LRMLLQHQAEVNAADHTGHTALMTAAENGQTAAVEFLLYRGKADLTVLDENKN 471          
BLAST of mRNA_H-paniculata_contig28585.7785.1 vs. uniprot
Match: A0A6P3HEH7_BISBI (serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C isoform X2 n=5 Tax=Boreoeutheria TaxID=1437010 RepID=A0A6P3HEH7_BISBI)

HSP 1 Score: 50.8 bits (120), Expect = 4.000e-5
Identity = 34/81 (41.98%), Postives = 49/81 (60.49%), Query Frame = 1
Query:   37 GSTDLNRGDKFGQTPLHIACHKEGLLGCLELLAAHNADLEALDANGNTALHSAAGSGAAAAAKFLLGQG---LSVADRNKD 270
            G+  +N  D  G+TPLH A   + + G L +L  H A++ A D  G+TAL +AA +G  AA +FLL +G   L+V D NK+
Sbjct:  786 GAKIVNSRDAKGRTPLHAAAFADNVSG-LRMLLQHQAEVNATDHTGHTALMTAAENGQTAAVEFLLYRGKADLTVLDENKN 865          
BLAST of mRNA_H-paniculata_contig28585.7785.1 vs. uniprot
Match: U3KNQ2_RABIT (Ankyrin repeat domain 52 n=1 Tax=Oryctolagus cuniculus TaxID=9986 RepID=U3KNQ2_RABIT)

HSP 1 Score: 50.8 bits (120), Expect = 4.050e-5
Identity = 34/81 (41.98%), Postives = 49/81 (60.49%), Query Frame = 1
Query:   37 GSTDLNRGDKFGQTPLHIACHKEGLLGCLELLAAHNADLEALDANGNTALHSAAGSGAAAAAKFLLGQG---LSVADRNKD 270
            G+  +N  D  G+TPLH A   + + G L +L  H A++ A D +G TAL +AA +G  AA +FLL +G   L+V D NK+
Sbjct:  963 GAKIVNSRDAKGRTPLHAAAFADNVSG-LRMLLQHQAEVNATDHSGRTALMTAAENGQTAAVEFLLYRGKADLTVLDENKN 1042          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28585.7785.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A6H5JGS5_9PHAE2.080e-4384.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI33_ECTSI2.830e-2687.10Ankyrin repeat protein (Partial) (Fragment) n=1 Ta... [more]
A0A662X0F1_9STRA1.100e-841.38Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A0M8ZYZ1_9HYME1.090e-742.22Transient receptor potential channel pyrexia (Frag... [more]
S7Q7K5_MYOBR2.560e-541.98Serine/threonine-protein phosphatase 6 regulatory ... [more]
G1P7K1_MYOLU2.940e-541.98Ankyrin repeat domain 52 n=21 Tax=Boreoeutheria Ta... [more]
A0A8J6G805_MICOH2.960e-541.98Serine/threonine-protein phosphatase 6 regulatory ... [more]
A0A8B7UL17_CASCN3.890e-541.98LOW QUALITY PROTEIN: serine/threonine-protein phos... [more]
A0A6P3HEH7_BISBI4.000e-541.98serine/threonine-protein phosphatase 6 regulatory ... [more]
U3KNQ2_RABIT4.050e-541.98Ankyrin repeat domain 52 n=1 Tax=Oryctolagus cunic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig28585contigH-paniculata_contig28585:2733..3032 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-10_003330.1
Exons1
Model size300
Cds size300
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929868.9078846-CDS-H-paniculata_contig28585:2732..30321622929868.9078846-CDS-H-paniculata_contig28585:2732..3032Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28585 2733..3032 -
1691481046.7480793-CDS-H-paniculata_contig28585:2732..30321691481046.7480793-CDS-H-paniculata_contig28585:2732..3032Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28585 2733..3032 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig28585.7785.1prot_H-paniculata_contig28585.7785.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig28585 2733..3032 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig28585.7785.1

>prot_H-paniculata_contig28585.7785.1 ID=prot_H-paniculata_contig28585.7785.1|Name=mRNA_H-paniculata_contig28585.7785.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=100bp
RKKKQVRKLLDKGSTDLNRGDKFGQTPLHIACHKEGLLGCLELLAAHNAD
LEALDANGNTALHSAAGSGAAAAAKFLLGQGLSVADRNKDGHTPLVRFE*
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mRNA from alignment at H-paniculata_contig28585:2733..3032-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig28585.7785.1 ID=mRNA_H-paniculata_contig28585.7785.1|Name=mRNA_H-paniculata_contig28585.7785.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=300bp|location=Sequence derived from alignment at H-paniculata_contig28585:2733..3032- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGAAAAAAAAAACAGGTGCGAAAGCTTCTAGACAAGGGTAGCACAGACCT CAACCGCGGGGACAAATTCGGCCAGACCCCGTTGCACATCGCCTGCCATA AAGAGGGTCTTTTGGGGTGCCTTGAGCTCCTTGCGGCGCATAACGCCGAC CTCGAAGCCCTCGATGCCAATGGCAACACGGCGTTGCACTCCGCGGCGGG CTCTGGGGCGGCGGCTGCGGCGAAATTTCTGCTGGGACAAGGGCTATCGG TAGCGGATCGTAACAAGGATGGGCACACGCCGTTGGTGAGATTTGAGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig28585:2733..3032-

>mRNA_H-paniculata_contig28585.7785.1 ID=mRNA_H-paniculata_contig28585.7785.1|Name=mRNA_H-paniculata_contig28585.7785.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at H-paniculata_contig28585:2733..3032- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGAAAAAAAAAACAGGTGCGAAAGCTTCTAGACAAGGGTAGCACAGACCT
CAACCGCGGGGACAAATTCGGCCAGACCCCGTTGCACATCGCCTGCCATA
AAGAGGGTCTTTTGGGGTGCCTTGAGCTCCTTGCGGCGCATAACGCCGAC
CTCGAAGCCCTCGATGCCAATGGCAACACGGCGTTGCACTCCGCGGCGGG
CTCTGGGGCGGCGGCTGCGGCGAAATTTCTGCTGGGACAAGGGCTATCGG
TAGCGGATCGTAACAAGGATGGGCACACGCCGTTGGTGAGATTTGAGTGA
CGAAAAAAAAAACAGGTGCGAAAGCTTCTAGACAAGGGTAGCACAGACCT
CAACCGCGGGGACAAATTCGGCCAGACCCCGTTGCACATCGCCTGCCATA
AAGAGGGTCTTTTGGGGTGCCTTGAGCTCCTTGCGGCGCATAACGCCGAC
CTCGAAGCCCTCGATGCCAATGGCAACACGGCGTTGCACTCCGCGGCGGG
CTCTGGGGCGGCGGCTGCGGCGAAATTTCTGCTGGGACAAGGGCTATCGG
TAGCGGATCGTAACAAGGATGGGCACACGCCGTTGGTGAGATTTGAGTGA
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