mRNA_H-paniculata_contig2842.7757.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2842.7757.1
Unique NamemRNA_H-paniculata_contig2842.7757.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2842.7757.1 vs. uniprot
Match: D7FRB4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRB4_ECTSI)

HSP 1 Score: 170 bits (430), Expect = 4.690e-48
Identity = 86/136 (63.24%), Postives = 106/136 (77.94%), Query Frame = 3 
Query:    6 ITLTLTLGALVLCTWRAGEFANRYARAASWFWIPFTLVLFAMQIFADCSTDNVGISAVWSAFVGFLFLGQRKMRDTVWKG---DASHLATVFSLVLWTGVCVYYAIVEEFMTTVAHIVAFGVGAGALLIFSWVHQL 404
            +TL LTL  L+LCT +AGE A+RY R A+WFW+PFT VLFAMQ+FADCST+NVGISAVWSA+ GF+FL   +++    +     A   AT  SL +WTGVCVYYAIVEE MTTVAH+VAFGVGAGALL+F  +H++
Sbjct:   25 VTLVLTLITLILCTRKAGERASRYPRYAAWFWVPFTSVLFAMQLFADCSTNNVGISAVWSAYAGFVFLAWWRIQHIRAENAAVSALAYATPVSLAMWTGVCVYYAIVEEAMTTVAHLVAFGVGAGALLLFEALHKI 160
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BLAST of mRNA_H-paniculata_contig2842.7757.1 vs. uniprot
Match: A0A835ZC08_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC08_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 1.830e-17
Identity = 58/139 (41.73%), Postives = 76/139 (54.68%), Query Frame = 3 
Query:   33 LVLCTWR-------AGEFANRYARAASWFWIPFTLVLFAMQIFADCSTDNVGISAVWSAFVGFLFLGQRKMRDTVWKGDASHLATVFSLVLWTGVCVYYAIVEEFMTTVAHIVAFGVGAGALLIFSWVHQLQCSSPGDD 428
            LV+CT         A +   RY   A   WIP T  LF +QI ADC  D  GISAVW+A  GFL +G R M   +++   + LAT  +L    G+ VYYA+VE+ +T+VAH VAFGVG     +     Q+   + GDD
Sbjct:   25 LVVCTTAVAVVLRPASKHCRRYRNYAQSSWIPLTAGLFVLQIGADCGADAEGISAVWAAQAGFLAVGWRLM-PAMYRPRPARLATAAALSTALGLTVYYAMVEDAITSVAHAVAFGVGCALSRLHRRFFQIH-DAGGDD 161
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BLAST of mRNA_H-paniculata_contig2842.7757.1 vs. uniprot
Match: A0A836CLZ2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLZ2_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 5.410e-11
Identity = 48/126 (38.10%), Postives = 61/126 (48.41%), Query Frame = 3 
Query:   12 LTLTLGALVLCTWRAGEFANRYARAASWFWIPFTLVLFAMQIFADCSTDN-------VGISAVWSAFVGFLFLGQRKMRDTVWKGDASHLATVFSLVLWTGVCVYYAIVEEFMTTVAHIVAFGVGA 368
            L LT  AL L    AG+ A R  R A   W+P T +L A+Q+FADC+ D         GISA+W+A  G+L      +        A+                YYA+ E  +TTVAHIVA GVGA
Sbjct:   26 LVLTTAALQLSLRGAGDVAARAPRCARAAWLPVTALLLALQVFADCAADEQASRRAMCGISAIWAAHAGWLATALVILHPLFDGAPAARAXXXXXXXXXXXXXXYYAVAEPPLTTVAHIVAAGVGA 151
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2842.7757.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FRB4_ECTSI4.690e-4863.24Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZC08_9STRA1.830e-1741.73Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CLZ2_9STRA5.410e-1138.10Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2842contigH-paniculata_contig2842:15117..17562 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_002520.1
Exons2
Model size1158
Cds size333
