mRNA_H-paniculata_contig2854.7775.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig2854.7775.1 vs. uniprot
Match: A0A0L9VQR0_PHAAN (Integrase catalytic domain-containing protein n=1 Tax=Phaseolus angularis TaxID=3914 RepID=A0A0L9VQR0_PHAAN) HSP 1 Score: 122 bits (306), Expect = 1.360e-32 Identity = 58/135 (42.96%), Postives = 86/135 (63.70%), Query Frame = 1
Query: 7 FRQFCAENGIKPEFSATYTPRQNGEAERSWHSIFEIARTSMIMANMGRRYWA*AVRSAVYCLNRAPTRPGNGGMPSEIWHGEISKLDHLRVFGSMAYVIFQSQQRCRLDDKAWAGVFLGYDEDNPSYRIYNPENK 411
F++FC E+GI+ E + TP+ NG AER ++ E A++ + + + +++WA AV +A Y +NR+P+ P +P E+W G+ KL HLRVFG +AYV Q R +LD K+ FLGY ED YRI++ ENK
Sbjct: 26 FKKFCYEHGIRMERTVPSTPQHNGVAERMNRTLTERAKSMRVQSGLPKQFWAEAVNTAAYLINRSPSVPLEHKIPEEVWSGKEVKLSHLRVFGCVAYVHISDQVRNKLDPKSKKCTFLGYGEDEFGYRIWDDENK 160
BLAST of mRNA_H-paniculata_contig2854.7775.1 vs. uniprot
Match: UPI001025AD12 (DDE-type integrase/transposase/recombinase n=1 Tax=Enterobacter cloacae complex sp. CH23B TaxID=2511986 RepID=UPI001025AD12) HSP 1 Score: 120 bits (300), Expect = 5.240e-31 Identity = 56/137 (40.88%), Postives = 78/137 (56.93%), Query Frame = 1
Query: 1 KPFRQFCAENGIKPEFSATYTPRQNGEAERSWHSIFEIARTSMIMANMGRRYWA*AVRSAVYCLNRAPTRPGNGGMPSEIWHGEISKLDHLRVFGSMAYVIFQSQQRCRLDDKAWAGVFLGYDEDNPSYRIYNPENK 411
K F+ FC GIK E +A Y P QNG AER S+ E+AR + + +W A+ A Y LNR PT+ P E WH ++H+RVFG +AY + QR +LDDKA +F+GY ++ YR+Y+P+ K
Sbjct: 50 KAFQDFCESKGIKRELTAPYNPPQNGVAERKNRSLTEMARCMVKSQALPHSFWLEAIMCATYVLNRCPTKALQPITPYEAWHDRKPSIEHMRVFGCLAYALVPQTQRGKLDDKAVKCIFVGYSAESKGYRLYHPQTK 186
BLAST of mRNA_H-paniculata_contig2854.7775.1 vs. uniprot
Match: A0A2I0WJT9_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0WJT9_9ASPA) HSP 1 Score: 119 bits (297), Expect = 1.550e-30 Identity = 51/131 (38.93%), Postives = 79/131 (60.31%), Query Frame = 1
Query: 7 FRQFCAENGIKPEFSATYTPRQNGEAERSWHSIFEIARTSMIMANMGRRYWA*AVRSAVYCLNRAPTRPGNGGMPSEIWHGEISKLDHLRVFGSMAYVIFQSQQRCRLDDKAWAGVFLGYDEDNPSYRIYN 399
F FC E G++ + + YTP+QNG ER ++ E+AR+ +I ++ +++WA AV +AVY LNR PT+ P E W G+ +DH R+FG + YV Q+R +L++K G+FLGY + Y +N
Sbjct: 69 FEDFCKEEGLEHQLTVAYTPQQNGVTERKNRTVMEMARSMLIAKDIPKKFWAEAVNTAVYVLNRCPTKAVKDITPIEAWSGDKPSVDHFRIFGCLCYVHIPKQKRHKLEEKPDKGIFLGYSSQSKGYIFFN 199
BLAST of mRNA_H-paniculata_contig2854.7775.1 vs. uniprot
Match: A0A4Y1RF43_PRUDU (Transposable element protein n=4 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RF43_PRUDU) HSP 1 Score: 120 bits (301), Expect = 2.850e-30 Identity = 58/137 (42.34%), Postives = 84/137 (61.31%), Query Frame = 1
Query: 7 FRQFCAENGIKPEFSATYTPRQNGEAERSWHSIFEIARTSMIMANMGRRYWA*AVRSAVYCLNRAPTRPGNGGMPSEIWHGEISKLDHLRVFGSMAYVIFQSQQRCRLDDKAWAGVFLGYDEDNPSYRIYNPENKSA 417
F++FC E GI+ E + TP+ NG AER ++ E AR+ I + + +++WA AV +A Y +NR P+ P +P E+W G+ KL HL+VFG +AYV Q R +LD K+ F+GY ED YRI++ ENK
