mRNA_H-paniculata_contig285.7769.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig285.7769.1
Unique NamemRNA_H-paniculata_contig285.7769.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig285.7769.1 vs. uniprot
Match: A0A6H5JFR3_9PHAE (1,3-beta-glucan synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFR3_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 2.530e-13
Identity = 34/56 (60.71%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:    4 RKTWTY-SNNDTWNYFDTENLPRAMDIHKDSIFVAADNVANEFGFQDDNVRNQVEH 168
            R TWTY  N+++WNYFDT+ LP  + I+ +S    AD +AN FGFQDDNVRNQVEH
Sbjct:  128 RTTWTYPDNHNSWNYFDTDALPHGLRINAESALSCADELANSFGFQDDNVRNQVEH 183
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BLAST of mRNA_H-paniculata_contig285.7769.1 vs. uniprot
Match: D7FY26_ECTSI (1,3-beta-glucan synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY26_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 3.450e-13
Identity = 34/56 (60.71%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:    4 RKTWTYSNN-DTWNYFDTENLPRAMDIHKDSIFVAADNVANEFGFQDDNVRNQVEH 168
            R TWTY +N ++WNYFDT+ LP  + I+ +S    AD +AN FGFQDDNVRNQVEH
Sbjct:  247 RTTWTYPDNQNSWNYFDTDALPHGLRINAESALSCADELANSFGFQDDNVRNQVEH 302
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BLAST of mRNA_H-paniculata_contig285.7769.1 vs. uniprot
Match: A0A835Z1S2_9STRA (1,3-beta-glucan synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1S2_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 4.570e-10
Identity = 29/55 (52.73%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:    4 RKTWTYSNNDTWNYFDTENLPRAMDIHKDSIFVAADNVANEFGFQDDNVRNQVEH 168
            +KT+TY +N  +NYF  + LP A+  + +  +  AD +AN FGFQDDNVRNQVEH
Sbjct:  406 QKTFTYPDNQAYNYFHPDKLPPALQAYAEVTYFTADQLANFFGFQDDNVRNQVEH 460
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BLAST of mRNA_H-paniculata_contig285.7769.1 vs. uniprot
Match: A0A835Z4B5_9STRA (1,3-beta-glucan synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4B5_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 5.580e-9
Identity = 28/55 (50.91%), Postives = 38/55 (69.09%), Query Frame = 1 
Query:    4 RKTWTYSNNDTWNYFDTENLPRAMDIHKDSIFVAADNVANEFGFQDDNVRNQVEH 168
            +KT+TY  N  +NYF  + LP A+  + +  +  A+ +AN FGFQDDNVRNQVEH
Sbjct:  101 QKTFTYPVNQAYNYFHPDRLPPALQAYAEVTYFTAEQLANFFGFQDDNVRNQVEH 155
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BLAST of mRNA_H-paniculata_contig285.7769.1 vs. uniprot
Match: A0A7S2UV76_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UV76_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 8.680e-8
Identity = 26/55 (47.27%), Postives = 38/55 (69.09%), Query Frame = 1 
Query:    4 RKTWTYSNNDTWNYFDTENLPRAMDIHKDSIFVAADNVANEFGFQDDNVRNQVEH 168
            ++T+ Y  N  +NYFD  +LP+ +    +++F AA+ + N FGFQDDNVRNQ EH
Sbjct:  154 QRTFEYPVNQAFNYFDPSDLPQQVADFAETVFSAAEELGNFFGFQDDNVRNQAEH 208
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BLAST of mRNA_H-paniculata_contig285.7769.1 vs. uniprot
Match: A0A7S3JXC1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JXC1_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 8.190e-7
Identity = 25/46 (54.35%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:   34 TWNYFDTENLPRAMDIHKDSIFVAADNVANEFGFQDDNVRNQVEHA 171
            T+N FD E LP  ++   +S+F +AD + N FGF DDNVRNQ EHA
Sbjct:   27 TYNIFDPEMLPSTLERFANSMFTSADALGNFFGFMDDNVRNQAEHA 72
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BLAST of mRNA_H-paniculata_contig285.7769.1 vs. uniprot
Match: F0YA81_AURAN (1,3-beta-glucan synthase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YA81_AURAN)

HSP 1 Score: 49.3 bits (116), Expect = 2.630e-5
Identity = 23/45 (51.11%), Postives = 30/45 (66.67%), Query Frame = 1 
Query:   37 WNYFDTENLPRAMDIHKDSIFVAADNVANEFGFQDDNVRNQVEHA 171
            +N FD E LP A+      +F +++ + N FGFQDDNVRNQ EHA
Sbjct:  249 YNLFDPEALPEALKRFAPEVFASSEALGNFFGFQDDNVRNQAEHA 293
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig285.7769.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JFR3_9PHAE2.530e-1360.711,3-beta-glucan synthase n=1 Tax=Ectocarpus sp. CC... [more]
D7FY26_ECTSI3.450e-1360.711,3-beta-glucan synthase n=1 Tax=Ectocarpus silicu... [more]
A0A835Z1S2_9STRA4.570e-1052.731,3-beta-glucan synthase n=1 Tax=Tribonema minus T... [more]
A0A835Z4B5_9STRA5.580e-950.911,3-beta-glucan synthase n=1 Tax=Tribonema minus T... [more]
A0A7S2UV76_9STRA8.680e-847.27Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S3JXC1_9STRA8.190e-754.35Hypothetical protein (Fragment) n=1 Tax=Aureoumbra... [more]
F0YA81_AURAN2.630e-551.111,3-beta-glucan synthase n=1 Tax=Aureococcus anoph... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig285contigH-paniculata_contig285:23626..24239 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.0
Seed ortholog evalue1e-10
Seed eggNOG ortholog2880.D7FY26
KEGG koko:K11000
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.1,3-beta-D-glucan synthase activity
EggNOG OGsKOG0916@1,KOG0916@2759
COG Functional cat.S
CAZyGT48
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01003
Exons2
Model size171
Cds size171
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929866.5523548-CDS-H-paniculata_contig285:23625..237111622929866.5523548-CDS-H-paniculata_contig285:23625..23711Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig285 23626..23711 +
1691481045.6834936-CDS-H-paniculata_contig285:23625..237111691481045.6834936-CDS-H-paniculata_contig285:23625..23711Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig285 23626..23711 +
1622929866.5725565-CDS-H-paniculata_contig285:24154..242391622929866.5725565-CDS-H-paniculata_contig285:24154..24239Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig285 24155..24239 +
1691481045.7015648-CDS-H-paniculata_contig285:24154..242391691481045.7015648-CDS-H-paniculata_contig285:24154..24239Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig285 24155..24239 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig285.7769.1prot_H-paniculata_contig285.7769.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig285 23626..24239 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig285.7769.1

>prot_H-paniculata_contig285.7769.1 ID=prot_H-paniculata_contig285.7769.1|Name=mRNA_H-paniculata_contig285.7769.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=57bp
MRKTWTYSNNDTWNYFDTENLPRAMDIHKDSIFVAADNVANEFGFQDDNV
RNQVEHA
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mRNA from alignment at H-paniculata_contig285:23626..24239+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig285.7769.1 ID=mRNA_H-paniculata_contig285.7769.1|Name=mRNA_H-paniculata_contig285.7769.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=614bp|location=Sequence derived from alignment at H-paniculata_contig285:23626..24239+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGGAAGACGTGGACATACTCAAACAACGATACCTGGAACTACTTCGA
CACGGAGAATCTACCGCGCGCAATGGATATCCACAAGTGCGTGCGATAGG
ATACAACATTGTCGTGCTCCGGACTGACGCTTTCATATGGTTTGTTGTTG
TTGTTACTGTTGTCAAAAAGTTTACGTATCTGATAGGTATATACTTGATG
CATACATAAGATGGCTCCATCCTGCAGTGAGTATCCCAGTAAAGTTGGGA
TGTTGGGGATTAGCGCTGTTTGTACAGTAGAGTCTGAAAGTTGCCGATGT
TTTGCTGGTGTTGAGCTGCTGCTGCTGCTGCTACTGTTTAGAATGACATA
TGGTCCCGTTTTCGGCCATCAATTTCATCGGTCCATGCATCTCATTCACT
CTTCAAACCCATTCATCCATCTATCCATCCCCACATCCGTCCATCCTTAC
ATCTATCCCTATCTATATCCATTCATCCGCCAACCAATCCTATTATATCA
ACCAATCTGAATGAACCAAACACGATCAGGGACAGCATCTTTGTCGCCGC
CGATAACGTCGCGAATGAGTTCGGGTTCCAGGACGACAACGTGAGAAACC
AAGTCGAGCACGCC
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Coding sequence (CDS) from alignment at H-paniculata_contig285:23626..24239+

>mRNA_H-paniculata_contig285.7769.1 ID=mRNA_H-paniculata_contig285.7769.1|Name=mRNA_H-paniculata_contig285.7769.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=342bp|location=Sequence derived from alignment at H-paniculata_contig285:23626..24239+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGGAAGACGTGGACATACTCAAACAACGATACCTGGAACTACTTCGA
CACGGAGAATCTACCGCGCGCAATGGATATCCACAAATGAGGAAGACGTG
GACATACTCAAACAACGATACCTGGAACTACTTCGACACGGAGAATCTAC
CGCGCGCAATGGATATCCACAAGGACAGCATCTTTGTCGCCGCCGATAAC
GTCGCGAATGAGTTCGGGTTCCAGGACGACAACGTGAGAAACCAAGTCGA
GCACGCCGGACAGCATCTTTGTCGCCGCCGATAACGTCGCGAATGAGTTC
GGGTTCCAGGACGACAACGTGAGAAACCAAGTCGAGCACGCC
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