mRNA_H-paniculata_contig28533.7773.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig28533.7773.1
Unique NamemRNA_H-paniculata_contig28533.7773.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig28533.7773.1 vs. uniprot
Match: D7FNL8_ECTSI (Homoserine dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNL8_ECTSI)

HSP 1 Score: 302 bits (774), Expect = 1.090e-98
Identity = 152/168 (90.48%), Postives = 159/168 (94.64%), Query Frame = 1
Query:    1 VVTDYAKILDDDSINCVVELMGGVTHAKDVVFEAIRRNKHVITANKALVAAHLDDIQNLLKEHPGVTFGYEAAVCGGIPIIATLQNDYPGDKILKVCGIMNGTTNFMLSKMESEGADYGDVLKEAQDLGFAEADPTADVEGLDVQAKIALLTKLAFGATVSSDSVRLK 504
            VVTDYA ILDDDSINCVVELMGGVT AKDVVFEAIRRNKHV+TANKALVAA+L +IQ LLKEHPGVTFGYEAAVCGGIPIIATLQNDY GDKILKVCGIMNGTTNFMLSKMESEGADYG+VLKEAQDLG+AEADPTADVEG DVQAKIALLTKLAFGATV SD ++ K
Sbjct:  130 VVTDYAAILDDDSINCVVELMGGVTDAKDVVFEAIRRNKHVVTANKALVAAYLGEIQELLKEHPGVTFGYEAAVCGGIPIIATLQNDYLGDKILKVCGIMNGTTNFMLSKMESEGADYGEVLKEAQDLGYAEADPTADVEGFDVQAKIALLTKLAFGATVPSDLIQCK 297          
BLAST of mRNA_H-paniculata_contig28533.7773.1 vs. uniprot
Match: A0A835ZAD6_9STRA (Homoserine dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAD6_9STRA)

HSP 1 Score: 266 bits (680), Expect = 2.600e-85
Identity = 134/165 (81.21%), Postives = 147/165 (89.09%), Query Frame = 1
Query:    1 VVTDYAKILDDDSINCVVELMGGVTHAKDVVFEAIRRNKHVITANKALVAAHLDDIQNLLKEHPGVTFGYEAAVCGGIPIIATLQNDYPGDKILKVCGIMNGTTNFMLSKMESEGADYGDVLKEAQDLGFAEADPTADVEGLDVQAKIALLTKLAFGATVSSDSV 495
            VV+DY  IL+DDSINCVVELMGGVT+AKDVVFEAI+R KHV+TANKAL+A +L +IQ LLK+HP V F YEAAVCGGIPII  LQND+ GDKI K+CGIMNGTTNFMLSKMESEGADY DVLKEAQ LG+AEADPTADVEGLDVQAKIALL KLAFGATV  D+V
Sbjct:   66 VVSDYKAILEDDSINCVVELMGGVTNAKDVVFEAIKRGKHVVTANKALLAQYLPEIQELLKQHPEVHFAYEAAVCGGIPIINVLQNDFFGDKISKICGIMNGTTNFMLSKMESEGADYDDVLKEAQALGYAEADPTADVEGLDVQAKIALLAKLAFGATVPVDTV 230          
BLAST of mRNA_H-paniculata_contig28533.7773.1 vs. uniprot
Match: A0A835YR06_9STRA (Homoserine dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR06_9STRA)

