mRNA_H-paniculata_contig28480.7766.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig28480.7766.1
Unique NamemRNA_H-paniculata_contig28480.7766.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig28480.7766.1 vs. uniprot
Match: A0A6H5KDX4_9PHAE (Kinesin-like protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDX4_9PHAE)

HSP 1 Score: 289 bits (740), Expect = 3.750e-90
Identity = 193/341 (56.60%), Postives = 215/341 (63.05%), Query Frame = 1
Query:    4 SIVRYVEIYNNVFHNLLEGVDRARDDDSATSKNKQVGPSPHICVFDTPFRTIAPCKLASLQVAPPVTPPPPSKIEVREHPSRGVFLSGGKGLRVPVSSAAAVAALVSTGAKARATAATSLNDRSSRSHAILILEIEATQQSPET-------------GDGSGGARHARVETSDGG-----------GIPKASRRRRG---------SIVDCVSIGKMQVIDLAGSERVLLSGVEGTALVEAQNINLSLTLLGDVLSALSRYHRAVGRSAVAGTPPGAGVVGYAGGVARVAGAGPDKPFIPYRNSKLTYLLKDSLGGNCKTLMVCAVRAAPAFFQQTMMSLR 927
             + RYVEIYNNVFHNLLEGV         TS N++ G S H           +                  +KIEVREHPSRGVFLSGGKGLRVPVSSA AVA LV+ G K+R TA+T LNDRSSRSHAI+ILEIEAT   P               GD  GG   +      G            G+ K    RRG         SIV+CVSIGKMQ+IDLAGSERV +S VEG++LVEAQNINLSLTLLGDVL++LS+YHRA  RS+ AG   GAG    A    R    G +KPF+PYRNSKLTYLLKDSLGGNCKTLMVCAVRAAPAFFQQTMMSLR
Sbjct:   36 DVTRYVEIYNNVFHNLLEGVA------DGTSGNRR-GKSSHN--GGARLSAGSXXXXXXXXXXXXXXXXXSTKIEVREHPSRGVFLSGGKGLRVPVSSADAVAGLVARGTKSRRTASTGLNDRSSRSHAIMILEIEATHSPPSAXXXXXXXXXXRARGDAVGGPSSSAPSGGLGSSNPVAGGVGSLGVAKVGAGRRGXXXXXXXXXSIVECVSIGKMQLIDLAGSERVSMSEVEGSSLVEAQNINLSLTLLGDVLNSLSKYHRASARSSSAGGMEGAGSSSGAPPAGRGRAVG-EKPFVPYRNSKLTYLLKDSLGGNCKTLMVCAVRAAPAFFQQTMMSLR 366          
BLAST of mRNA_H-paniculata_contig28480.7766.1 vs. uniprot
Match: D8LT23_ECTSI (Kinesin motor domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT23_ECTSI)

HSP 1 Score: 272 bits (695), Expect = 2.110e-78
Identity = 188/338 (55.62%), Postives = 205/338 (60.65%), Query Frame = 1
Query:   13 RYVEIYNNVFHNLLEGVDRARDDDSATSKNKQVGPSPHICVFDTPFRTIAPCKLASLQVAPPVTPPPPSKIEVREHPSRGVFLSGGKGLRVPVSSAAAVAALVSTGAKARATAATSLNDRSSRSHAILILEIEATQQSPET-------------GDGSGGARHARVETSDGGGIPKAS-------------RR-------RRGSIVDCVSIGKMQVIDLAGSERVLLSGVEGTALVEAQNINLSLTLLGDVLSALSRYHRAVGRSAVAGTPPGAGVVGYAGGVARVAGAGPDKPFIPYRNSKLTYLLKDSLGGNCKTLMVCAVRAAPAFFQQTMMSLR 927
            RYVEIYNNVFHNLLEGV         TS N++ G S H                              +KIEVREHPSRGVFLSGGKGLRVPVSSA AVAALV+ G K+R TA+T LNDRSSRSHAILILEIEAT   P               GD  GG   +      G   P A              RR       RR SIV+CVSIGKMQ+IDLAGSERV +S VEG++LVEAQNINLSLTLLGDVL++LS+YHRA  RS                        G +KPF+PYRNSKLTYLLKDSLGGNCKTLMVCAVRAAPA FQQTMMSLR
