mRNA_H-paniculata_contig28559.7779.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig28559.7779.1
Unique NamemRNA_H-paniculata_contig28559.7779.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig28559.7779.1 vs. uniprot
Match: D7FTU3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTU3_ECTSI)

HSP 1 Score: 201 bits (511), Expect = 6.700e-55
Identity = 149/324 (45.99%), Postives = 173/324 (53.40%), Query Frame = 1 
Query:    1 RLPLQDAAPRLLHLVRFSWLLACANLALGRPAAAIRILSVAEHAYGARRSAWRKATLFFATSPRGGSG-------PAPLSHRSNSTQTPHAXXXXXXXXXXQMQANVPSGVRGGGDGRSFLSGRELGRDPVLAICRFMRGLAVLYGGDVTAAAEQMEECLELDPTCRHAAVCLAHISCFASIFTAGNPGKGREGXXXXXXXXXXXXXXXXXXXXGTRYHRWHPPNQRTQELLRVLALGVST---TAYNGVLRDGTTWRNREDGSGAARRGKGGSXXXXXXXXXXXXXEACLLLACVARAAGDAGGAVSMFRKALGLDPHCLEGV 942
            RLPL +AAPRLLHL+R SWLLA ANLALGR AAA R++SVAEHAYGARRSAWR+A+L  +T P G S        PAPL   + +T                      S   GGG     L     GRDP LA+CRF+RGL  L  GD+ AAA ++EE L+LDP  RHA VCLAHISCFAS   A                              T    W P ++RT ELLRVL+LG S    +    +L  G                + G      XXXXXX  EA +LLAC ARA G+AG AVSMFR+AL LDP CLE V
Sbjct:  261 RLPLSEAAPRLLHLLRMSWLLAVANLALGRAAAASRLVSVAEHAYGARRSAWRRASLLLSTRPTGASATYTAPPPPAPLHPLAPAT----------------------SKQGGGGSANGTLRXXXXGRDPALAMCRFLRGLGSLAQGDLEAAAGRLEESLDLDPRNRHATVCLAHISCFASASPATT----------------------------TTSLGWEPSDERTHELLRVLSLGSSAHFDSIEQEILLRGXXXXXXXXXXXXXXXXEAGRCMWRAXXXXXXV-EAWVLLACAARATGNAGEAVSMFRRALALDPQCLEAV 533
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BLAST of mRNA_H-paniculata_contig28559.7779.1 vs. uniprot
Match: A0A6H5L1V4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1V4_9PHAE)

HSP 1 Score: 187 bits (475), Expect = 1.100e-49
Identity = 151/324 (46.60%), Postives = 172/324 (53.09%), Query Frame = 1 
Query:    1 RLPLQDAAPRLLHLVRFSWLLACANLALGRPAAAIRILSVAEHAYGARRSAWRKATLFFATSPRGGSGP-------APLSHRSNSTQTPHAXXXXXXXXXXQMQANVPSGVRGGGDGRSFLSGRELGRDPVLAICRFMRGLAVLYGGDVTAAAEQMEECLELDPTCRHAAVCLAHISCFASIFTAGNPGKGREGXXXXXXXXXXXXXXXXXXXXGTRYHRWHPPNQRTQELLRVLALGVST---TAYNGVLRDGTTWRNREDGSGAARRGKGGSXXXXXXXXXXXXXEACLLLACVARAAGDAGGAVSMFRKALGLDPHCLEGV 942
            RLPL +AAPRLLHL+R SWLLA ANLALGR AAA RI+ VAEHAYGARRSAWR+A+L  +T P G S         APL H   +  + H                      G G             DP LA+CRF+RGL  L  GD+ AAA ++EE L+LDP  RHA VCLAHISCFAS   A                              T   RW P ++RT ELLRVL+LG S    +    +L  G                    XXXXXXXXXXXX EA LLLAC ARA G+AG AVSMFR+AL LDP CLE V