HSP 1 Score: 243 bits (621), Expect = 6.000e-77
Identity = 127/166 (76.51%), Postives = 136/166 (81.93%), Query Frame = 1
Query:    4 VTDYAKILDDDSINCVVELMGGVTHAKDVVFEAIRRNKHVITANKALVAAHLDDIQNLLKEHPGVTFGYEAAVCGGIPIIATLQNDYPGDKILKVCGIMNGTTNFMLSKMESEGADYGDVLKEAQDLGFAEADPTADVEGLDVQAKIALLTK--LAFGATVSSDSV 495
            VTDY  IL DDSINC++ELMGGVTHAKDVVFEA++R KHVITANKAL+AA+L +I+ LL   P    GYEAAVCGGIPIIA LQ DY GD I KV GIMNGTTNFML+KME EGADY  VLKEAQDLGFAEADPTADVEG DVQAKIALL K  LAFG TV   SV
Sbjct:   63 VTDYDAILKDDSINCIIELMGGVTHAKDVVFEALKRGKHVITANKALLAAYLPEIEALLAAAPQARLGYEAAVCGGIPIIAALQQDYVGDSITKVVGIMNGTTNFMLTKMEQEGADYAAVLKEAQDLGFAEADPTADVEGHDVQAKIALLAKANLAFGQTVPLSSV 228          
BLAST of mRNA_H-paniculata_contig28533.7773.1 vs. uniprot
Match: D8LHG9_ECTSI (Homoserine dehydrogenase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHG9_ECTSI)

HSP 1 Score: 241 bits (615), Expect = 1.830e-75
Identity = 120/164 (73.17%), Postives = 138/164 (84.15%), Query Frame = 1
Query:    4 VTDYAKILDDDSINCVVELMGGVTHAKDVVFEAIRRNKHVITANKALVAAHLDDIQNLLKEHPGVTFGYEAAVCGGIPIIATLQNDYPGDKILKVCGIMNGTTNFMLSKMESEGADYGDVLKEAQDLGFAEADPTADVEGLDVQAKIALLTKLAFGATVSSDSV 495
            VTDY +IL+DDSINCVVELMGGVTHAKDVVF+A+++ KHV+TANKAL+A  L ++++L+ E+ G T GYEAAVCGGIPII  +Q  Y GD I  V GIMNGTTNFML+KME+EGADY  VLKEAQDLGFAEADPTADVEG DVQAKIALL KLAFG  V+ D V
Sbjct:   63 VTDYDEILEDDSINCVVELMGGVTHAKDVVFKALKKGKHVVTANKALLAQLLPEVKSLVAENAGTTLGYEAAVCGGIPIIHNMQGSYVGDSIQSVMGIMNGTTNFMLTKMETEGADYAAVLKEAQDLGFAEADPTADVEGHDVQAKIALLAKLAFGQDVALDKV 226          
BLAST of mRNA_H-paniculata_contig28533.7773.1 vs. uniprot
Match: A0A6A4YYC0_9STRA (Homoserine dehydrogenase n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4YYC0_9STRA)

HSP 1 Score: 233 bits (594), Expect = 8.750e-75
Identity = 113/165 (68.48%), Postives = 135/165 (81.82%), Query Frame = 1
Query:    1 VVTDYAKILDDDSINCVVELMGGVTHAKDVVFEAIRRNKHVITANKALVAAHLDDIQNLLKEHPGVTFGYEAAVCGGIPIIATLQNDYPGDKILKVCGIMNGTTNFMLSKMESEGADYGDVLKEAQDLGFAEADPTADVEGLDVQAKIALLTKLAFGATVSSDSV 495
            + T Y  ILDD SINC+VELMGGVT AKDVVF+AI++NKHVITANKALVA H+ ++  LL+ HP V FGYEA+VCGGIPII TLQ+ Y GD I ++ GIMNGTTN+MLSKME+EGA Y  VLKEAQDLG+AEA+P+ADV+G DVQAKIA+L KL FG  +   S+
Sbjct:   64 ITTKYDDILDDSSINCIVELMGGVTDAKDVVFKAIQKNKHVITANKALVANHMTELNELLQAHPTVRFGYEASVCGGIPIIHTLQSSYSGDVIKEIAGIMNGTTNYMLSKMETEGASYEAVLKEAQDLGYAEANPSADVDGFDVQAKIAILAKLGFGCVIPPSSI 228          
BLAST of mRNA_H-paniculata_contig28533.7773.1 vs. uniprot
Match: A0A7S4D8P3_HETAK (Homoserine dehydrogenase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D8P3_HETAK)