Sbjct:    7 RYVEIYNNVFHNLLEGVA------DGTSGNRR-GKSSHN--GGARLSADGXXXXXXXXXXXXXXXXXSTKIEVREHPSRGVFLSGGKGLRVPVSSANAVAALVARGTKSRRTASTGLNDRSSRSHAILILEIEATHSPPSAXXXXXXXXXXRARGDAVGGPSSSVPSGGLGSSNPAAGGVGPLGVARVGAGRRGXXXXXXRRRSIVECVSIGKMQLIDLAGSERVSMSEVEGSSLVEAQNINLSLTLLGDVLNSLSKYHRASARSXXXXXXXXXXXXXXXXXXXXXRAVG-EKPFVPYRNSKLTYLLKDSLGGNCKTLMVCAVRAAPACFQQTMMSLR 334          
BLAST of mRNA_H-paniculata_contig28480.7766.1 vs. uniprot
Match: A0A835Z8L1_9STRA (Kinesin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8L1_9STRA)

HSP 1 Score: 179 bits (454), Expect = 8.040e-50
Identity = 116/258 (44.96%), Postives = 144/258 (55.81%), Query Frame = 1
Query:  112 GPSPHICVFDTPFRTIAPCKLASLQVAPPVTPPPPSKIEVREHPSRGVFLSGGKGLRVPVSSAAAVAALVSTGAKARATAATSLNDRSSRSHAILILEIEATQQSPETGDGSGGARHARVETSDGGGIPKASRRRRGSIVDCVSIGKMQVIDLAGSERVLLSGVEGTALVEAQNINLSLTLLGDVLSALSRYHRAVGRSAVAGTPPGAGVVGYAGGVARVAGAGPDKPFIPYRNSKLTYLLKDSLGGNCKTLMVCAVR 885
            GP   I +    F  I      SL  AP  T     KIE+RE P+RGV+L+GG  LR+PV+       L+  G + RAT+ T++N+RSSRSHAIL  E+E +  S                                     V +GK+Q+IDLAGSERV LSG EG+ L EAQ+INLSL+LLGDVLSALS+YHRAV +   + T                     ++PFIPYRNSKLT+LLKDSLGGNCKTLMVC +R
Sbjct:  143 GPQQTIFMVTISFVEIYNNTFVSLLSAPSATTDGNQKIEIRESPTRGVYLTGGTNLRLPVTCTEEAMQLIHRGMEKRATSCTNMNERSSRSHAILTFEVERSTAS-------------------------------------VRVGKLQLIDLAGSERVGLSGAEGSVLAEAQSINLSLSLLGDVLSALSKYHRAVSKGLASAT---------------------ERPFIPYRNSKLTHLLKDSLGGNCKTLMVCCIR 342          
BLAST of mRNA_H-paniculata_contig28480.7766.1 vs. uniprot
Match: A0A7S4E6T1_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E6T1_9STRA)

HSP 1 Score: 150 bits (379), Expect = 2.440e-36
Identity = 102/236 (43.22%), Postives = 134/236 (56.78%), Query Frame = 1
Query:  217 SKIEVREHPSRGVFLSGGKGLRVPVSSAAAVAALVSTGAKARATAATSLNDRSSRSHAILILEIEATQQSPETGDGSGGARHARVETSDGGGIPKASRRRRGSIVDCVSIGKMQVIDLAGSERVLLSGVEGTALVEAQNINLSLTLLGDVLSALSRYHRAVGRSAVAGTPPGAGVVGYAGGVARVAGAGPDKPFIPYRNSKLTYLLKDSLGGNCKTLMVCAVRAAPAFFQQTMMSL 924
            +KIE+RE    GVFL+G   L+V V+S   V  L+S G KARA A T  ND SSRSH IL L +++ + S    D    A                        +  V +GK+ ++DLAGSERV LSG +G  LVEAQNINLSL LLGDVL+ALSR                  + G  G   +   +G  +  +PYRNSKLTYLLKDSLGGN KTLM+  +R++  +++Q+++SL
Sbjct:  191 TKIEIRESRDTGVFLTGPSNLKVAVTSEQEVQELISLGDKARAYALTRCNDHSSRSHCILTLHVQSQRASIALQDPQNAA------------------------LTSVHVGKLNLVDLAGSERVSLSGAQGETLVEAQNINLSLALLGDVLAALSRNS----------------LRGEQG--TQFPRSGGSREPVPYRNSKLTYLLKDSLGGNSKTLMITTLRSSETYYRQSLVSL 384          
BLAST of mRNA_H-paniculata_contig28480.7766.1 vs. uniprot
Match: F0YE27_AURAN (Kinesin-like protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YE27_AURAN)

HSP 1 Score: 140 bits (354), Expect = 1.880e-35
Identity = 116/305 (38.03%), Postives = 147/305 (48.20%), Query Frame = 1
