mRNA_H-paniculata_contig285.7770.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig285.7770.1
Unique NamemRNA_H-paniculata_contig285.7770.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig285.7770.1 vs. uniprot
Match: D7FY26_ECTSI (1,3-beta-glucan synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY26_ECTSI)

HSP 1 Score: 132 bits (331), Expect = 8.660e-34
Identity = 62/93 (66.67%), Postives = 70/93 (75.27%), Query Frame = 1 
Query:   10 LPPKSSIHSLHRKLFINYKDWCEAMRVRPYFHPPAESPSNDRTGLV------DKNEEDALAVDIMLWLCLWGEAGNLRHMPECLCFLFHKMMQ 270
            LPPK++IHSL  KLF NY+DWCE+MR+ P F P    P ND  G        DK EEDAL +D+MLWLC+WGEAGNLRHMPECLCFLFHKMMQ
Sbjct:  309 LPPKNAIHSLPAKLFRNYRDWCESMRIAPCFMP--HPPPNDGYGGGHGDSGRDKLEEDALMMDLMLWLCMWGEAGNLRHMPECLCFLFHKMMQ 399
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BLAST of mRNA_H-paniculata_contig285.7770.1 vs. uniprot
Match: A0A6H5JFR3_9PHAE (1,3-beta-glucan synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFR3_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 8.740e-34
Identity = 62/95 (65.26%), Postives = 71/95 (74.74%), Query Frame = 1 
Query:    4 ASLPPKSSIHSLHRKLFINYKDWCEAMRVRPYFHPPAESPSNDRTGLV------DKNEEDALAVDIMLWLCLWGEAGNLRHMPECLCFLFHKMMQ 270
            A +P K++IHSLH KLF NY+DWCE+MR+ P F P    P ND  G        DK EEDAL +D+MLWLC+WGEAGNLRHMPECLCFLFHKMMQ
Sbjct:  206 ALVPHKTAIHSLHAKLFRNYRDWCESMRIAPCFMP--HPPPNDGYGGGHGDSGRDKLEEDALMMDLMLWLCMWGEAGNLRHMPECLCFLFHKMMQ 298
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BLAST of mRNA_H-paniculata_contig285.7770.1 vs. uniprot
Match: A0A7S3JXC1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JXC1_9STRA)

HSP 1 Score: 100 bits (250), Expect = 9.200e-25
Identity = 43/78 (55.13%), Postives = 52/78 (66.67%), Query Frame = 1 
Query:   25 SIHSLHRKLFINYKDWCEAMRVRPYFHPPAESPSNDRTGLVDKNEEDALAVDIMLWLCLWGEAGNLRHMPECLCFLFH 258
            ++ +LH KLF NY+ WC A+  RP + PPAES          + E    A DIMLWLC+WGEA NLRHMPECLCFL+H
Sbjct:  105 AVRALHAKLFGNYRTWCAALETRPQYAPPAES----------RLEAGGAATDIMLWLCIWGEAANLRHMPECLCFLYH 172
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BLAST of mRNA_H-paniculata_contig285.7770.1 vs. uniprot
Match: A0A835Z1S2_9STRA (1,3-beta-glucan synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1S2_9STRA)

HSP 1 Score: 102 bits (255), Expect = 1.600e-23
Identity = 46/90 (51.11%), Postives = 59/90 (65.56%), Query Frame = 1 
Query:   16 PKSSIHSLHRKLFINYKDWCEAMRVRPYFHPPAESPSND-----RTGLVDKNEE-DALAVDIMLWLCLWGEAGNLRHMPECLCFLFHKMM 267
            P + +HSLH KLF NY+ WC+ + V P F P A++           G V + +E  AL  DIML++C+WGE  NLRHMPECLCFL+HKMM
Sbjct:  491 PATGVHSLHAKLFENYRGWCKNLNVPPCFTPVADASKGSGGPFAAPGNVSQQDEVQALLTDIMLYMCIWGEGANLRHMPECLCFLYHKMM 580
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BLAST of mRNA_H-paniculata_contig285.7770.1 vs. uniprot
Match: A0A835Z4B5_9STRA (1,3-beta-glucan synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4B5_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 5.870e-21
Identity = 43/99 (43.43%), Postives = 58/99 (58.59%), Query Frame = 1 
Query:   10 LPPKSSIHSLHRKLFINYKDWCEAMRVRPYFHPPAESPSNDR------------TGLVDKNEEDALAVDIMLWLCLWGEAGNLRHMPECLCFLFHKMMQ 270