Sbjct: 122 FKKFCYEQGIRMERTVPGTPQHNGVAERMNRTLTERARSIRIQSGLPKQFWAEAVNTAAYLINRGPSVPLEHRIPEEVWSGKEIKLSHLKVFGCVAYVHISDQGRNKLDPKSKKCTFIGYGEDEFGYRIWDNENKKV 258
BLAST of mRNA_H-paniculata_contig2854.7775.1 vs. uniprot
Match: A0A6D2IM54_9BRAS (Uncharacterized protein n=2 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2IM54_9BRAS) HSP 1 Score: 124 bits (311), Expect = 3.000e-30 Identity = 57/135 (42.22%), Postives = 87/135 (64.44%), Query Frame = 1
Query: 7 FRQFCAENGIKPEFSATYTPRQNGEAERSWHSIFEIARTSMIMANMGRRYWA*AVRSAVYCLNRAPTRPGNGGMPSEIWHGEISKLDHLRVFGSMAYVIFQSQQRCRLDDKAWAGVFLGYDEDNPSYRIYNPENK 411
F+ +C ENGIK + +A YTP+QNG AER SI +AR M+ ++ RR+W AV+ AV+ LNR+P+ P E W ++H+RVFG +AY + ++R +LD+K+ VF+G +++ +YR+YNPE K
Sbjct: 578 FQDYCRENGIKRQLTAAYTPQQNGIAERKNRSIMNMARCMMLGMSVPRRFWPEAVQYAVHVLNRSPSAALGDVTPDERWSNHKPSVEHVRVFGCVAYALVPYERRVKLDEKSIQCVFVGVSKESKAYRLYNPETK 712
BLAST of mRNA_H-paniculata_contig2854.7775.1 vs. uniprot
Match: A0A6A1WU20_9ROSI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Morella rubra TaxID=262757 RepID=A0A6A1WU20_9ROSI) HSP 1 Score: 120 bits (301), Expect = 5.220e-30 Identity = 55/137 (40.15%), Postives = 85/137 (62.04%), Query Frame = 1
Query: 1 KPFRQFCAENGIKPEFSATYTPRQNGEAERSWHSIFEIARTSMIMANMGRRYWA*AVRSAVYCLNRAPTRPGNGGMPSEIWHGEISKLDHLRVFGSMAYVIFQSQQRCRLDDKAWAGVFLGYDEDNPSYRIYNPENK 411
K F +FC + G++ + + YTP+QNG +ER ++ E+A + ++ + + +WA AV +AVY LNR PT+ P E W G S HLRVFGS+ Y+ +Q+R +L++K+ G+FLGY + YR+YN E K
Sbjct: 30 KEFDKFCEDEGVEHQLTIAYTPQQNGVSERKNRTVMEMAISMLMEKGLPKMFWAEAVYTAVYLLNRCPTKAVQDKTPVEAWSGLKSSAKHLRVFGSICYIHIPAQRRHKLEEKSQKGIFLGYGLVSKGYRVYNLETK 166
BLAST of mRNA_H-paniculata_contig2854.7775.1 vs. uniprot
Match: A0A8J5FC91_ZINOF (Integrase catalytic domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5FC91_ZINOF) HSP 1 Score: 123 bits (308), Expect = 6.060e-30 Identity = 53/133 (39.85%), Postives = 84/133 (63.16%), Query Frame = 1
Query: 4 PFRQFCAENGIKPEFSATYTPRQNGEAERSWHSIFEIARTSMIMANMGRRYWA*AVRSAVYCLNRAPTRPGNGGMPSEIWHGEISKLDHLRVFGSMAYVIFQSQQRCRLDDKAWAGVFLGYDEDNPSYRIYNP 402
PF ++C NGIK + + +YTP+QNG AER +I E+AR+ + + YWA AV +A Y +NR+PT+ + P E WH + +DH ++FGS+AY + SQ+R + D K +F+GY+ ++ YR+ +P
Sbjct: 448 PFSEYCKANGIKRQLTTSYTPQQNGVAERKNRTIVEMARSMLKYKGIPNLYWAEAVHTAAYIMNRSPTKAVHNMTPYEAWHKKKPVVDHFKIFGSLAYALLPSQRREKFDSKGQKLIFIGYNNESKGYRLLDP 580
BLAST of mRNA_H-paniculata_contig2854.7775.1 vs. uniprot
Match: A0A1R3HGA4_COCAP (Integrase, catalytic core n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3HGA4_COCAP) HSP 1 Score: 123 bits (308), Expect = 7.640e-30 Identity = 55/131 (41.98%), Postives = 82/131 (62.60%), Query Frame = 1
Query: 7 FRQFCAENGIKPEFSATYTPRQNGEAERSWHSIFEIARTSMIMANMGRRYWA*AVRSAVYCLNRAPTRPGNGGMPSEIWHGEISKLDHLRVFGSMAYVIFQSQQRCRLDDKAWAGVFLGYDEDNPSYRIYN 399
