prot_H-paniculata_contig28412.7754.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig28412.7754.1
Unique Nameprot_H-paniculata_contig28412.7754.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length72
Homology
BLAST of mRNA_H-paniculata_contig28412.7754.1 vs. uniprot
Match: A0A6A3R7C4_9STRA (Copia protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3R7C4_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 5.550e-9
Identity = 28/72 (38.89%), Postives = 41/72 (56.94%), Query Frame = 0
Query:    1 PQTYTPACSSPQRKLCEDAMARELGGLVVNETCKPTSWPKRKNTVGSTWIFTYKRNHYGEVVRFKARLVAKG 72
            P +Y  A SSP+ K  ++A+ RE+   + N T      P     +G  W+F YK + +G +VR+KARLVA G
Sbjct:  171 PGSYREAMSSPEAKQWKEAVRREIRAHIRNHTWDTVRHPHGVKVIGCKWVFAYKFDEHGNIVRYKARLVALG 242          
BLAST of mRNA_H-paniculata_contig28412.7754.1 vs. uniprot
Match: A0A6A3D9Q2_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3D9Q2_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.340e-8
Identity = 27/72 (37.50%), Postives = 40/72 (55.56%), Query Frame = 0
Query:    1 PQTYTPACSSPQRKLCEDAMARELGGLVVNETCKPTSWPKRKNTVGSTWIFTYKRNHYGEVVRFKARLVAKG 72
            P +Y  A SSP+ K  ++ + RE+   + N T      P     +G  W+F YK + +G +VR+KARLVA G
Sbjct:   32 PGSYREAMSSPEAKQWKEVVRREIRAHIRNHTWNTVRRPHDVKVIGCKWVFAYKFDEHGNIVRYKARLVALG 103          
BLAST of mRNA_H-paniculata_contig28412.7754.1 vs. uniprot
Match: A0A6A4CK32_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A4CK32_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.960e-8
Identity = 27/72 (37.50%), Postives = 40/72 (55.56%), Query Frame = 0
Query:    1 PQTYTPACSSPQRKLCEDAMARELGGLVVNETCKPTSWPKRKNTVGSTWIFTYKRNHYGEVVRFKARLVAKG 72
            P +Y  A SSP+ K  ++ + RE+   + N T      P     +G  W+F YK + +G +VR+KARLVA G
Sbjct:  922 PGSYREAMSSPEAKQWKEVVRREIRAHIRNHTWNTVRRPHGVKVIGCKWVFAYKFDEHGNIVRYKARLVALG 993          
BLAST of mRNA_H-paniculata_contig28412.7754.1 vs. uniprot
Match: A0A034UZW4_BACDO (Putative mitochondrial protein AtMg00820 (Fragment) n=1 Tax=Bactrocera dorsalis TaxID=27457 RepID=A0A034UZW4_BACDO)

HSP 1 Score: 56.2 bits (134), Expect = 2.080e-8
Identity = 27/72 (37.50%), Postives = 41/72 (56.94%), Query Frame = 0
Query:    1 PQTYTPACSSPQRKLCEDAMARELGGLVVNETCKPTSWPKRKNTVGSTWIFTYKRNHYGEVVRFKARLVAKG 72
            P +   A +S      + AM +E   LV N+T      P+ +  VG  W++T KR+ +G++ +FKARLVAKG
Sbjct:   45 PNSVAEALNSDHSTEWKAAMEKEYAALVKNDTWILADLPQGQKVVGCKWVYTVKRDKFGDIKQFKARLVAKG 116          
BLAST of mRNA_H-paniculata_contig28412.7754.1 vs. uniprot
Match: A0A329RA20_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329RA20_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 4.830e-8
Identity = 28/72 (38.89%), Postives = 40/72 (55.56%), Query Frame = 0
Query:    1 PQTYTPACSSPQRKLCEDAMARELGGLVVNETCKPTSWPKRKNTVGSTWIFTYKRNHYGEVVRFKARLVAKG 72
            PQ+   A  SP  +   +A+ +E G L+ N T      PK K  + S W+F  KRN  GEV+R +AR++ KG
Sbjct:  295 PQSVDEALQSPVAEKWVEALNKEFGDLMRNNTWILVERPKGKKILSSKWVFVRKRNRRGEVIRHRARIIIKG 366          
BLAST of mRNA_H-paniculata_contig28412.7754.1 vs. uniprot
Match: A0A1U8HCI3_CAPAN (uncharacterized protein LOC107876461 n=1 Tax=Capsicum annuum TaxID=4072 RepID=A0A1U8HCI3_CAPAN)

HSP 1 Score: 57.8 bits (138), Expect = 5.000e-8
Identity = 30/55 (54.55%), Postives = 35/55 (63.64%), Query Frame = 0
Query:   18 DAMARELGGLVVNETCKPTSWPKRKNTVGSTWIFTYKRNHYGEVVRFKARLVAKG 72
            +AM  E+  L  N T    + PKRKNTVGS WI+  K    G+V RFKARLVAKG
Sbjct:  757 EAMKLEIQALEANNTWTIVNLPKRKNTVGSKWIYKIKYLANGKVERFKARLVAKG 811          
BLAST of mRNA_H-paniculata_contig28412.7754.1 vs. uniprot
Match: A0A8H8NI06_9AGAM (Copia-like polyprotein/retrotransposon n=2 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8NI06_9AGAM)