            L P + +HSLH +LF NY+ WC+ + V+P F P                     T    ++E  +L  D+ML++C+WGEA NLRHMPE LCFL+HKMMQ
Sbjct:  178 LLPSTGVHSLHARLFENYRGWCKTLNVQPKFTPTRGGXXXXXXXXXXXXXXAFATPTNQQDEVSSLMTDVMLYMCVWGEAANLRHMPESLCFLYHKMMQ 276
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BLAST of mRNA_H-paniculata_contig285.7770.1 vs. uniprot
Match: A0A7S2UV76_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UV76_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 6.810e-21
Identity = 40/86 (46.51%), Postives = 54/86 (62.79%), Query Frame = 1 
Query:   13 PPKSSIHSLHRKLFINYKDWCEAMRVRPYFHPPAESPSNDRTGLVDKNEEDALAVDIMLWLCLWGEAGNLRHMPECLCFLFHKMMQ 270
            P  + IHSLH K+F NY  WC  + V   F P    P N+ T      +   +A+D+ML+L +WGE+ N+RHMPE +CFL+HKMMQ
Sbjct:  240 PQVTPIHSLHPKIFQNYSQWCSYLGVPAKFMPAPAGPQNETT------QSRVMAMDVMLYLLIWGESANIRHMPEVICFLYHKMMQ 319
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BLAST of mRNA_H-paniculata_contig285.7770.1 vs. uniprot
Match: A0A7S1UZ62_9STRA (1,3-beta-glucan synthase n=2 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UZ62_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 2.790e-20
Identity = 43/88 (48.86%), Postives = 53/88 (60.23%), Query Frame = 1 
Query:    7 SLPPKSSIHSLHRKLFINYKDWCEAMRVRPYFHPPAESPSNDRTGLVDKNEEDALAVDIMLWLCLWGEAGNLRHMPECLCFLFHKMMQ 270
            S+ P S IH+LH K+F NY  WC AM   P F       S   T +       +  VD++LW C+WGEA NLRHMPECL FL+HKMM+
Sbjct:  333 SVQPPSPIHALHAKVFSNYMKWCRAMSCPPNF-------SKMNTSMSAPPAVASRVVDLVLWFCVWGEAANLRHMPECLWFLYHKMME 413
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BLAST of mRNA_H-paniculata_contig285.7770.1 vs. uniprot
Match: A0A7S2NTT3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NTT3_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.100e-19
Identity = 37/86 (43.02%), Postives = 54/86 (62.79%), Query Frame = 1 
Query:   16 PKSSIHSLHRKLFINYKDWCEAMRVRPYFHPPAESPSNDRTGLVDKNEEDALAVDIMLWLCLWGEAGNLRHMPECLCFLFHKMMQA 273
            P S IH+LH K+F NY  WC+AM V+P F        +    +V +       VD++L+ C+WGE+ N+RHMPECL +L+H MM++
Sbjct:   39 PHSPIHALHAKVFSNYVKWCKAMSVKPNFAKMNTMCVSGPPAVVSR------VVDLVLFFCIWGESANIRHMPECLWYLYHSMMES 118
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BLAST of mRNA_H-paniculata_contig285.7770.1 vs. uniprot
Match: A0A7S4R501_9STRA (1,3-beta-glucan synthase (Fragment) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R501_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.320e-19
Identity = 40/90 (44.44%), Postives = 54/90 (60.00%), Query Frame = 1 
Query:    1 EASLPPKSSIHSLHRKLFINYKDWCEAMRVRPYFHPPAESPSNDRTGLVDKNEEDALAVDIMLWLCLWGEAGNLRHMPECLCFLFHKMMQ 270
            +A + P S IH++H K+F NY  WC AM V P F       S   + +       +  VD++LW C+WGE  NLRHMPEC+ FL+HKMM+
Sbjct:  336 QAHVQPPSPIHAMHAKMFSNYMKWCRAMGVPPNF-------SKMNSSMSAPPAVASRVVDLVLWFCIWGEGANLRHMPECMWFLYHKMME 418
[Close]
BLAST of mRNA_H-paniculata_contig285.7770.1 vs. uniprot
Match: K0R724_THAOC (FKS1_dom1 domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R724_THAOC)

HSP 1 Score: 87.8 bits (216), Expect = 2.870e-18
Identity = 40/88 (45.45%), Postives = 54/88 (61.36%), Query Frame = 1 
Query:    7 SLPPKSSIHSLHRKLFINYKDWCEAMRVRPYFHPPAESPSNDRTGLVDKNEEDALAVDIMLWLCLWGEAGNLRHMPECLCFLFHKMMQ 270