HSP 1 Score: 234 bits (596), Expect = 8.560e-74
Identity = 117/165 (70.91%), Postives = 134/165 (81.21%), Query Frame = 1
Query:    1 VVTDYAKILDDDSINCVVELMGGVTHAKDVVFEAIRRNKHVITANKALVAAHLDDIQNLLKEHPGVTFGYEAAVCGGIPIIATLQNDYPGDKILKVCGIMNGTTNFMLSKMESEGADYGDVLKEAQDLGFAEADPTADVEGLDVQAKIALLTKLAFGATVSSDSV 495
            +VTD+  ILDD  INCV+E+MGG T AKDVV+ AI + KHV+TANKAL+A HL +IQ LL ++PGV FG+EAAVCGGIPII TLQND+ GD I K+ GIMNGTTN+ML+KMESEGADY  VL EAQ LG+AEADPTADVEG DVQAKIAL  KLAFG  V  D V
Sbjct:  136 IVTDFNAILDDPEINCVIEVMGGTTAAKDVVYAAIGKGKHVVTANKALLAQHLPEIQELLAQNPGVKFGFEAAVCGGIPIIHTLQNDFLGDNIRKLLGIMNGTTNYMLTKMESEGADYAAVLAEAQALGYAEADPTADVEGHDVQAKIALAAKLAFGVNVPVDQV 300          
BLAST of mRNA_H-paniculata_contig28533.7773.1 vs. uniprot
Match: A0A3R7Z5R8_9STRA (Homoserine dehydrogenase n=5 Tax=Aphanomyces TaxID=100860 RepID=A0A3R7Z5R8_9STRA)

HSP 1 Score: 231 bits (589), Expect = 2.230e-71
Identity = 112/165 (67.88%), Postives = 134/165 (81.21%), Query Frame = 1
Query:    1 VVTDYAKILDDDSINCVVELMGGVTHAKDVVFEAIRRNKHVITANKALVAAHLDDIQNLLKEHPGVTFGYEAAVCGGIPIIATLQNDYPGDKILKVCGIMNGTTNFMLSKMESEGADYGDVLKEAQDLGFAEADPTADVEGLDVQAKIALLTKLAFGATVSSDSV 495
            + T Y  ILDD SINC+VELMGGVT AKDVVF+AI++NKHVITANKALVA H+ ++  LL+ HP V FGYEA+VCGGIPII TLQ+ Y GD I ++ GIMNGTTN+MLSKME+EG  Y  VLKEAQDLG+AEA+P+ADV+G DVQAKIA+L KL FG  +   S+
Sbjct:   84 ITTKYDDILDDSSINCIVELMGGVTDAKDVVFKAIQKNKHVITANKALVANHMTELNELLQAHPTVRFGYEASVCGGIPIIHTLQSSYSGDVIKEIAGIMNGTTNYMLSKMETEGESYEAVLKEAQDLGYAEANPSADVDGFDVQAKIAILAKLGFGCVIPPSSI 248          
BLAST of mRNA_H-paniculata_contig28533.7773.1 vs. uniprot
Match: A0A6V1RNX4_HETAK (Homoserine dehydrogenase n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1RNX4_HETAK)

HSP 1 Score: 232 bits (591), Expect = 3.810e-71
Identity = 117/168 (69.64%), Postives = 135/168 (80.36%), Query Frame = 1
Query:    1 VVTDYAKILDDDSINCVVELMGGVTHAKDVVFEAIRRNKHVITANKALVAAHLDDIQNLLKEHPGVTFGYEAAVCGGIPIIATLQNDYPGDKILKVCGIMNGTTNFMLSKMESEGADYGDVLKEAQDLGFAEADPTADVEGLDVQAKIALLTKLAFGATVSSDSVRLK 504
            + TD+  ILDDD INCVVE+MGG T AKDVV+ AI + KHV+TANKAL+A +L ++Q  LK  P + FGYEAAVCGGIPII TLQNDY GDKI K+ GIMNGTTNFML+KMESEGADY  VL EAQ LG+AEADPTADVEG DVQAKIAL+ KLAFG  V  +++  K
Sbjct:  137 ITTDFNAILDDDEINCVVEVMGGTTAAKDVVYAAIEKGKHVVTANKALLAQYLPELQARLKARPLLKFGYEAAVCGGIPIIHTLQNDYLGDKIRKILGIMNGTTNFMLTKMESEGADYAAVLAEAQALGYAEADPTADVEGHDVQAKIALVAKLAFGVGVPVEAIPCK 304          
BLAST of mRNA_H-paniculata_contig28533.7773.1 vs. uniprot
Match: A0A6G0WX43_9STRA (Homoserine dehydrogenase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WX43_9STRA)

