mRNA_H-paniculata_contig28426.7758.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig28426.7758.1
Unique NamemRNA_H-paniculata_contig28426.7758.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig28426.7758.1 vs. uniprot
Match: D7FIR2_ECTSI (TPH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIR2_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 2.620e-17
Identity = 40/48 (83.33%), Postives = 42/48 (87.50%), Query Frame = 1 
Query:   10 QGELDRIRAKIRKTPEADGDARRRHLKMLSDERVRHWPNTLEAQRQIK 153
            Q ELDRIRAK+ KTPE D DARRRHLK+LSDERV HWPNTLEAQRQ K
Sbjct:   12 QAELDRIRAKVTKTPETDADARRRHLKVLSDERVSHWPNTLEAQRQNK 59
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BLAST of mRNA_H-paniculata_contig28426.7758.1 vs. uniprot
Match: A0A6H5KEN4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEN4_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 2.440e-16
Identity = 38/48 (79.17%), Postives = 42/48 (87.50%), Query Frame = 1 
Query:   10 QGELDRIRAKIRKTPEADGDARRRHLKMLSDERVRHWPNTLEAQRQIK 153
            + ELDRIR+K+ KTPE D DARRRHLK+LSDERV HWPNTLEAQRQ K
Sbjct:   60 RAELDRIRSKVTKTPETDADARRRHLKVLSDERVSHWPNTLEAQRQNK 107
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BLAST of mRNA_H-paniculata_contig28426.7758.1 vs. uniprot
Match: A0A835YVV5_9STRA (TPH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVV5_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.100e-9
Identity = 31/51 (60.78%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:    1 MHGQGELDRIRAKIRKTPEADGDARRRHLKMLSDERVRHWPNTLEAQRQIK 153
            M  + E+  IRAK+   PE D +ARRR LK LSDERV+HWPNTLEA R  K
Sbjct:    1 MLSRAEVATIRAKVAPPPETDLEARRRELKKLSDERVKHWPNTLEATRMKK 51
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BLAST of mRNA_H-paniculata_contig28426.7758.1 vs. uniprot
Match: A0A7S3XWQ0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XWQ0_HETAK)

HSP 1 Score: 59.3 bits (142), Expect = 7.190e-9
Identity = 27/48 (56.25%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:   10 QGELDRIRAKIRKTPEADGDARRRHLKMLSDERVRHWPNTLEAQRQIK 153
            + +L R++ K++ TP +D +ARRRHLK LSD RV  WPNTLEA R+ K
Sbjct:    8 RSDLQRLKEKVKATPMSDHEARRRHLKALSDNRVSRWPNTLEANRKQK 55
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BLAST of mRNA_H-paniculata_contig28426.7758.1 vs. uniprot
Match: A0A7S4A7V2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A7V2_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 2.020e-6
Identity = 24/46 (52.17%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:   16 ELDRIRAKIRKTPEADGDARRRHLKMLSDERVRHWPNTLEAQRQIK 153
            E++R+R+  R  P+ + D R  HLK LS+ERV++WPNTL AQR+ K
Sbjct:   18 EMERLRSFTRPPPKKEEDLRNEHLKKLSEERVKNWPNTLAAQRKKK 63
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BLAST of mRNA_H-paniculata_contig28426.7758.1 vs. uniprot
Match: A0A482SB31_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SB31_9ARCH)

HSP 1 Score: 47.4 bits (111), Expect = 3.270e-5
Identity = 25/49 (51.02%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:   16 ELDRIRAKIRKTPEADGDA---RRRHLKMLSDERVRHWPNTLEAQRQIK 153
            ELDR+RA +R   E   +A   +++ LK LSDE+V++WPNTLEA R+ K
Sbjct:    9 ELDRMRASVRPMDEQPWNAALEKKKRLKALSDEKVKNWPNTLEALRKKK 57
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28426.7758.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FIR2_ECTSI2.620e-1783.33TPH domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KEN4_9PHAE2.440e-1679.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YVV5_9STRA1.100e-960.78TPH domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S3XWQ0_HETAK7.190e-956.25Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S4A7V2_9STRA2.020e-652.17Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A482SB31_9ARCH3.270e-551.02Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig28426contigH-paniculata_contig28426:2779..2946 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.0
Seed ortholog evalue2.5e-14
Seed eggNOG ortholog2880.D7FIR2
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.Trichohyalin-plectin-homology domain
EggNOG OGs2CIRV@1,2QWHX@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size168
Cds size168
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929863.7913318-CDS-H-paniculata_contig28426:2778..29461622929863.7913318-CDS-H-paniculata_contig28426:2778..2946Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28426 2779..2946 +
1691481044.9321258-CDS-H-paniculata_contig28426:2778..29461691481044.9321258-CDS-H-paniculata_contig28426:2778..2946Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28426 2779..2946 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig28426.7758.1prot_H-paniculata_contig28426.7758.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig28426 2779..2946 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig28426.7758.1

>prot_H-paniculata_contig28426.7758.1 ID=prot_H-paniculata_contig28426.7758.1|Name=mRNA_H-paniculata_contig28426.7758.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=56bp
MHGQGELDRIRAKIRKTPEADGDARRRHLKMLSDERVRHWPNTLEAQRQI
KVGRR*
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mRNA from alignment at H-paniculata_contig28426:2779..2946+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig28426.7758.1 ID=mRNA_H-paniculata_contig28426.7758.1|Name=mRNA_H-paniculata_contig28426.7758.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=168bp|location=Sequence derived from alignment at H-paniculata_contig28426:2779..2946+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCATGGCCAGGGGGAGCTTGACCGCATACGGGCAAAGATTCGTAAAAC
TCCGGAGGCTGATGGGGACGCCAGACGTCGACACCTGAAGATGCTCTCGG
ATGAAAGGGTTCGGCACTGGCCTAATACCCTTGAGGCGCAACGCCAGATC
AAAGTGGGTCGACGATAG
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Coding sequence (CDS) from alignment at H-paniculata_contig28426:2779..2946+

>mRNA_H-paniculata_contig28426.7758.1 ID=mRNA_H-paniculata_contig28426.7758.1|Name=mRNA_H-paniculata_contig28426.7758.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=336bp|location=Sequence derived from alignment at H-paniculata_contig28426:2779..2946+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCATGGCCAGGGGGAGCTTGACCGCATACGGGCAAAGATTCGTAAAAC
TCCGGAGGCTGATGGGGACGCCAGACGTCGACACCTGAAGATGCTCTCGG
ATGAAAGGGTTCGGCACTGGCCTAATACCCTTGAGGCGCAACGCCAGATC
AAAGTGGGTCGACGATAGATGCATGGCCAGGGGGAGCTTGACCGCATACG
GGCAAAGATTCGTAAAACTCCGGAGGCTGATGGGGACGCCAGACGTCGAC
ACCTGAAGATGCTCTCGGATGAAAGGGTTCGGCACTGGCCTAATACCCTT
GAGGCGCAACGCCAGATCAAAGTGGGTCGACGATAG
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