Query:   10 VRYVEIYNNVFHNLLEGVDRARDDDSATSKNKQVGPSPHICVFDTPFRTIAPCKLASLQVAPPVTPPPPSKIEVREHPSRGVFLSGGKGLRVPVSSAAAVAALVSTGAKARATAATSLNDRSSRSHAILILEIEATQQSPETGDGSGGARHARVETSDGGGIPKASRRRRGSIVDCVSIGKMQVIDLAGSERVLLSGVEGTALVEAQNINLSLTLLGDVLSALSRYHRAVGRSAVAGTPPGAGVVGYAGGVARVAGAGPDKPFIPYRNSKLTYLLKDSLGGNCKTLMVCAVRAAPAFFQQTMMSL 924
            V YVE+YNNVF NLLE  DR    D A S+ K                                       IE+RE    G+FL G   L+VPV S   V  LV+ G + R  A+T+ N+ SSRSH +L L +E                               SR    +   C  +GK+ ++DLAGSERV +SG EG  LVEAQNINLSL LLGDVL+ALSR            T P            +     P +P +PYRNSKLT+LLKDSLGGN KTLM+  +RA   +++Q+++SL
Sbjct:   90 VSYVELYNNVFRNLLE--DRH---DHAPSQGK---------------------------------------IEIRESRDSGIFLGGPPNLKVPVKSERDVRDLVAFGDRQRQYASTNCNEHSSRSHCVLTLHVE-------------------------------SRWTESNRHSC-RLGKLNLVDLAGSERVAVSGAEGETLVEAQNINLSLALLGDVLAALSRN----------ATRP------------KSQSPRPPEP-VPYRNSKLTHLLKDSLGGNSKTLMITNLRAHRDYYRQSLVSL 295          
BLAST of mRNA_H-paniculata_contig28480.7766.1 vs. uniprot
Match: A0A2R5G630_9STRA (Kinesin-like protein KIF3A n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G630_9STRA)

HSP 1 Score: 144 bits (364), Expect = 2.360e-34
Identity = 112/303 (36.96%), Postives = 143/303 (47.19%), Query Frame = 1
Query:   16 YVEIYNNVFHNLLEGVDRARDDDSATSKNKQVGPSPHICVFDTPFRTIAPCKLASLQVAPPVTPPPPSKIEVREHPSRGVFLSGGKGLRVPVSSAAAVAALVSTGAKARATAATSLNDRSSRSHAILILEIEATQQSPETGDGSGGARHARVETSDGGGIPKASRRRRGSIVDCVSIGKMQVIDLAGSERVLLSGVEGTALVEAQNINLSLTLLGDVLSALSRYHRAVGRSAVAGTPPGAGVVGYAGGVARVAGAGPDKPFIPYRNSKLTYLLKDSLGGNCKTLMVCAVRAAPAFFQQTMMSL 924
            YVE+YNN F +LL     A+  D+++S +             T  R                       IE+    S  VFLSG   L  PV+SA     L+  G++ RA  AT  N+ SSRSHAIL   +E+                          IP A+            +GK+ ++DLAGSER+ LS  EG  L E QNINLSL+ LGDVLSALSR H +                G   G  R A A  D+  +PYRNSKLT+LLKDSLGGN KTLM+  +R    + QQT+M+L
Sbjct:  170 YVELYNNQFKDLLYS--HAQHGDASSSASTAXXXXXXXXXXSTSHR-----------------------IELHTTKSGSVFLSGTPSLHTPVTSAQEALRLIQLGSRNRAVGATDCNEHSSRSHAILTFYVESR-------------------------IPSAN-----GATSVAKLGKLHLVDLAGSERLTLSKAEGQTLTETQNINLSLSTLGDVLSALSRLHSS----------------GSKAGSRRAATAA-DRACVPYRNSKLTFLLKDSLGGNSKTLMIATIRTPDLYQQQTLMTL 400          
BLAST of mRNA_H-paniculata_contig28480.7766.1 vs. uniprot
Match: A0A5A8D404_CAFRO (Kinesin motor domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D404_CAFRO)

HSP 1 Score: 132 bits (333), Expect = 2.470e-30
Identity = 111/308 (36.04%), Postives = 156/308 (50.65%), Query Frame = 1
Query:   16 YVEIYNNVFHNLLEGVDRARDDDSATSKNKQVGPSPHICVFDTPFRTIAPCKLASL--QVAPPVTPPPPSKIEVREHPSRGVFLSGGKGLRVPVSSAAAVAALVSTGAKARATAATSLNDRSSRSHAILILEIEATQQSPETGDGSGGARHARVETSDGGGIPKASRRRRGSIVDCVSIGKMQVIDLAGSERVLLSGV--EGTALVEAQNINLSLTLLGDVLSALSRYHRAVGRSAVAGTPPGAGVVGYAGGVARVAGAGPDKPFIPYRNSKLTYLLKDSLGGNCKTLMVCAVRAAPAFFQQTMMSLR 927