HSP 1 Score: 229 bits (584), Expect = 7.270e-71
Identity = 111/165 (67.27%), Postives = 134/165 (81.21%), Query Frame = 1
Query:    1 VVTDYAKILDDDSINCVVELMGGVTHAKDVVFEAIRRNKHVITANKALVAAHLDDIQNLLKEHPGVTFGYEAAVCGGIPIIATLQNDYPGDKILKVCGIMNGTTNFMLSKMESEGADYGDVLKEAQDLGFAEADPTADVEGLDVQAKIALLTKLAFGATVSSDSV 495
            + T Y  IL+D+SINC++ELMGGVT AKDVVF+AI +NKHVITANKALVA+ + ++ +LL+ HP V FGYEA+VCGGIPII TLQ+ Y GD I +V GIMNGTTN+MLSKME EGA Y  VLKEAQDLGFAEA+P+ADV+G DVQAKIA+L KL FG  +    +
Sbjct:   63 ITTKYDDILEDNSINCIIELMGGVTDAKDVVFKAIAKNKHVITANKALVASFMPELTDLLQAHPSVRFGYEASVCGGIPIIHTLQSSYSGDVIKEVAGIMNGTTNYMLSKMEKEGASYEAVLKEAQDLGFAEANPSADVDGFDVQAKIAILAKLGFGCVIKPSDI 227          
BLAST of mRNA_H-paniculata_contig28533.7773.1 vs. uniprot
Match: A0A1V9ZXW6_9STRA (Homoserine dehydrogenase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZXW6_9STRA)