Sbjct:  281 RLPLSEAAPRLLHLLRMSWLLAVANLALGRAAAASRIVCVAEHAYGARRSAWRRASLLLSTRPTGASAAYTPXXXXAPL-HPLGAATSKHG---------------------GVGXXXXXXXXXXXXNDPALAMCRFLRGLGSLAQGDLEAAAGRLEESLDLDPRNRHATVCLAHISCFASASPA------------------------------TTSLRWKPSDERTHELLRVLSLGSSAHFDSIEQEILLRGXXXXXXXXXXXXXXXXX---XXXXXXXXXXXXVEAWLLLACAARATGNAGEAVSMFRRALALDPQCLEAV 549
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28559.7779.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FTU3_ECTSI6.700e-5545.99Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L1V4_9PHAE1.100e-4946.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig28559contigH-paniculata_contig28559:214..2091 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-25_001540.1
Exons4
Model size942
Cds size942
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig28559.7779.1prot_H-paniculata_contig28559.7779.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig28559 214..2091 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929868.1897547-CDS-H-paniculata_contig28559:213..5441622929868.1897547-CDS-H-paniculata_contig28559:213..544Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28559 214..544 +
1691481046.4597943-CDS-H-paniculata_contig28559:213..5441691481046.4597943-CDS-H-paniculata_contig28559:213..544Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28559 214..544 +
1622929868.2085989-CDS-H-paniculata_contig28559:658..7771622929868.2085989-CDS-H-paniculata_contig28559:658..777Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28559 659..777 +
1691481046.4702058-CDS-H-paniculata_contig28559:658..7771691481046.4702058-CDS-H-paniculata_contig28559:658..777Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28559 659..777 +
1622929868.2225757-CDS-H-paniculata_contig28559:1545..19121622929868.2225757-CDS-H-paniculata_contig28559:1545..1912Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28559 1546..1912 +
1691481046.47904-CDS-H-paniculata_contig28559:1545..19121691481046.47904-CDS-H-paniculata_contig28559:1545..1912Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28559 1546..1912 +
1622929868.2347717-CDS-H-paniculata_contig28559:1966..20911622929868.2347717-CDS-H-paniculata_contig28559:1966..2091Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28559 1967..2091 +
1691481046.4888904-CDS-H-paniculata_contig28559:1966..20911691481046.4888904-CDS-H-paniculata_contig28559:1966..2091Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28559 1967..2091 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig28559.7779.1

>prot_H-paniculata_contig28559.7779.1 ID=prot_H-paniculata_contig28559.7779.1|Name=mRNA_H-paniculata_contig28559.7779.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=314bp