            +L P S IH+LH K+F NY  WC    V P F   + + S    G+       +  VD++L+ C+WGEA N+RHMPECL FL+HKMM+
Sbjct:  357 ALQPPSPIHALHAKVFSNYMKWCRYQGVSPNFSKLSPTSSG---GMTAPPNVASRVVDLVLFFCVWGEACNIRHMPECLWFLYHKMME 441
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig285.7770.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FY26_ECTSI8.660e-3466.671,3-beta-glucan synthase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5JFR3_9PHAE8.740e-3465.261,3-beta-glucan synthase n=1 Tax=Ectocarpus sp. CC... [more]
A0A7S3JXC1_9STRA9.200e-2555.13Hypothetical protein (Fragment) n=1 Tax=Aureoumbra... [more]
A0A835Z1S2_9STRA1.600e-2351.111,3-beta-glucan synthase n=1 Tax=Tribonema minus T... [more]
A0A835Z4B5_9STRA5.870e-2143.431,3-beta-glucan synthase n=1 Tax=Tribonema minus T... [more]
A0A7S2UV76_9STRA6.810e-2146.51Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S1UZ62_9STRA2.790e-2048.861,3-beta-glucan synthase n=2 Tax=Grammatophora oce... [more]
A0A7S2NTT3_9STRA1.100e-1943.02Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A7S4R501_9STRA1.320e-1944.441,3-beta-glucan synthase (Fragment) n=2 Tax=Ditylu... [more]
K0R724_THAOC2.870e-1845.45FKS1_dom1 domain-containing protein n=1 Tax=Thalas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig285contigH-paniculata_contig285:25932..27824 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score130.6
Seed ortholog evalue3.8e-28
Seed eggNOG ortholog2880.D7FY26
KEGG koko:K11000
Hectar predicted targeting categoryother localisation
EggNOG free text desc.1,3-beta-D-glucan synthase activity
EggNOG OGsKOG0916@1,KOG0916@2759
COG Functional cat.S
CAZyGT48
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01003
Exons2
Model size275
Cds size273
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929866.614322-CDS-H-paniculata_contig285:25931..260901622929866.614322-CDS-H-paniculata_contig285:25931..26090Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig285 25932..26090 +
1691481045.718752-CDS-H-paniculata_contig285:25931..260901691481045.718752-CDS-H-paniculata_contig285:25931..26090Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig285 25932..26090 +
1622929866.6310773-CDS-H-paniculata_contig285:27709..278231622929866.6310773-CDS-H-paniculata_contig285:27709..27823Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig285 27710..27823 +
1691481045.7327614-CDS-H-paniculata_contig285:27709..278231691481045.7327614-CDS-H-paniculata_contig285:27709..27823Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig285 27710..27823 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig285.7770.1prot_H-paniculata_contig285.7770.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig285 25932..27823 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig285.7770.1

>prot_H-paniculata_contig285.7770.1 ID=prot_H-paniculata_contig285.7770.1|Name=mRNA_H-paniculata_contig285.7770.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=91bp
EASLPPKSSIHSLHRKLFINYKDWCEAMRVRPYFHPPAESPSNDRTGLVD
KNEEDALAVDIMLWLCLWGEAGNLRHMPECLCFLFHKMMQA