HSP 1 Score: 229 bits (584), Expect = 7.460e-71
Identity = 114/165 (69.09%), Postives = 133/165 (80.61%), Query Frame = 1
Query:    1 VVTDYAKILDDDSINCVVELMGGVTHAKDVVFEAIRRNKHVITANKALVAAHLDDIQNLLKEHPGVTFGYEAAVCGGIPIIATLQNDYPGDKILKVCGIMNGTTNFMLSKMESEGADYGDVLKEAQDLGFAEADPTADVEGLDVQAKIALLTKLAFGATVSSDSV 495
            + + Y  ILDD SINCVVELMGGVT AKDVVF+AI +NKHVITANKAL+A  + D+ +LL+ HP V FGYEA+VCGGIPII TLQ+ Y GD I ++ GIMNGTTN+MLSKME EGA Y  VLKEAQDLGFAEA+P+ADV+G DVQAKIA+L KL FG  V   +V
Sbjct:   63 ITSKYDDILDDPSINCVVELMGGVTDAKDVVFKAIAKNKHVITANKALIANFMPDLTSLLEAHPNVRFGYEASVCGGIPIIHTLQSSYTGDGIKEIAGIMNGTTNYMLSKMEKEGASYDAVLKEAQDLGFAEANPSADVDGFDVQAKIAILAKLGFGCHVPPSTV 227          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28533.7773.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNL8_ECTSI1.090e-9890.48Homoserine dehydrogenase n=1 Tax=Ectocarpus silicu... [more]
A0A835ZAD6_9STRA2.600e-8581.21Homoserine dehydrogenase n=1 Tax=Tribonema minus T... [more]
A0A835YR06_9STRA6.000e-7776.51Homoserine dehydrogenase n=1 Tax=Tribonema minus T... [more]
D8LHG9_ECTSI1.830e-7573.17Homoserine dehydrogenase n=2 Tax=Ectocarpus TaxID=... [more]
A0A6A4YYC0_9STRA8.750e-7568.48Homoserine dehydrogenase n=1 Tax=Aphanomyces astac... [more]
A0A7S4D8P3_HETAK8.560e-7470.91Homoserine dehydrogenase (Fragment) n=1 Tax=Hetero... [more]
A0A3R7Z5R8_9STRA2.230e-7167.88Homoserine dehydrogenase n=5 Tax=Aphanomyces TaxID... [more]
A0A6V1RNX4_HETAK3.810e-7169.64Homoserine dehydrogenase n=3 Tax=Heterosigma akash... [more]
A0A6G0WX43_9STRA7.270e-7167.27Homoserine dehydrogenase n=1 Tax=Aphanomyces eutei... [more]
A0A1V9ZXW6_9STRA7.460e-7169.09Homoserine dehydrogenase n=1 Tax=Thraustotheca cla... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig28533contigH-paniculata_contig28533:243..2558 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score302.0
Seed ortholog evalue1.9e-79
Seed eggNOG ortholog2880.D7FNL8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Homoserine dehydrogenase
EggNOG OGs2QT5B@2759,COG0460@1
Ec32 ortholog descriptionHomoserine dehydrogenase
Ec32 orthologEc-01_005000.1
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size534
Cds size534
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig28533.7773.1prot_H-paniculata_contig28533.7773.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig28533 243..2558 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929867.3996022-CDS-H-paniculata_contig28533:242..3791622929867.3996022-CDS-H-paniculata_contig28533:242..379Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28533 243..379 -
1691481046.1546824-CDS-H-paniculata_contig28533:242..3791691481046.1546824-CDS-H-paniculata_contig28533:242..379Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28533 243..379 -
1622929867.4173899-CDS-H-paniculata_contig28533:806..9181622929867.4173899-CDS-H-paniculata_contig28533:806..918Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28533 807..918 -
1691481046.16885-CDS-H-paniculata_contig28533:806..9181691481046.16885-CDS-H-paniculata_contig28533:806..918Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28533 807..918 -
1622929867.433242-CDS-H-paniculata_contig28533:1464..15201622929867.433242-CDS-H-paniculata_contig28533:1464..1520Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28533 1465..1520 -
1691481046.17662-CDS-H-paniculata_contig28533:1464..15201691481046.17662-CDS-H-paniculata_contig28533:1464..1520Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28533 1465..1520 -
1622929867.4538846-CDS-H-paniculata_contig28533:1932..20741622929867.4538846-CDS-H-paniculata_contig28533:1932..2074Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28533 1933..2074 -
1691481046.192568-CDS-H-paniculata_contig28533:1932..20741691481046.192568-CDS-H-paniculata_contig28533:1932..2074Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28533 1933..2074 -
1622929867.4753067-CDS-H-paniculata_contig28533:2471..25581622929867.4753067-CDS-H-paniculata_contig28533:2471..2558Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28533 2472..2558 -
1691481046.2082956-CDS-H-paniculata_contig28533:2471..25581691481046.2082956-CDS-H-paniculata_contig28533:2471..2558Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28533 2472..2558 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig28533.7773.1

>prot_H-paniculata_contig28533.7773.1 ID=prot_H-paniculata_contig28533.7773.1|Name=mRNA_H-paniculata_contig28533.7773.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=178bp
VVTDYAKILDDDSINCVVELMGGVTHAKDVVFEAIRRNKHVITANKALVA
AHLDDIQNLLKEHPGVTFGYEAAVCGGIPIIATLQNDYPGDKILKVCGIM
NGTTNFMLSKMESEGADYGDVLKEAQDLGFAEADPTADVEGLDVQAKIAL
LTKLAFGATVSSDSVRLKNKKLPYMNP*
back to top