F +FC E GI+ +F+ +YTP+QNG +ER ++ E++R + + +++WA AV ++VY LNR TR NG P E W+G +DHLR+FG + Y +R +LD KA G+FLGY + YR+YN
Sbjct: 421 FGKFCEEAGIEHQFTVSYTPQQNGVSERKNRTVMEMSRCLLFEKKLPKKFWAEAVSTSVYLLNRLSTRAINGKTPYEAWYGVKPSVDHLRIFGCICYAYVPEVKRDKLDHKADTGIFLGYSSNVKGYRVYN 551
BLAST of mRNA_H-paniculata_contig2854.7775.1 vs. uniprot
Match: A0A8J5F3N7_ZINOF (Integrase catalytic domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5F3N7_ZINOF) HSP 1 Score: 122 bits (307), Expect = 1.040e-29 Identity = 53/133 (39.85%), Postives = 83/133 (62.41%), Query Frame = 1
Query: 4 PFRQFCAENGIKPEFSATYTPRQNGEAERSWHSIFEIARTSMIMANMGRRYWA*AVRSAVYCLNRAPTRPGNGGMPSEIWHGEISKLDHLRVFGSMAYVIFQSQQRCRLDDKAWAGVFLGYDEDNPSYRIYNP 402
PF ++C NGIK + + +YTP+QNG AER +I E+AR+ + + YWA AV +A Y +NR+PT+ + P E WH + +DH ++FGS+AY + SQ+R + D K +F+GY ++ YR+ +P
Sbjct: 556 PFSEYCKANGIKRQLTTSYTPQQNGVAERKNRTIVEMARSMLKYKGIPNLYWAEAVHTAAYIMNRSPTKAVHNMTPYEAWHKKKPVVDHFKIFGSLAYALLPSQRREKFDSKGQKLIFIGYSNESKGYRLLDP 688
BLAST of mRNA_H-paniculata_contig2854.7775.1 vs. uniprot
Match: A0A8J5GP83_ZINOF (Integrase catalytic domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5GP83_ZINOF) HSP 1 Score: 122 bits (306), Expect = 1.370e-29 Identity = 53/133 (39.85%), Postives = 82/133 (61.65%), Query Frame = 1
Query: 4 PFRQFCAENGIKPEFSATYTPRQNGEAERSWHSIFEIARTSMIMANMGRRYWA*AVRSAVYCLNRAPTRPGNGGMPSEIWHGEISKLDHLRVFGSMAYVIFQSQQRCRLDDKAWAGVFLGYDEDNPSYRIYNP 402
PF ++C NGIK + + +YTP+QNG AER +I E+AR + + YWA AV +A Y +NR+PT+ + P E WH + +DH ++FGS+AY + SQ+R + D K +F+GY ++ YR+ +P
Sbjct: 586 PFSEYCKANGIKRQLTTSYTPQQNGVAERKNRTIVEMARNMLKYKGIPNLYWAEAVHTAAYIMNRSPTKAVHNMTPYEAWHKKKPVVDHFKIFGSLAYALLPSQRREKFDSKGQKLIFIGYSNESKGYRLLDP 718 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2854.7775.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2854.7775.1 >prot_H-paniculata_contig2854.7775.1 ID=prot_H-paniculata_contig2854.7775.1|Name=mRNA_H-paniculata_contig2854.7775.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=65bp MPSEIWHGEISKLDHLRVFGSMAYVIFQSQQRCRLDDKAWAGVFLGYDEDback to top mRNA from alignment at H-paniculata_contig2854:14151..14570- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2854.7775.1 ID=mRNA_H-paniculata_contig2854.7775.1|Name=mRNA_H-paniculata_contig2854.7775.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=420bp|location=Sequence derived from alignment at H-paniculata_contig2854:14151..14570- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2854:14151..14570- >mRNA_H-paniculata_contig2854.7775.1 ID=mRNA_H-paniculata_contig2854.7775.1|Name=mRNA_H-paniculata_contig2854.7775.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at H-paniculata_contig2854:14151..14570- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |