mRNA_H-paniculata_contig28476.7764.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig28476.7764.1
Unique NamemRNA_H-paniculata_contig28476.7764.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig28476.7764.1 vs. uniprot
Match: A0A835YH16_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YH16_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 4.740e-19
Identity = 39/80 (48.75%), Postives = 57/80 (71.25%), Query Frame = 1 
Query:   25 EDHAFLVNSMPGGTSGRLDRFRVDENTSFRRLRRLIELKEERGMMRRTPLFQELLYIMVNSPNPHGYGKDQRFKYRFGFF 264
            E H+F+V S  GG +GRL+   +DE+T+  +LR+LIE++ +RGM+RRT L+QELL +M  + NPH YG +    YR G+F
Sbjct:   16 EQHSFVVASEAGGLTGRLEHVTIDEHTALGKLRQLIEVQSDRGMLRRTTLYQELLALMQRARNPHHYGSELALTYRLGYF 95
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BLAST of mRNA_H-paniculata_contig28476.7764.1 vs. uniprot
Match: A0A7S2BP03_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BP03_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 4.020e-12
Identity = 36/83 (43.37%), Postives = 53/83 (63.86%), Query Frame = 1 
Query:   13 KSAREDHAFLVNSMPGGTSGRLDRFRVDEN-TSFRRLRRLIELKEERGMMRRTPLFQELLYIMVNSPNPHGYGKDQRFKYRFG 258
            +S  E H+FLV +  GG + ++    +D N T+   LR+LIE   +RGM+RRT L+QELL +  + PNP+GY   ++  YRFG
Sbjct:   32 RSVFEQHSFLVGNEQGGLTEQIGVVPIDLNHTTLTMLRQLIEATNDRGMLRRTVLYQELLSVSNSLPNPYGYSGVEKAHYRFG 114
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BLAST of mRNA_H-paniculata_contig28476.7764.1 vs. uniprot
Match: A0A8K1FK48_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FK48_PYTOL)

HSP 1 Score: 64.3 bits (155), Expect = 8.670e-11
Identity = 33/85 (38.82%), Postives = 54/85 (63.53%), Query Frame = 1 
Query:   22 REDHAFLVNSMPGGTSGRLDRFRVD----ENTSFRRLRRLIELKEERGMMRRTPLFQELLYIMVNSPNPHGYGKDQRFKYRFGFF 264
            RE ++++V +M GG    +   ++D    E  +F +LR  IELK++ GM+RR+ +FQE++ I+V+SPNPH +       Y FG+F
Sbjct:   16 REQNSYVVGTMEGGLLPTVGTLQLDNAELETVTFAQLRPRIELKDDNGMIRRSLIFQEVMAIIVSSPNPHKWPASALQTYWFGYF 100
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BLAST of mRNA_H-paniculata_contig28476.7764.1 vs. uniprot
Match: W4GJA7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GJA7_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.870e-9
Identity = 31/81 (38.27%), Postives = 47/81 (58.02%), Query Frame = 1 
Query:   28 DHAFLVNSMPGGTSGRLDRFRV--DENTSFRRLRRLIELKEERGMMRRTPLFQELLYIMVNSPNPHGYGKDQRFKYRFGFF 264
            +H++LV S  GG S  +    +  DE+ +F  +R  IELKEE G++RR P+FQE L+ M  + NPH +       Y  G++
Sbjct:   19 EHSYLVGSAAGGLSSAIGMIVLEDDEDLTFESVRPRIELKEENGLIRRNPMFQEALFQMTEARNPHQWPMHTLQTYWLGYY 99
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BLAST of mRNA_H-paniculata_contig28476.7764.1 vs. uniprot
Match: W4GL70_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GL70_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 3.880e-9
Identity = 31/81 (38.27%), Postives = 47/81 (58.02%), Query Frame = 1 
Query:   28 DHAFLVNSMPGGTSGRLDRFRV--DENTSFRRLRRLIELKEERGMMRRTPLFQELLYIMVNSPNPHGYGKDQRFKYRFGFF 264
            +H++LV S  GG S  +    +  DE+ +F  +R  IELKEE G++RR P+FQE L+ M  + NPH +       Y  G++
Sbjct:   19 EHSYLVGSAAGGLSSAIGMIVLEDDEDLTFESVRPRIELKEENGLIRRNPMFQEALFQMTEARNPHQWPMHTLQTYWLGYY 99