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mRNA from alignment at H-paniculata_contig285:25932..27824+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig285.7770.1 ID=mRNA_H-paniculata_contig285.7770.1|Name=mRNA_H-paniculata_contig285.7770.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1893bp|location=Sequence derived from alignment at H-paniculata_contig285:25932..27824+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGCCTCGTTGCCCCCAAAATCGTCGATCCACAGCCTCCATCGCAAGCT
GTTCATAAACTACAAGGATTGGTGCGAGGCGATGCGCGTGCGGCCTTACT
TTCATCCGCCGGCCGAGAGCCCCTCAAATGACCGCACGGGACTGGTCGAC
AAGAATGAGGTAATACGTGGTGACTTGCTGGCGTTCATCTCCACCGAAAT
ATTTTCGAGACTTCCAACTGACTTGTTTCTTCCTCTGTTGAATACAGCCG
GCGGCAGGCCTCATTTGTAGGACCCATAATTGTATCCAGTAAGCCCTATA
TTTCGTATTAAGCGCGCCGGTTGGTTTACTTTTGGTGTGTTATCGTTGGC
TTGGAATGTGGAGATCAGGACCATTCCTGATGTTCCTAGGAAGCAGTAAC
GTTTTTTTTACATTATCGGCACAGCGTTTCTAGTTGCTTCCGACCCCAGG
TGATCACTTGATCGCCTACAGAACCAAGCCAAAGGGCGTGCTACGCACGA
CATCCCAAGACTTCAGAATCAATCCGCGGAGCCGGTGGTGTCCGCTCTAT
TACAATAGAGCTGTTCTCTCGTGGGAGCATCGTGGCCTCACGAAGCTTTT
ACTGGTTTTGATGCATAATGCCAGTCATGCGATTTCCCCGGCAATCAAGA
TTGCACGTGCCGTTTATCATACTCGAAGGATCAACGTACAGTAGACCGAT
CCTGACGTTTCCAAACTGTCATTGAATACGAAATTAGGGTCCTATATAAG
TAGCGGTAGAATCTTCTATGAACAAATAGACTATCGCTACGCCCGTTTGG
TTCGTGCTTGTCCTCGACCCACAGACTCGCTGTGCTCGTAGTAACTTGGT
ACGCTGGCGTTTGAGTATTTGGTTTTCAGGAGGTTCTTGAGTACAGATTT
GAAATGCTGTTCCCAAACAATGACGATGGCCACCTCTACGTATTACAGCA
ATGAAGAAAGATGCACGGATTTTAAACCTGATGGGATCCGTGCCCCCGTT
TTTTCGGCCAACGTTTTCCTTATTTTTTTCTGGGTGTTGAATGTAACGGT
ATTTCAAAGATGAAAAAACGGAACGGTAAATGATTTACTCGGTAGTGTGT
CGGTAAACGACATATCGGTAGCACGGCACGGTACGGTACGGTATAAATGT
TTACTCGGTATTTGCGCGGTAAGTGTTATTCGTTTTTTTTCCCCCGCGGT
ACCGTGCTGTATTGTACGGTATTTTGTCTTGTCCGTATCATGCGGTACGG
TATCCGGTACTTGGCACGATATTTCGGTTCCCTAACGTTGCCCAAGCGTA
AGGTATAAAATACGGCCATAAAATCCGTGCGTGTAGTAAATGGTGTGTAC
GGGGAGTTCCACAAGAGGGCGACTCATTTATTTCGAGAGTTCGTTCCAAG
GACTTGTAAATTCCGCAGTGTGAAGGCACGGTATCGGTACGGTAACAGGG
TTTCACGCTGCGATAACGGGAAATGGCCTTGACACCGCGATAAGCACGTT
TGGCTGTTCCGTGCACGGTAACGGTAAAGGGAAAGTCGAGCTTTTTACGG
TGTCGGTGCCGAGTGCCGAATATCGCGCAATATCGCGGTGTATTTTACGT
CTTTTTTACCTGATTTTTTTGAACTGGCGCTTTCTGATTTTTTCGAAGCG
TGTGTGTCTGTGTCTGTGTCTGTGTCTGTGTTTTATATTTATTCGTTCAT
CACTGATTCCCTCATTGCTTTTCTCTCCTCTGGTCTCCTGTGTTTTCCTC
TTTTTGTTTGTTGGGTTTTTCTACGTAGGAGGATGCTCTTGCGGTGGACA
TTATGCTTTGGCTCTGCTTGTGGGGTGAGGCGGGAAACCTGCGCCACATG
CCCGAATGTCTTTGCTTCCTCTTCCACAAGATGATGCAGGCGA
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Coding sequence (CDS) from alignment at H-paniculata_contig285:25932..27824+

>mRNA_H-paniculata_contig285.7770.1 ID=mRNA_H-paniculata_contig285.7770.1|Name=mRNA_H-paniculata_contig285.7770.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=546bp|location=Sequence derived from alignment at H-paniculata_contig285:25932..27824+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGCCTCGTTGCCCCCAAAATCGTCGATCCACAGCCTCCATCGCAAGCT
GTTCATAAACTACAAGGATTGGTGCGAGGCGATGCGCGTGCGGCCTTACT
TTCATCCGCCGGCCGAGAGCCCCTCAAATGACCGCACGGGACTGGTCGAC
AAGAATGAGGAAGCCTCGTTGCCCCCAAAATCGTCGATCCACAGCCTCCA
TCGCAAGCTGTTCATAAACTACAAGGATTGGTGCGAGGCGATGCGCGTGC
GGCCTTACTTTCATCCGCCGGCCGAGAGCCCCTCAAATGACCGCACGGGA
CTGGTCGACAAGAATGAGGAGGATGCTCTTGCGGTGGACATTATGCTTTG
GCTCTGCTTGTGGGGTGAGGCGGGAAACCTGCGCCACATGCCCGAATGTC
TTTGCTTCCTCTTCCACAAGATGATGCAGGCGGAGGATGCTCTTGCGGTG
GACATTATGCTTTGGCTCTGCTTGTGGGGTGAGGCGGGAAACCTGCGCCA
CATGCCCGAATGTCTTTGCTTCCTCTTCCACAAGATGATGCAGGCG
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