RLPLQDAAPRLLHLVRFSWLLACANLALGRPAAAIRILSVAEHAYGARRS
AWRKATLFFATSPRGGSGPAPLSHRSNSTQTPHAAAAAAAAAAAQMQANV
PSGVRGGGDGRSFLSGRELGRDPVLAICRFMRGLAVLYGGDVTAAAEQME
ECLELDPTCRHAAVCLAHISCFASIFTAGNPGKGREGGGGGGEGGGGGTH
SNHPPPPGTRYHRWHPPNQRTQELLRVLALGVSTTAYNGVLRDGTTWRNR
EDGSGAARRGKGGSGGGGSGGGEGGGVEACLLLACVARAAGDAGGAVSMF
RKALGLDPHCLEGV
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mRNA from alignment at H-paniculata_contig28559:214..2091+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig28559.7779.1 ID=mRNA_H-paniculata_contig28559.7779.1|Name=mRNA_H-paniculata_contig28559.7779.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1878bp|location=Sequence derived from alignment at H-paniculata_contig28559:214..2091+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTTGCCCCTCCAAGACGCAGCTCCCCGTCTGCTGCACCTTGTTCGCTT
CTCCTGGCTCCTGGCCTGTGCGAACCTGGCGCTGGGTCGCCCGGCCGCCG
CTATCCGCATTCTCTCAGTCGCCGAACACGCGTACGGCGCTCGACGCTCG
GCATGGCGCAAAGCCACTCTCTTCTTCGCGACCTCCCCCCGCGGCGGGTC
AGGCCCGGCACCTCTTTCGCACCGCTCAAACTCGACCCAGACCCCGCACG
CTGCCGCTGCTGCTGCTGCTGCTGCTGCAGCCCAAATGCAGGCGAACGTT
CCAAGCGGCGTCCGGGGCGGCGGTGACGGTCGTGGTTACGGCGGGATTGC
TCGCAGCGGGTTGGGTTGGCGGCGAGGGGGGGGTGGAGGGGATCGGGCGG
CAGGGGAAGGTGGCCGACCGCCGGTGGCAGCGGCGGCGGCGGGAGGATCT
TTTTTGTCGGGGAGGGAACTGGGTAGGGATCCTGTGCTGGCCATCTGTAG
GTTCATGAGGGGGTTGGCGGTGTTGTATGGTGGGGATGTGACGGCTGCGG
CAGAGCAGATGGAGGTGACGGTTGTTTTCGTTGTCAGGGGTGGGTTGTGT
TTGGGTGTCGCAAGGAATATGTGCTGTAAAAATTGTCGCAATTAAAAATT
GCCGTGAGGTCAAATCCTACCTTATCATTTTAAGAATTAAAACACATTTA
TTTTTATTTTTATAGTTGACACTATTTTTTTTTTTTTTTGATAATTTTAA
TATTAATAGGGTATTATTATTATTATTTTTATTATTATTATTATTATTAT
TATTATTTATTTTTTTATTATTGTTTGGTATAAACTATTTTCTATTTATC
GTAGCTATTGCATTTTTGTACTTCAGTGCTTTGGATATGAAATGAATGCC
TTGGGAGAAAAGTGTGAACGAAATATTTGCAGACGAAAGGTTGGGGGGGG
GGGGGGGGCGGTATGTAGTGCTGCGAAATTTCGGTAGATTTTTTATGTTT
GTGTAGAAGATGAACATTTCTATTGGACTTGGTTGTCCTCAGGGATAAAA
AAGATCTATTTTTTGGTGAGTGTTGTGTTAGCTCGCGATTTCCTACTGTG
CAATCCCGCCCTCTGTTCCCCCGATTTCATCCATCGTGTCGAGTGAGTGG
GTGTTGGTTCGAACGGCTACAACAATTAGTAGGCAAGCTACGGTTGCTGT
AAGTGGCGGCGGCGCTGTCGCCTTATGTCTGTTGGCGGTGTCGAGAGGAA
GTCAAGAGGTTAATAAATTGTACATGAACTATGATCATAGCTCAGTCCCC
CCTCTCCCCCCCCCCCCTCCGAACTTCGTTAGGAATGCCTCGAGCTAGAC
CCTACTTGCCGACACGCGGCCGTGTGCCTCGCGCATATCTCCTGTTTCGC
CTCCATCTTCACCGCGGGAAACCCGGGGAAGGGGAGAGAGGGAGGAGGAG
GAGGAGGAGAGGGGGGGGGGGGGGGCACCCATAGCAATCACCCCCCACCC
CCGGGAACGCGATACCACCGGTGGCACCCACCAAACCAACGCACCCAAGA
ACTTCTGCGCGTGCTAGCACTCGGGGTTTCCACAACAGCGTACAACGGTG
TCTTGCGGGACGGTACAACATGGCGAAATCGTGAGGATGGAAGCGGTGCA
GCTAGGCGTGGTAAGGGCGGCAGTGGAGGCGGAGGCAGCGGCGGGGGTGG