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BLAST of mRNA_H-paniculata_contig28476.7764.1 vs. uniprot
Match: A0A6A5ARH1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5ARH1_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 5.950e-7
Identity = 25/57 (43.86%), Postives = 35/57 (61.40%), Query Frame = 1 
Query:   94 DENTSFRRLRRLIELKEERGMMRRTPLFQELLYIMVNSPNPHGYGKDQRFKYRFGFF 264
            DEN +F  +R  IELKEE G++RR P+FQE L+ M  + NPH +       Y  G++
Sbjct:    7 DENLTFESVRPRIELKEENGLIRRNPMFQEALFQMTEARNPHQWPMHTLQTYWLGYY 63
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BLAST of mRNA_H-paniculata_contig28476.7764.1 vs. uniprot
Match: A0A3F2RQF4_9STRA (Uncharacterized protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RQF4_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 2.030e-6
Identity = 26/85 (30.59%), Postives = 51/85 (60.00%), Query Frame = 1 
Query:   22 REDHAFLVNSMPGGTSGRLDRFRVDEN----TSFRRLRRLIELKEERGMMRRTPLFQELLYIMVNSPNPHGYGKDQRFKYRFGFF 264
            RE ++++V ++ GG    +    +++      +F +LR  IEL++++ ++RR+ +FQE+L ++  S NPHG+  +    Y FG F
Sbjct:   16 REQNSYVVGTLEGGLLPVVGTLNLEQKEVATATFAQLRTRIELQQDKDVIRRSVMFQEILALIATSANPHGWPPNVMQTYWFGHF 100
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BLAST of mRNA_H-paniculata_contig28476.7764.1 vs. uniprot
Match: A0A067C2G5_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067C2G5_SAPPC)

HSP 1 Score: 49.7 bits (117), Expect = 4.430e-5
Identity = 25/81 (30.86%), Postives = 47/81 (58.02%), Query Frame = 1 
Query:   28 DHAFLVNSMPGGTSGRLDRFRVDENT--SFRRLRRLIELKEERGMMRRTPLFQELLYIMVNSPNPHGYGKDQRFKYRFGFF 264
            +H+++V S PGG S  +    +D++   +F  +R  IEL+++  + RR  ++QE L++M +S NPH +       Y  G++
Sbjct:   19 EHSYVVGSRPGGLSSVIGMVVMDDDDDLTFESVRPRIELQQDGSVQRRHIMYQEALFLMTSSANPHQWPVKALQTYWLGYY 99
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28476.7764.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A835YH16_9STRA4.740e-1948.75Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2BP03_9STRA4.020e-1243.37Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A8K1FK48_PYTOL8.670e-1138.82Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
W4GJA7_9STRA1.870e-938.27Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
W4GL70_9STRA3.880e-938.27Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A6A5ARH1_9STRA5.950e-743.86Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A3F2RQF4_9STRA2.030e-630.59Uncharacterized protein n=1 Tax=Phytophthora kerno... [more]
A0A067C2G5_SAPPC4.430e-530.86Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig28476contigH-paniculata_contig28476:223..1023 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size288
Cds size288
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929865.992068-CDS-H-paniculata_contig28476:222..3571622929865.992068-CDS-H-paniculata_contig28476:222..357Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28476 223..357 +
1691481045.4136856-CDS-H-paniculata_contig28476:222..3571691481045.4136856-CDS-H-paniculata_contig28476:222..357Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28476 223..357 +