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2842.7757.1prot_H-paniculata_contig2842.7757.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2842 15814..17434 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929863.7220612-UTR-H-paniculata_contig2842:15116..158131622929863.7220612-UTR-H-paniculata_contig2842:15116..15813Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2842 15117..15813 -
1691481044.882752-UTR-H-paniculata_contig2842:15116..158131691481044.882752-UTR-H-paniculata_contig2842:15116..15813Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2842 15117..15813 -
1622929863.7647946-UTR-H-paniculata_contig2842:17434..175621622929863.7647946-UTR-H-paniculata_contig2842:17434..17562Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2842 17435..17562 -
1691481044.9227672-UTR-H-paniculata_contig2842:17434..175621691481044.9227672-UTR-H-paniculata_contig2842:17434..17562Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2842 17435..17562 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929863.7316134-CDS-H-paniculata_contig2842:15813..161401622929863.7316134-CDS-H-paniculata_contig2842:15813..16140Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2842 15814..16140 -
1691481044.8945649-CDS-H-paniculata_contig2842:15813..161401691481044.8945649-CDS-H-paniculata_contig2842:15813..16140Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2842 15814..16140 -
1622929863.7449908-CDS-H-paniculata_contig2842:17428..174341622929863.7449908-CDS-H-paniculata_contig2842:17428..17434Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2842 17429..17434 -
1691481044.907183-CDS-H-paniculata_contig2842:17428..174341691481044.907183-CDS-H-paniculata_contig2842:17428..17434Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2842 17429..17434 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2842.7757.1

>prot_H-paniculata_contig2842.7757.1 ID=prot_H-paniculata_contig2842.7757.1|Name=mRNA_H-paniculata_contig2842.7757.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=111bp
MQIFADCSTDNVGISAVWSAFVGFLFLGQRKMRDTVWKGDASHLATVFSL
VLWTGVCVYYAIVEEFMTTVAHIVAFGVGAGALLIFSWVHQLQCSSPGDD
MPRVAYQGVN*
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mRNA from alignment at H-paniculata_contig2842:15117..17562-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2842.7757.1 ID=mRNA_H-paniculata_contig2842.7757.1|Name=mRNA_H-paniculata_contig2842.7757.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2446bp|location=Sequence derived from alignment at H-paniculata_contig2842:15117..17562- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGATATCACCCTGACGCTGACGCTGGGTGCACTGGTGCTTTGCACCTGG
AGGGCCGGAGAATTCGCCAATCGGTACGCTAGAGCCGCCTCTTGGTTTTG
GATCCCCTTCACGCTGGTGCTTTTCGCCATGCAGGTGAACATGCTCCTTC
GCTCTTCAAATGACTGCGCCATACTGACCCATCACCGCTTGAAGCCTCCG
TCGGGATCCATCCCCTTGTTGACGCGGAACACCCCACCCTGCCCCGCCTA
CACATATATTATGACCGTTTTTCAAAGCTCGAGGTCTCCTTCTAAGCCAT
ATCCCGGCGTGAACCGCCACCATTGACCGGCAGACAAGAGCGTCTTTTTG
CTTTTATTCCCTGAACAATTGATTCTCCGCTAAATCTCTTAAGGGCAGTG
TAGCGGCAGTGGTGTGCACAGTGCGGTGTCGACGTTTGTGCGACCTAATC
AACTGTTTTAAGGTGTGGGTGTTGGTCTCCGGCCCAGGTGTCAGGGATGC
TTGGAGGTACAGTAGAGTAGGGACGTCTTCTGCGCGTGTTCTGCTGGTAT