mRNA from alignment at H-paniculata_contig28533:243..2558-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig28533.7773.1 ID=mRNA_H-paniculata_contig28533.7773.1|Name=mRNA_H-paniculata_contig28533.7773.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2316bp|location=Sequence derived from alignment at H-paniculata_contig28533:243..2558- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGTGACAGACTACGCCAAAATCCTCGACGATGATTCCATCAACTGCGT GGTGGAGCTGATGGGGGGGGTTACTCACGCGAAGGACGTGAGTATTTTAG TATTTGGATTTTCTATTTTTTTTACCTCAGTGGTGCAGAGTGCTCTAACA GCTGGCGCCGCATCAGTGAGCAGGACATGTCGACTTGTCGCCGGCGGACA TATGCACTGGCGCGTTACTAGCTACCAGAATCCATGCTGTAGAGCTCTGT ATCATGTTCGGAGCGTTATTTTTTACTCTTCGTCGTACGAACCGGCATTC TTTCTCCTGTGTGTACCGTTTCTCCATGGATACACCCCATGGTTAATCAG TTTCATGAGGTGGCTGCGTACTAATTAATGATAAATCGACGTTTTGTACG CTGTCACCCATGGATCCTGAAGTTTAATCGGCGGCGCCAATGCGAATAGC GTCGTGTGTTTTGTGGGCCATCATGCATAACCAGGTGGTGTTTGAGGCCA TCCGGCGAAACAAGCACGTCATCACGGCGAACAAGGCCCTTGTGGCCGCT CATCTCGACGACATCCAGAATCTGCTGAAGGAACACCCGGGGGTAACCTT TGGATACGAGGCTGCGGTATGCGGTGGTGAGCATCGACTGACATCAGGCG TTTTATTGCACCGTGTTACCCGAAGCCTCAACCATTTTGCGAGATATTTT GTCCGTGTCAATGCCTCATGGAGGAGTATTGGTAGCGCTCTCAGATGCGC TGTTTTTACCCCCCTGTCTGTGGATTATTGCTCACGAGACGTGATCGCTG ACTCATGACAGCAATCTGCACGTGCTCACTTGTTGCTGGACTAGACTTGT TGAATGATGTGCACGTAATTGTGCCGAGTACCTCGCTCACGCCCCGTCGT GCTTTTCTCTAGCAAATCTTGAGGGCAAGCATCGTGCGCATGGATTTCTT TCTTTTCAAACTTGAATTTGTGCGTACCTGGAACGTTTTCTTCGCCTATG TGGTCTTTGTGTATTTTTTTATGTGGCGCACTTTTCAGGCATCCCGATCA TCGCTACGCTACAGAATGACTACCCGGGAGACAAGATTCTCAAGGTAAGA GCGAGTTGGAGAGAATCGAGAAAAACAAAGAGACAGGCAGGTAAACAGAC GGGAGACACATAGAATCTTGGGCATCTCGAACTTTTGCTAGATGTGCTAT TGATCGTGTGTACCCAATGTCTCATGTCTCAACAGTATTTATGACTTCGT CTCTAATAGCCACTTATCGTCTTTTGACCCGATCCTGCACCTGTCAGCAC GACAATTGATCCCTTGGGTATCCTCGCGGTGTGTTGTGCCTTGACCCTGC TTGTTGGTGAACCACCTCCCTCGACATGGCAGGACTTCGTATTGCTTCAG TTCTACTTGGGTCATGAGTGATAGAATAGCGAGATACGCCTACTCCATTG AACGGAATGTCCGCTAACGGCGATATAGACGAAACGGGCACTGTGTTTTG TTTTCCTCTCCTCACAGATGCTTATTTACCTCTCGGCGTAAATATTTGGT AAATCTGCGACACGGCACAAAATTACGGTCAAGCGAAAACAATCTCGACA AGAATCGCCCTCTTGTGCTTGAAAATGATGTGGAAACAAGGTGTGCGGCA TCATGAATGGCACGACGAATTTCATGCTCTCCAAGATGGAGAGCGAGGGT GCTGACTACGGCGACGTTTTAAAGGAGGCTCAGGACTTGGGTTTTGCCGA GGGTATGTACCTTGCTGGCCGCGACTCTGACTGACGGAATTTTCTCGTGT TTTACACACACGCAGCTCTTTCTCTTGTCAATATTGGTGGGATTTTGAAA ACAAAGAAGACTTGAAAGTTGGCCTAATGCTGTTGATATGCGGTACCGAG GGGGAAATCGGGAAGAGGCGTCTCCTAGTAGGAGGTCGGCAACACGCTCG GGATAAGGCGTGCAGGAGGACCTTACTTTTCATCTACAACCATACTTTTC ATGTATAATCCTCGAGAGCAGTGTTTTGGGTGACGAACACCTCTTGTGGA CACCGCTTTCGAATTTGTAGCCTTGTGTACCACTCGCTTACTCTGGATCT TGTCTCTCTACCCCTCCCTCCCTCCCTCTCCCGCTGTCTTTCTGCCCGCG GGATTTGCTCGCACATTCCATTTTGTCAGCCGACCCTACCGCGGATGTGG AGGGGTTAGACGTGCAGGCTAAGATTGCTCTTCTCACTAAGTTAGCGTTC GGTGCTACTGTGTCGTCCGACTCGGTGAGACTAAAAAACAAAAAGCTGCC CTACATGAATCCTTGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig28533:243..2558-