1622929866.0098255-CDS-H-paniculata_contig28476:870..10231622929866.0098255-CDS-H-paniculata_contig28476:870..1023Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28476 871..1023 +
1691481045.4226623-CDS-H-paniculata_contig28476:870..10231691481045.4226623-CDS-H-paniculata_contig28476:870..1023Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28476 871..1023 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig28476.7764.1prot_H-paniculata_contig28476.7764.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig28476 223..1023 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig28476.7764.1

>prot_H-paniculata_contig28476.7764.1 ID=prot_H-paniculata_contig28476.7764.1|Name=mRNA_H-paniculata_contig28476.7764.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=96bp
MSCRKSAREDHAFLVNSMPGGTSGRLDRFRVDENTSFRRLRRLIELKEER
GMMRRTPLFQELLYIMVNSPNPHGYGKDQRFKYRFGFFDGVSTDG*
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mRNA from alignment at H-paniculata_contig28476:223..1023+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig28476.7764.1 ID=mRNA_H-paniculata_contig28476.7764.1|Name=mRNA_H-paniculata_contig28476.7764.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=801bp|location=Sequence derived from alignment at H-paniculata_contig28476:223..1023+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCATGTAGGAAGAGCGCAAGGGAAGACCACGCGTTCCTCGTGAATAG
CATGCCAGGAGGGACCTCTGGGCGTCTGGATCGCTTCAGGGTAGATGAGA
ACACGAGTTTCAGGAGGCTGAGGCGACTTATCGAGGTGCAAACATAAAAT
CCCGAGCAAGCTAGTTCATCTACTCCACTATTTATTTAGCGGTCACAGAA
TGTTCCAGCTTGAGCTCTAAACTTAGCTCTTTGTAAAAGCAGAAAAATCT
TCTTCTATACGTGTACTCGTAGGCTGGAAATAGCGAGGGCGCGCGATCGG
TAGGTCAATTTTTCTTTTGATGCAAATTGAGAAAAAACGCCATTCGGATA
ACATCTGATAAATAGAATTAACAGACATGCCAGTTGTCCATCAAGTATTG
TCTGTCTGGACCCGACAAAAAGGGGCCTCACCTGTTCGTTGTGATGTAAA
TATACGACCTCGCGATTTCGTCTTACGAAAAGTTCAGTAGTTTCACGAAG
CCCTGTGGTGTAGCTGTAGCATACACCGTACGCTATACGCGAAATAGTCT
GAGCATTTTCTCACGGTACGTGCCTAGGTATGTGTCCATGTTTTATCGTT
TGCCGTCGTGCTATTATATCCGCTTGGTGTCCGTGCTATTCCATAAAGCT
GAAAGAGGAACGAGGAATGATGCGAAGGACGCCTCTATTTCAAGAGCTTT
TGTATATCATGGTGAACTCGCCTAACCCACACGGCTACGGGAAGGACCAG
CGGTTCAAGTATAGATTCGGATTCTTCGATGGGGTGAGCACTGATGGGTG
A
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Coding sequence (CDS) from alignment at H-paniculata_contig28476:223..1023+

>mRNA_H-paniculata_contig28476.7764.1 ID=mRNA_H-paniculata_contig28476.7764.1|Name=mRNA_H-paniculata_contig28476.7764.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at H-paniculata_contig28476:223..1023+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCATGTAGGAAGAGCGCAAGGGAAGACCACGCGTTCCTCGTGAATAG
CATGCCAGGAGGGACCTCTGGGCGTCTGGATCGCTTCAGGGTAGATGAGA
ACACGAGTTTCAGGAGGCTGAGGCGACTTATCGAGATGTCATGTAGGAAG
AGCGCAAGGGAAGACCACGCGTTCCTCGTGAATAGCATGCCAGGAGGGAC
CTCTGGGCGTCTGGATCGCTTCAGGGTAGATGAGAACACGAGTTTCAGGA
GGCTGAGGCGACTTATCGAGCTGAAAGAGGAACGAGGAATGATGCGAAGG
ACGCCTCTATTTCAAGAGCTTTTGTATATCATGGTGAACTCGCCTAACCC
ACACGGCTACGGGAAGGACCAGCGGTTCAAGTATAGATTCGGATTCTTCG
ATGGGGTGAGCACTGATGGGTGACTGAAAGAGGAACGAGGAATGATGCGA
AGGACGCCTCTATTTCAAGAGCTTTTGTATATCATGGTGAACTCGCCTAA
CCCACACGGCTACGGGAAGGACCAGCGGTTCAAGTATAGATTCGGATTCT
TCGATGGGGTGAGCACTGATGGGTGA
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