HSP 1 Score: 56.2 bits (134), Expect = 1.760e-7
Identity = 28/72 (38.89%), Postives = 38/72 (52.78%), Query Frame = 0
Query:    1 PQTYTPACSSPQRKLCEDAMARELGGLVVNETCKPTSWPKRKNTVGSTWIFTYKRNHYGEVVRFKARLVAKG 72
            P+T+  A   P   L  +AM  EL  +  ++       P  KN V   W+F YKR+  GE++R KARLV KG
Sbjct:  912 PETFQEAMRRPDANLWLEAMIEELKSIEQHQVWTLVDRPVGKNIVKCRWVFDYKRDSDGEIIRHKARLVGKG 983          
BLAST of mRNA_H-paniculata_contig28412.7754.1 vs. uniprot
Match: A0A369K6W5_HYPMA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Hypsizygus marmoreus TaxID=39966 RepID=A0A369K6W5_HYPMA)

HSP 1 Score: 56.2 bits (134), Expect = 1.760e-7
Identity = 30/74 (40.54%), Postives = 37/74 (50.00%), Query Frame = 0
Query:    1 PQTYTPACSSPQRKLCEDAMARELGGLVVNETCKPTSWPKRKNTVGSTWIFTYKRNHYGEVVRFK--ARLVAKG 72
            P  Y  A S P   +   AM RE   L      KPT  PK +  +G  W+F YK N  G ++R K  ARLVA+G
Sbjct: 1221 PDNYAQAMSHPDSAVWRSAMQREYDSLQERGVFKPTLLPKGRKAIGVRWVFDYKLNPDGSIIRGKEKARLVAQG 1294          
BLAST of mRNA_H-paniculata_contig28412.7754.1 vs. uniprot
Match: A0A8H8SJ14_9AGAM (Copia-like polyprotein/retrotransposon n=1 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8SJ14_9AGAM)

HSP 1 Score: 56.2 bits (134), Expect = 1.760e-7
Identity = 28/72 (38.89%), Postives = 38/72 (52.78%), Query Frame = 0
Query:    1 PQTYTPACSSPQRKLCEDAMARELGGLVVNETCKPTSWPKRKNTVGSTWIFTYKRNHYGEVVRFKARLVAKG 72
            P+T+  A   P   L  +AM  EL  +  ++       P  KN V   W+F YKR+  GE++R KARLV KG
Sbjct:  913 PETFQEAMRRPDANLWLEAMIEELKSIEQHQVWTLVDRPVGKNIVKCRWVFDYKRDSDGEIIRHKARLVGKG 984          
BLAST of mRNA_H-paniculata_contig28412.7754.1 vs. uniprot
Match: A0A8H8M6H5_9AGAM (Copia-like polyprotein/retrotransposon n=1 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8M6H5_9AGAM)

HSP 1 Score: 56.2 bits (134), Expect = 1.770e-7
Identity = 28/72 (38.89%), Postives = 38/72 (52.78%), Query Frame = 0
Query:    1 PQTYTPACSSPQRKLCEDAMARELGGLVVNETCKPTSWPKRKNTVGSTWIFTYKRNHYGEVVRFKARLVAKG 72
            P+T+  A   P   L  +AM  EL  +  ++       P  KN V   W+F YKR+  GE++R KARLV KG
Sbjct: 1081 PETFQEAMRRPDANLWLEAMIEELKSIEQHQVWTLVDRPVGKNIVKCRWVFDYKRDSDGEIIRHKARLVGKG 1152          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28412.7754.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A6A3R7C4_9STRA5.550e-938.89Copia protein n=2 Tax=Phytophthora fragariae TaxID... [more]
A0A6A3D9Q2_9STRA1.340e-837.50Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A4CK32_9STRA1.960e-837.50Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
A0A034UZW4_BACDO2.080e-837.50Putative mitochondrial protein AtMg00820 (Fragment... [more]
A0A329RA20_9STRA4.830e-838.89Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1U8HCI3_CAPAN5.000e-854.55uncharacterized protein LOC107876461 n=1 Tax=Capsi... [more]
A0A8H8NI06_9AGAM1.760e-738.89Copia-like polyprotein/retrotransposon n=2 Tax=Cer... [more]
A0A369K6W5_HYPMA1.760e-740.54Retrovirus-related Pol polyprotein from transposon... [more]
A0A8H8SJ14_9AGAM1.760e-738.89Copia-like polyprotein/retrotransposon n=1 Tax=Cer... [more]
A0A8H8M6H5_9AGAM1.770e-738.89Copia-like polyprotein/retrotransposon n=1 Tax=Cer... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 36..72
e-value: 6.8E-7
score: 29.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig28412contigH-paniculata_contig28412:569..784 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig28412.7754.1mRNA_H-paniculata_contig28412.7754.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig28412 569..784 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig28412.7754.1 ID=prot_H-paniculata_contig28412.7754.1|Name=mRNA_H-paniculata_contig28412.7754.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=72bp
PQTYTPACSSPQRKLCEDAMARELGGLVVNETCKPTSWPKRKNTVGSTWI
FTYKRNHYGEVVRFKARLVAKG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2