TGATGGTGGATGGGCGGAGTTTGACGGGACTTGGAGAGCGTTTGCTGAAG
AAGAGGGGGGCGGGGTCGAGGCGTGTCTACTGCTAGCGTGCGTGGCGAGG
GCAGCAGGGGACGCGGGAGGCGCCGTTTCCATGTTTCGGAAGGCGCTGGG
GTTGGATCCCCATTGCTTGGAAGGTGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig28559:214..2091+

>mRNA_H-paniculata_contig28559.7779.1 ID=mRNA_H-paniculata_contig28559.7779.1|Name=mRNA_H-paniculata_contig28559.7779.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1884bp|location=Sequence derived from alignment at H-paniculata_contig28559:214..2091+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTTGCCCCTCCAAGACGCAGCTCCCCGTCTGCTGCACCTTGTTCGCTT
CTCCTGGCTCCTGGCCTGTGCGAACCTGGCGCTGGGTCGCCCGGCCGCCG
CTATCCGCATTCTCTCAGTCGCCGAACACGCGTACGGCGCTCGACGCTCG
GCATGGCGCAAAGCCACTCTCTTCTTCGCGACCTCCCCCCGCGGCGGGTC
AGGCCCGGCACCTCTTTCGCACCGCTCAAACTCGACCCAGACCCCGCACG
CTGCCGCTGCTGCTGCTGCTGCTGCTGCAGCCCAAATGCAGGCGAACGTT
CCAAGCGGCGTCCGGGGCGGCGGTGACGGTCAGGTTGCCCCTCCAAGACG
CAGCTCCCCGTCTGCTGCACCTTGTTCGCTTCTCCTGGCTCCTGGCCTGT
GCGAACCTGGCGCTGGGTCGCCCGGCCGCCGCTATCCGCATTCTCTCAGT
CGCCGAACACGCGTACGGCGCTCGACGCTCGGCATGGCGCAAAGCCACTC
TCTTCTTCGCGACCTCCCCCCGCGGCGGGTCAGGCCCGGCACCTCTTTCG
CACCGCTCAAACTCGACCCAGACCCCGCACGCTGCCGCTGCTGCTGCTGC
TGCTGCTGCAGCCCAAATGCAGGCGAACGTTCCAAGCGGCGTCCGGGGCG
GCGGTGACGGTCGATCTTTTTTGTCGGGGAGGGAACTGGGTAGGGATCCT
GTGCTGGCCATCTGTAGGTTCATGAGGGGGTTGGCGGTGTTGTATGGTGG
GGATGTGACGGCTGCGGCAGAGCAGATGGAGGATCTTTTTTGTCGGGGAG
GGAACTGGGTAGGGATCCTGTGCTGGCCATCTGTAGGTTCATGAGGGGGT
TGGCGGTGTTGTATGGTGGGGATGTGACGGCTGCGGCAGAGCAGATGGAG
GAATGCCTCGAGCTAGACCCTACTTGCCGACACGCGGCCGTGTGCCTCGC
GCATATCTCCTGTTTCGCCTCCATCTTCACCGCGGGAAACCCGGGGAAGG
GGAGAGAGGGAGGAGGAGGAGGAGGAGAGGGGGGGGGGGGGGGCACCCAT
AGCAATCACCCCCCACCCCCGGGAACGCGATACCACCGGTGGCACCCACC
AAACCAACGCACCCAAGAACTTCTGCGCGTGCTAGCACTCGGGGTTTCCA
CAACAGCGTACAACGGTGTCTTGCGGGACGGTACAACATGGCGAAATCGT
GAGGATGGAAGCGGTGCAGCTAGGCGTGGTAAGGGCGGCAGTGGAGGCGG
AGGCAGCGGCGGGGGTGGAATGCCTCGAGCTAGACCCTACTTGCCGACAC
GCGGCCGTGTGCCTCGCGCATATCTCCTGTTTCGCCTCCATCTTCACCGC
GGGAAACCCGGGGAAGGGGAGAGAGGGAGGAGGAGGAGGAGGAGAGGGGG
GGGGGGGGGGCACCCATAGCAATCACCCCCCACCCCCGGGAACGCGATAC
CACCGGTGGCACCCACCAAACCAACGCACCCAAGAACTTCTGCGCGTGCT
AGCACTCGGGGTTTCCACAACAGCGTACAACGGTGTCTTGCGGGACGGTA
CAACATGGCGAAATCGTGAGGATGGAAGCGGTGCAGCTAGGCGTGGTAAG
GGCGGCAGTGGAGGCGGAGGCAGCGGCGGGGGTGAGGGGGGCGGGGTCGA
GGCGTGTCTACTGCTAGCGTGCGTGGCGAGGGCAGCAGGGGACGCGGGAG
GCGCCGTTTCCATGTTTCGGAAGGCGCTGGGGTTGGATCCCCATTGCTTG
GAAGGTGTGAGGGGGGCGGGGTCGAGGCGTGTCTACTGCTAGCGTGCGTG
GCGAGGGCAGCAGGGGACGCGGGAGGCGCCGTTTCCATGTTTCGGAAGGC
GCTGGGGTTGGATCCCCATTGCTTGGAAGGTGTG
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