            YVE+YNN F +LL     A D   A +  + +  + +    D    + A    +     +A   +P  P KI +RE  SRGVFL G   LRVPVSS      LV+ G + RA  AT LN  SSRSHAI+I+++E+  +     D            +  G   +  RRRR      V +G++ V+DLAGSER+ +SG   +   L E Q+INLSLT+L DVLS L+            GT P                       +PYRNSKLT+LL+DSLGG+ +T+M+  VR     ++QT+++L+
Sbjct:  217 YVELYNNNFRDLLHKSAAAGDAVRAETTARSLADAFNGADADEATSSSASAAASGQPQNMADRDSPSGP-KISIRESRSRGVFLEGSPTLRVPVSSVVDCLRLVAEGTRNRAVGATDLNAHSSRSHAIVIIDVESIAKDSADEDAXXXXXXXXXXVTASG---RPRRRRRAP----VRLGRLCVVDLAGSERLSMSGAWRDEARLAETQSINLSLTVLADVLSTLAEAK---------GTAP---------------------VMVPYRNSKLTFLLRDSLGGSARTVMLVHVRPTSPHYRQTLVTLQ 486          
BLAST of mRNA_H-paniculata_contig28480.7766.1 vs. uniprot
Match: A0A5A8DZ16_CAFRO (Kinesin motor domain-containing protein n=5 Tax=Sar TaxID=2698737 RepID=A0A5A8DZ16_CAFRO)

HSP 1 Score: 132 bits (333), Expect = 2.630e-30
Identity = 111/308 (36.04%), Postives = 156/308 (50.65%), Query Frame = 1
Query:   16 YVEIYNNVFHNLLEGVDRARDDDSATSKNKQVGPSPHICVFDTPFRTIAPCKLASL--QVAPPVTPPPPSKIEVREHPSRGVFLSGGKGLRVPVSSAAAVAALVSTGAKARATAATSLNDRSSRSHAILILEIEATQQSPETGDGSGGARHARVETSDGGGIPKASRRRRGSIVDCVSIGKMQVIDLAGSERVLLSGV--EGTALVEAQNINLSLTLLGDVLSALSRYHRAVGRSAVAGTPPGAGVVGYAGGVARVAGAGPDKPFIPYRNSKLTYLLKDSLGGNCKTLMVCAVRAAPAFFQQTMMSLR 927
            YVE+YNN F +LL     A D   A +  + +  + +    D    + A    +     +A   +P  P KI +RE  SRGVFL G   LRVPVSS      LV+ G + RA  AT LN  SSRSHAI+I+++E+  +     D            +  G   +  RRRR      V +G++ V+DLAGSER+ +SG   +   L E Q+INLSLT+L DVLS L+            GT P                       +PYRNSKLT+LL+DSLGG+ +T+M+  VR     ++QT+++L+
Sbjct:  217 YVELYNNNFRDLLHKSAAAGDAVRAETTARSLADAFNGADADEATSSSASAAASGQPQNMADRDSPSGP-KISIRESRSRGVFLEGSPTLRVPVSSVVDCLRLVAEGTRNRAVGATDLNAHSSRSHAIVIIDVESIAKDSADEDAXXXXXXXXXXVTASG---RPRRRRRAP----VRLGRLCVVDLAGSERLSMSGAWRDEARLAETQSINLSLTVLADVLSTLAEAK---------GTAP---------------------VMVPYRNSKLTFLLRDSLGGSARTVMLVHVRPTSPHYRQTLVTLQ 486          
BLAST of mRNA_H-paniculata_contig28480.7766.1 vs. uniprot
Match: A0A5A8CVH4_CAFRO (Kinesin motor domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CVH4_CAFRO)

HSP 1 Score: 132 bits (333), Expect = 2.900e-30
Identity = 115/310 (37.10%), Postives = 160/310 (51.61%), Query Frame = 1
Query:   16 YVEIYNNVFHNLLEGVDRARDDDSATSKNKQVGPSPHICVFDTPFRTIAPCKLASL--QVAPPVTPPPPSKIEVREHPSRGVFLSGGKGLRVPVSSAAAVAALVSTGAKARATAATSLNDRSSRSHAILILEIE--ATQQSPETGDGSGGARHARVETSDGGGIPKASRRRRGSIVDCVSIGKMQVIDLAGSERVLLSGV--EGTALVEAQNINLSLTLLGDVLSALSRYHRAVGRSAVAGTPPGAGVVGYAGGVARVAGAGPDKPFIPYRNSKLTYLLKDSLGGNCKTLMVCAVRAAPAFFQQTMMSLR 927
            YVE+YNN F +LL     A D   A +  + +  + +    +    + A    +     +A   +P  P KI +RE  SRGVFL G   LRVPVSS      LV+ G + RA  AT LN  SSRSHAI+I+++E  A   + E    +  A    V  S   G P+  RRRR      V +G++ V+DLAGSER+ +SG   +   L E Q+INLSLT+L DVLS L+            GT P                       +PYRNSKLT+LL+DSLGG+ +T+M+  VR     ++QT+++L+
Sbjct: 1480 YVELYNNNFRDLLHKSAAAGDAVRAETTARSLADAFNGADAEEATSSSASAAASGQPQNMADRDSPSGP-KISIRESRSRGVFLEGSPTLRVPVSSVVDCLRLVAEGTRNRAVGATDLNAHSSRSHAIVIIDVESIAKDSADEDAVAAAAATPGAVTAS---GRPR--RRRRAP----VRLGRLCVVDLAGSERLSMSGAWRDEARLAETQSINLSLTVLADVLSTLAEAK---------GTAP---------------------VMVPYRNSKLTFLLRDSLGGSARTVMLVHVRPTSPHYRQTLVTLQ 1749          
BLAST of mRNA_H-paniculata_contig28480.7766.1 vs. uniprot
Match: A0A7S0UXL5_9CHLO (Kinesin-like protein (Fragment) n=1 Tax=Polytomella parva TaxID=51329 RepID=A0A7S0UXL5_9CHLO)

HSP 1 Score: 115 bits (289), Expect = 5.810e-25
Identity = 85/241 (35.27%), Postives = 123/241 (51.04%), Query Frame = 1
Query:  208 PPPSKIEVREHPSRGVFLSGGKGLRVPVSSAAAVAALVSTGAKARATAATSLNDRSSRSHAILILEIE-ATQQSPETGDGSGGARHARVETSDGGGIPKASRRRRGSIVDCVSIGKMQVIDLAGSERVLLSGVEGTALVEAQNINLSLTLLGDVLSALSRYHRAVGRSAVAGTPPGAGVVGYAGGVARVAGAGPDKPFIPYRNSKLTYLLKDSLGGNCKTLMVCAVRAAPAFFQQTMMSLR 927
            P  S + +RE   RGVF+ G       V S   V  L+  G   R T AT LN+ SSRSHA+ I+ +E  T  S   GDGS  +R    ++S  GG    S     +    + +GK+ ++DLAGSERV ++G  G  L E++ IN SL+ LG+V+SAL+                                   ++  +PYR+SKLT +L+DSLGGNC+T M+C    +   FQ+T+ +L+
Sbjct:  196 PERSNLAIREDKRRGVFVEGLS--EWVVRSPGEVYQLMQQGQTMRTTGATKLNEVSSRSHAVCIIIVEKCTTASNFPGDGSDPSRMFGRDSSSMGGGSSGS-----TATQSIKVGKLNLVDLAGSERVAVTGAVGKRLEESKRINASLSALGNVISALTDRRS-------------------------------ERGHVPYRDSKLTRILEDSLGGNCRTTMICTAAPSMESFQETLSTLK 398          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28480.7766.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KDX4_9PHAE3.750e-9056.60Kinesin-like protein n=1 Tax=Ectocarpus sp. CCAP 1... [more]
D8LT23_ECTSI2.110e-7855.62Kinesin motor domain-containing protein n=1 Tax=Ec... [more]
A0A835Z8L1_9STRA8.040e-5044.96Kinesin-like protein n=1 Tax=Tribonema minus TaxID... [more]
A0A7S4E6T1_9STRA2.440e-3643.22Hypothetical protein n=3 Tax=Pelagomonas calceolat... [more]
F0YE27_AURAN1.880e-3538.03Kinesin-like protein (Fragment) n=1 Tax=Aureococcu... [more]
A0A2R5G630_9STRA2.360e-3436.96Kinesin-like protein KIF3A n=1 Tax=Hondaea ferment... [more]
A0A5A8D404_CAFRO2.470e-3036.04Kinesin motor domain-containing protein n=1 Tax=Ca... [more]
A0A5A8DZ16_CAFRO2.630e-3036.04Kinesin motor domain-containing protein n=5 Tax=Sa... [more]
A0A5A8CVH4_CAFRO2.900e-3037.10Kinesin motor domain-containing protein n=1 Tax=Ca... [more]
A0A7S0UXL5_9CHLO5.810e-2535.27Kinesin-like protein (Fragment) n=1 Tax=Polytomell... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig28480contigH-paniculata_contig28480:637..2632 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score277.7
Seed ortholog evalue7.5e-72
Seed eggNOG ortholog2880.D8LT23
KEGG koko:K10401,ko:K11498
Hectar predicted targeting categoryother localisation
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG0242@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko03036,ko04812
Exons4
Model size1071
Cds size1071
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig28480.7766.1prot_H-paniculata_contig28480.7766.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig28480 637..2632 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929866.1932044-CDS-H-paniculata_contig28480:636..11491622929866.1932044-CDS-H-paniculata_contig28480:636..1149Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28480 637..1149 -
1691481045.4920387-CDS-H-paniculata_contig28480:636..11491691481045.4920387-CDS-H-paniculata_contig28480:636..1149Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28480 637..1149 -
1622929866.2240295-CDS-H-paniculata_contig28480:1549..18191622929866.2240295-CDS-H-paniculata_contig28480:1549..1819Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28480 1550..1819 -
1691481045.504563-CDS-H-paniculata_contig28480:1549..18191691481045.504563-CDS-H-paniculata_contig28480:1549..1819Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28480 1550..1819 -
1622929866.2362223-CDS-H-paniculata_contig28480:2222..24001622929866.2362223-CDS-H-paniculata_contig28480:2222..2400Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28480 2223..2400 -
1691481045.5151331-CDS-H-paniculata_contig28480:2222..24001691481045.5151331-CDS-H-paniculata_contig28480:2222..2400Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28480 2223..2400 -
1622929866.250357-CDS-H-paniculata_contig28480:2522..26321622929866.250357-CDS-H-paniculata_contig28480:2522..2632Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28480 2523..2632 -
1691481045.5257452-CDS-H-paniculata_contig28480:2522..26321691481045.5257452-CDS-H-paniculata_contig28480:2522..2632Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28480 2523..2632 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig28480.7766.1

>prot_H-paniculata_contig28480.7766.1 ID=prot_H-paniculata_contig28480.7766.1|Name=mRNA_H-paniculata_contig28480.7766.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=357bp
MSIVRYVEIYNNVFHNLLEGVDRARDDDSATSKNKQVGPSPHICVFDTPF
RTIAPCKLASLQVAPPVTPPPPSKIEVREHPSRGVFLSGGKGLRVPVSSA
AAVAALVSTGAKARATAATSLNDRSSRSHAILILEIEATQQSPETGDGSG
GARHARVETSDGGGIPKASRRRRGSIVDCVSIGKMQVIDLAGSERVLLSG
VEGTALVEAQNINLSLTLLGDVLSALSRYHRAVGRSAVAGTPPGAGVVGY
AGGVARVAGAGPDKPFIPYRNSKLTYLLKDSLGGNCKTLMVCAVRAAPAF
FQQTMMSLRCVYVCVQRVRLCNRGAFRTNGGGGGGGGGGGGGGGGGGGQL
VYTMETV
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mRNA from alignment at H-paniculata_contig28480:637..2632-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig28480.7766.1 ID=mRNA_H-paniculata_contig28480.7766.1|Name=mRNA_H-paniculata_contig28480.7766.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1996bp|location=Sequence derived from alignment at H-paniculata_contig28480:637..2632- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCAATCGTAAGGTACGTCGAGATTTACAACAACGTATTTCATAACCT GCTGGAGGGCGTAGATCGTGCTAGGGACGACGATAGCGCCACGAGCAAGA ACAAGCAGGTGTGACAACAGGAAAAATGTTCGGCTATCTGCGATATGGAG GTGCGTGGGTGGGAGTTTACCAGCTTATTGTAACTACTGAGTGAACAGTT GTCATTCGTCATCGCTTCTGTTAATGACTCAGCGGCCCTTCGCCGCATAT TTGTGTCTTCGATACACCTTTCCGTACCATCGCGCCGTGCAAACTGGCGT CTTTGCAGGTGGCGCCGCCGGTGACACCACCTCCTCCATCCAAGATCGAG GTCCGAGAGCACCCGTCTCGCGGCGTATTTCTTTCCGGGGGCAAAGGCCT TCGCGTGCCGGTAAATCACGCTAAGCAGGCCGGCCGCTCTTTTCTTCAAG CTGGATAGTACGGGTACCGCGAGTACTAGCACACAAACTTGGTACGAGTT ATTTTTTAGGATTTCAATATTTTTGGGTGGAGCTCGAGGAGACATGAAAT CAGGCATTTCGTGGCGCGCAGGTGCAAAACAGACTTTGCTGTCCAAGGGA ATTTATCGATTGATCGTGTCCGTTAGAAGCAGGCTGCAGCTTAAGTAGAT TCTATGTTAACAAACCCCTTTCCTTCAATGGTTACACATTATAACGTCTA AGACGATTCCCGTGTTTTTCGTTCAGTTGCAAAACATTTTTCGAAATCGA AACGATGCGCTCGAAAGCAGTAAGCAAACAAACTGAACGTAAGTGGATTC TCGTTTTCAATAGGTGAGCTCGGCGGCGGCGGTAGCCGCATTAGTATCGA CCGGTGCCAAGGCTCGCGCTACGGCCGCAACTAGTCTCAATGATAGGAGC AGCCGTAGTCATGCCATTCTCATTCTCGAAATCGAAGCCACACAGCAATC TCCGGAGACGGGTGATGGTTCTGGCGGGGCGCGGCACGCAAGAGTCGAGA CGAGTGACGGTGGGGGGATACCTAAGGCGTCGCGGCGAAGAAGGGGATCT ATCGTGGATTGCGTCAGCATTGGAAAAATGCAGGTGTGAGCAGGTGAATT TATGCGCATGCAAATAAACAGGGGTAACGGTGTCGTAAGATACTGCAACA GATGGAAGAGACAGATGGGGGAGGCGAGGGAGGTATCCTCATCTCACTAT CACCCCTTTGTGTGCTACGGGGGCTTCTGACTAAGCAACGCATTTTGATT GGGCTTGTGCTGTGGTGCTGGAGTCGGCCCTTTAAACTCGTCATATTCTC CGCTCGCTGACGGTGGTGGCGGTAAACTGTCTCGCCCGCTAAAGCTAACA GATTTACACTATCAGCGAAAAGGCAAACGACCGTGCCGCGAAAGTGCTGA TCCAAAGAATGCGCTCACCGCCGCATCGTACACCTCTCCGTTAATTTATT CCCGCCACGACCACCGTCTTGGCTTCGGAATAGGTCATTGACCTGGCTGG GTCTGAGCGCGTTTTATTGTCCGGAGTGGAAGGCACCGCCTTGGTAGAGG CCCAAAACATCAACTTGTCTCTAACTCTTCTGGGCGACGTGCTAAGCGCG CTGTCCAGGTATCACCGTGCAGTCGGCAGATCTGCTGTCGCAGGTACGCC GCCGGGCGCTGGCGTTGTCGGGTACGCGGGGGGCGTGGCCAGGGTCGCAG GAGCCGGCCCGGACAAGCCTTTCATTCCATACCGCAACTCGAAGTTGACG TACCTTCTGAAGGACTCGCTGGGAGGGAACTGCAAGACGCTCATGGTGTG TGCTGTGCGGGCGGCTCCGGCCTTCTTTCAGCAGACCATGATGTCGCTGA GGTGTGTGTATGTTTGTGTTCAGAGAGTACGGCTATGCAACAGAGGGGCG TTCAGGACGAACGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG GGGGGGGGGGGGGGGGGGGCAGCTGGTGTATACAATGGAGACTGTC
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Coding sequence (CDS) from alignment at H-paniculata_contig28480:637..2632-

>mRNA_H-paniculata_contig28480.7766.1 ID=mRNA_H-paniculata_contig28480.7766.1|Name=mRNA_H-paniculata_contig28480.7766.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2142bp|location=Sequence derived from alignment at H-paniculata_contig28480:637..2632- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCAATCGTAAGGTACGTCGAGATTTACAACAACGTATTTCATAACCT
GCTGGAGGGCGTAGATCGTGCTAGGGACGACGATAGCGCCACGAGCAAGA
ACAAGCAGGTATGTCAATCGTAAGGTACGTCGAGATTTACAACAACGTAT
TTCATAACCTGCTGGAGGGCGTAGATCGTGCTAGGGACGACGATAGCGCC
ACGAGCAAGAACAAGCAGGTCGGCCCTTCGCCGCATATTTGTGTCTTCGA
TACACCTTTCCGTACCATCGCGCCGTGCAAACTGGCGTCTTTGCAGGTGG
CGCCGCCGGTGACACCACCTCCTCCATCCAAGATCGAGGTCCGAGAGCAC
CCGTCTCGCGGCGTATTTCTTTCCGGGGGCAAAGGCCTTCGCGTGCCGCG
GCCCTTCGCCGCATATTTGTGTCTTCGATACACCTTTCCGTACCATCGCG
CCGTGCAAACTGGCGTCTTTGCAGGTGGCGCCGCCGGTGACACCACCTCC
TCCATCCAAGATCGAGGTCCGAGAGCACCCGTCTCGCGGCGTATTTCTTT
CCGGGGGCAAAGGCCTTCGCGTGCCGGTGAGCTCGGCGGCGGCGGTAGCC
GCATTAGTATCGACCGGTGCCAAGGCTCGCGCTACGGCCGCAACTAGTCT
CAATGATAGGAGCAGCCGTAGTCATGCCATTCTCATTCTCGAAATCGAAG
CCACACAGCAATCTCCGGAGACGGGTGATGGTTCTGGCGGGGCGCGGCAC
GCAAGAGTCGAGACGAGTGACGGTGGGGGGATACCTAAGGCGTCGCGGCG
AAGAAGGGGATCTATCGTGGATTGCGTCAGCATTGGAAAAATGCAGGTGA
GCTCGGCGGCGGCGGTAGCCGCATTAGTATCGACCGGTGCCAAGGCTCGC
GCTACGGCCGCAACTAGTCTCAATGATAGGAGCAGCCGTAGTCATGCCAT
TCTCATTCTCGAAATCGAAGCCACACAGCAATCTCCGGAGACGGGTGATG
GTTCTGGCGGGGCGCGGCACGCAAGAGTCGAGACGAGTGACGGTGGGGGG
ATACCTAAGGCGTCGCGGCGAAGAAGGGGATCTATCGTGGATTGCGTCAG
CATTGGAAAAATGCAGGTCATTGACCTGGCTGGGTCTGAGCGCGTTTTAT
TGTCCGGAGTGGAAGGCACCGCCTTGGTAGAGGCCCAAAACATCAACTTG
TCTCTAACTCTTCTGGGCGACGTGCTAAGCGCGCTGTCCAGGTATCACCG
TGCAGTCGGCAGATCTGCTGTCGCAGGTACGCCGCCGGGCGCTGGCGTTG
TCGGGTACGCGGGGGGCGTGGCCAGGGTCGCAGGAGCCGGCCCGGACAAG
CCTTTCATTCCATACCGCAACTCGAAGTTGACGTACCTTCTGAAGGACTC
GCTGGGAGGGAACTGCAAGACGCTCATGGTGTGTGCTGTGCGGGCGGCTC
CGGCCTTCTTTCAGCAGACCATGATGTCGCTGAGGTGTGTGTATGTTTGT
GTTCAGAGAGTACGGCTATGCAACAGAGGGGCGTTCAGGACGAACGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGCAGCTGGTGTATACAATGGAGACTGTCGTCATTGACCTGGCTGGGTCT
GAGCGCGTTTTATTGTCCGGAGTGGAAGGCACCGCCTTGGTAGAGGCCCA
AAACATCAACTTGTCTCTAACTCTTCTGGGCGACGTGCTAAGCGCGCTGT
CCAGGTATCACCGTGCAGTCGGCAGATCTGCTGTCGCAGGTACGCCGCCG
GGCGCTGGCGTTGTCGGGTACGCGGGGGGCGTGGCCAGGGTCGCAGGAGC
CGGCCCGGACAAGCCTTTCATTCCATACCGCAACTCGAAGTTGACGTACC
TTCTGAAGGACTCGCTGGGAGGGAACTGCAAGACGCTCATGGTGTGTGCT
GTGCGGGCGGCTCCGGCCTTCTTTCAGCAGACCATGATGTCGCTGAGGTG
TGTGTATGTTTGTGTTCAGAGAGTACGGCTATGCAACAGAGGGGCGTTCA
GGACGAACGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGCAGCTGGTGTATACAATGGAGACTGTC
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