>mRNA_H-paniculata_contig28533.7773.1 ID=mRNA_H-paniculata_contig28533.7773.1|Name=mRNA_H-paniculata_contig28533.7773.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1068bp|location=Sequence derived from alignment at H-paniculata_contig28533:243..2558- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGTGACAGACTACGCCAAAATCCTCGACGATGATTCCATCAACTGCGT
GGTGGAGCTGATGGGGGGGGTTACTCACGCGAAGGACGTGGTGACAGACT
ACGCCAAAATCCTCGACGATGATTCCATCAACTGCGTGGTGGAGCTGATG
GGGGGGGTTACTCACGCGAAGGACGTGGTGTTTGAGGCCATCCGGCGAAA
CAAGCACGTCATCACGGCGAACAAGGCCCTTGTGGCCGCTCATCTCGACG
ACATCCAGAATCTGCTGAAGGAACACCCGGGGGTAACCTTTGGATACGAG
GCTGCGGTATGCGGTGGTGGTGTTTGAGGCCATCCGGCGAAACAAGCACG
TCATCACGGCGAACAAGGCCCTTGTGGCCGCTCATCTCGACGACATCCAG
AATCTGCTGAAGGAACACCCGGGGGTAACCTTTGGATACGAGGCTGCGGT
ATGCGGTGGCATCCCGATCATCGCTACGCTACAGAATGACTACCCGGGAG
ACAAGATTCTCAAGGCATCCCGATCATCGCTACGCTACAGAATGACTACC
CGGGAGACAAGATTCTCAAGGTGTGCGGCATCATGAATGGCACGACGAAT
TTCATGCTCTCCAAGATGGAGAGCGAGGGTGCTGACTACGGCGACGTTTT
AAAGGAGGCTCAGGACTTGGGTTTTGCCGAGGGTGTGCGGCATCATGAAT
GGCACGACGAATTTCATGCTCTCCAAGATGGAGAGCGAGGGTGCTGACTA
CGGCGACGTTTTAAAGGAGGCTCAGGACTTGGGTTTTGCCGAGGCCGACC
CTACCGCGGATGTGGAGGGGTTAGACGTGCAGGCTAAGATTGCTCTTCTC
ACTAAGTTAGCGTTCGGTGCTACTGTGTCGTCCGACTCGGTGAGACTAAA
AAACAAAAAGCTGCCCTACATGAATCCTTGACCGACCCTACCGCGGATGT
GGAGGGGTTAGACGTGCAGGCTAAGATTGCTCTTCTCACTAAGTTAGCGT
TCGGTGCTACTGTGTCGTCCGACTCGGTGAGACTAAAAAACAAAAAGCTG
CCCTACATGAATCCTTGA
back to top