TTCCATTTAGAGAGGGCAACTTCAAGGCTACTTTTCAAGGATGCGACCCT
TGCTTGTACCATATAGTACTCTGGCAAACGTCCCGACGCGACCGTTTTTT
CGATCCCTATATTCTCGTAGACTACGGTGCGGCTGAAACCGGAAGTTGTG
TCTTTGGACGCGGTAACTAAGAGCATGAATTTCCAAGCCGATTGGCAATC
GTCGTCGCTTTCCCTCTCGTGCAACCCAAAGCCACCGTGGTCGCCTGATC
CATCGATCGTCTGGCATACACGCCATCTTGGGGGTGTACCGCGCAATTTT
ATCGTTACGGTCATCATTTCATCTCTTCACCACCTGCCCCCCCTTCAATC
TTGCTCAAATCGAAGCTCGTCGCATTGCCACTATGTGCAGTATAACTGCT
GTACCCGTAACTTGATTGGATCGAAATTAATAAGAGCAAAGTTGGTCTTT
TCGGTCGGCGAGGCCTGCGCCACGGATGAGCTTGCGTGTACAATCCAAAC
GAACTAGAGTCTGAATTGAATACACCTGACTTGAAAAAATGCCAGTATTT
TTGTGTATACGATAAGCGCTTGTGAACTAGGTCACGCAAAGCTGCAAATC
GACCCTCTTCTATTGAGGCTTGGATCGTTGCTCTGTTGGGAAGTGGTTGT
GCTTACAGTCTCCCGCATTAAAAAAGAAGCTGTTCACGCAAGCTCAAGCT
CACGCCTCATAATTCACCCGCCGAAATCGACACTTTTTCTGCTTTTGCTC
AATTAATTTTATCCGTTAGAGCTAAACAATGAAGACACGACAATATTCTA
GTAGGGCGTGGGTTGATTGTAGCCTGAGTCCCTGCCCCGCCCCCGCCCCC
GCCCGCTCCGCGCACTTTCAAGATCTTCGCTGATTGCAGCACCGACAATG
TGGGTATAAGCGCAGTCTGGAGCGCGTTTGTCGGCTTTCTCTTTCTGGGT
CAAAGGAAGATGAGAGACACCGTCTGGAAGGGTGATGCCAGCCACCTCGC
CACCGTCTTTTCTCTCGTGCTATGGACGGGCGTGTGCGTCTACTATGCAA
TCGTGGAAGAATTCATGACCACGGTGGCTCACATCGTAGCGTTTGGAGTT
GGCGCGGGGGCTTTGTTGATATTTTCGTGGGTGCATCAGCTCCAGTGTAG
TTCTCCAGGAGATGACATGCCCAGGGTGGCATACCAAGGGGTCAATTAAG
GGGGTGGCGGGCTGCGGGAGCCATGAGAGGAAGTGCAATATGCTTTTTTT
CGTGTGCATGCGCATCGGGGAAAACATTCATATTGTGACGTGTGAACAGG
TAATGATATATTAAGAAAAAATACCACCCGACAGATGAGCGTACTTACTT
GAAACGTTACTCGACTGTGTGGGGTTCGTAGTTTTTCTTTTCTTATATAT
TTCCTCGAAACGAATTCTGATAGAGATTGTCAACCCGTAATATTGAGGAA
GTCGAGGGCAGAGGTAAATAGCTCATGATAGATAGATGTGCGCATGATTC
GGTGCGGTTGCATGTATAACGTGGTGTGTGTTATCCGATAGGTTTTCATC
GTGTAACTGGTATTAGGTCAAGCTACTCGTGTGCCAACAGAGCAAGTTTA
CCGTTTGTTTCGTACGGTTGGAATAGATGTCAACCAAACTGTTTGTCCGT
TCCACCGTGCGAGAGGGCAAATATCTATGTATCCCCTTGATAGGGCAGCA
GCCTGATTCACAAGTTGTGCATCGTATTATACCGCCTCGTAGTGAAACAA
CAACAAGAACTGAGAGCCGTTTAAAGTGAAGCGGCGGGTAAAATAAAGAA
ATGGCTTCCGCCGGTATATTGCGGTCACCTCAGGGCTGAGGACAACCGAT
TCCCTGAAAACGGCTTAAGCTCAGCTTTTCCCAACGACATTGGAAC
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Coding sequence (CDS) from alignment at H-paniculata_contig2842:15117..17562-

>mRNA_H-paniculata_contig2842.7757.1 ID=mRNA_H-paniculata_contig2842.7757.1|Name=mRNA_H-paniculata_contig2842.7757.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at H-paniculata_contig2842:15117..17562- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGATGCAGATCTTCGCTGATTGCAGCACCGACAATGTGGGTATAAG
CGCAGTCTGGAGCGCGTTTGTCGGCTTTCTCTTTCTGGGTCAAAGGAAGA
TGAGAGACACCGTCTGGAAGGGTGATGCCAGCCACCTCGCCACCGTCTTT
TCTCTCGTGCTATGGACGGGCGTGTGCGTCTACTATGCAATCGTGGAAGA
ATTCATGACCACGGTGGCTCACATCGTAGCGTTTGGAGTTGGCGCGGGGG
CTTTGTTGATATTTTCGTGGGTGCATCAGCTCCAGTGTAGTTCTCCAGGA
GATGACATGCCCAGGGTGGCATACCAAGGGGTCAATTAAATCTTCGCTGA
TTGCAGCACCGACAATGTGGGTATAAGCGCAGTCTGGAGCGCGTTTGTCG
GCTTTCTCTTTCTGGGTCAAAGGAAGATGAGAGACACCGTCTGGAAGGGT
GATGCCAGCCACCTCGCCACCGTCTTTTCTCTCGTGCTATGGACGGGCGT
GTGCGTCTACTATGCAATCGTGGAAGAATTCATGACCACGGTGGCTCACA
TCGTAGCGTTTGGAGTTGGCGCGGGGGCTTTGTTGATATTTTCGTGGGTG
CATCAGCTCCAGTGTAGTTCTCCAGGAGATGACATGCCCAGGGTGGCATA
CCAAGGGGTCAATTAA
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