prot_H-paniculata_contig28559.7779.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig28559.7779.1
Unique Nameprot_H-paniculata_contig28559.7779.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length314
Homology
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BLAST of mRNA_H-paniculata_contig28559.7779.1 vs. uniprot
Match: D7FTU3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTU3_ECTSI)

HSP 1 Score: 201 bits (511), Expect = 6.700e-55
Identity = 149/324 (45.99%), Postives = 173/324 (53.40%), Query Frame = 0 
Query:    1 RLPLQDAAPRLLHLVRFSWLLACANLALGRPAAAIRILSVAEHAYGARRSAWRKATLFFATSPRGGSG-------PAPLSHRSNSTQTPHAXXXXXXXXXXQMQANVPSGVRGGGDGRSFLSGRELGRDPVLAICRFMRGLAVLYGGDVTAAAEQMEECLELDPTCRHAAVCLAHISCFASIFTAGNPGKGREGXXXXXXXXXXXXXXXXXXXXGTRYHRWHPPNQRTQELLRVLALGVST---TAYNGVLRDGTTWRNREDGSGAARRGKGGSXXXXXXXXXXXXXEACLLLACVARAAGDAGGAVSMFRKALGLDPHCLEGV 314
            RLPL +AAPRLLHL+R SWLLA ANLALGR AAA R++SVAEHAYGARRSAWR+A+L  +T P G S        PAPL   + +T                      S   GGG     L     GRDP LA+CRF+RGL  L  GD+ AAA ++EE L+LDP  RHA VCLAHISCFAS   A                              T    W P ++RT ELLRVL+LG S    +    +L  G                + G      XXXXXX  EA +LLAC ARA G+AG AVSMFR+AL LDP CLE V
Sbjct:  261 RLPLSEAAPRLLHLLRMSWLLAVANLALGRAAAASRLVSVAEHAYGARRSAWRRASLLLSTRPTGASATYTAPPPPAPLHPLAPAT----------------------SKQGGGGSANGTLRXXXXGRDPALAMCRFLRGLGSLAQGDLEAAAGRLEESLDLDPRNRHATVCLAHISCFASASPATT----------------------------TTSLGWEPSDERTHELLRVLSLGSSAHFDSIEQEILLRGXXXXXXXXXXXXXXXXEAGRCMWRAXXXXXXV-EAWVLLACAARATGNAGEAVSMFRRALALDPQCLEAV 533
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BLAST of mRNA_H-paniculata_contig28559.7779.1 vs. uniprot
Match: A0A6H5L1V4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1V4_9PHAE)

HSP 1 Score: 187 bits (475), Expect = 1.100e-49
Identity = 151/324 (46.60%), Postives = 172/324 (53.09%), Query Frame = 0 
Query:    1 RLPLQDAAPRLLHLVRFSWLLACANLALGRPAAAIRILSVAEHAYGARRSAWRKATLFFATSPRGGSGP-------APLSHRSNSTQTPHAXXXXXXXXXXQMQANVPSGVRGGGDGRSFLSGRELGRDPVLAICRFMRGLAVLYGGDVTAAAEQMEECLELDPTCRHAAVCLAHISCFASIFTAGNPGKGREGXXXXXXXXXXXXXXXXXXXXGTRYHRWHPPNQRTQELLRVLALGVST---TAYNGVLRDGTTWRNREDGSGAARRGKGGSXXXXXXXXXXXXXEACLLLACVARAAGDAGGAVSMFRKALGLDPHCLEGV 314
            RLPL +AAPRLLHL+R SWLLA ANLALGR AAA RI+ VAEHAYGARRSAWR+A+L  +T P G S         APL H   +  + H                      G G             DP LA+CRF+RGL  L  GD+ AAA ++EE L+LDP  RHA VCLAHISCFAS   A                              T   RW P ++RT ELLRVL+LG S    +    +L  G                    XXXXXXXXXXXX EA LLLAC ARA G+AG AVSMFR+AL LDP CLE V
Sbjct:  281 RLPLSEAAPRLLHLLRMSWLLAVANLALGRAAAASRIVCVAEHAYGARRSAWRRASLLLSTRPTGASAAYTPXXXXAPL-HPLGAATSKHG---------------------GVGXXXXXXXXXXXXNDPALAMCRFLRGLGSLAQGDLEAAAGRLEESLDLDPRNRHATVCLAHISCFASASPA------------------------------TTSLRWKPSDERTHELLRVLSLGSSAHFDSIEQEILLRGXXXXXXXXXXXXXXXXX---XXXXXXXXXXXXVEAWLLLACAARATGNAGEAVSMFRRALALDPQCLEAV 549
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28559.7779.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FTU3_ECTSI6.700e-5545.99Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L1V4_9PHAE1.100e-4946.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 126..159
e-value: 34.0
score: 10.3
coord: 277..310
e-value: 0.26
score: 20.4
IPR019734Tetratricopeptide repeatPFAMPF13181TPR_8coord: 278..310
e-value: 0.0032
score: 17.6
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..29
score: 0.644
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 18..310

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig28559contigH-paniculata_contig28559:214..2091 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig28559.7779.1mRNA_H-paniculata_contig28559.7779.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig28559 214..2091 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig28559.7779.1 ID=prot_H-paniculata_contig28559.7779.1|Name=mRNA_H-paniculata_contig28559.7779.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=314bp
RLPLQDAAPRLLHLVRFSWLLACANLALGRPAAAIRILSVAEHAYGARRS
AWRKATLFFATSPRGGSGPAPLSHRSNSTQTPHAAAAAAAAAAAQMQANV
PSGVRGGGDGRSFLSGRELGRDPVLAICRFMRGLAVLYGGDVTAAAEQME
ECLELDPTCRHAAVCLAHISCFASIFTAGNPGKGREGGGGGGEGGGGGTH
SNHPPPPGTRYHRWHPPNQRTQELLRVLALGVSTTAYNGVLRDGTTWRNR
EDGSGAARRGKGGSGGGGSGGGEGGGVEACLLLACVARAAGDAGGAVSMF
RKALGLDPHCLEGV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR011990TPR-like_helical_dom_sf