mRNA_H-paniculata_contig28412.7754.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig28412.7754.1
Unique NamemRNA_H-paniculata_contig28412.7754.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig28412.7754.1 vs. uniprot
Match: A0A6A3R7C4_9STRA (Copia protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3R7C4_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 5.550e-9
Identity = 28/72 (38.89%), Postives = 41/72 (56.94%), Query Frame = 1
Query:    1 PQTYTPACSSPQRKLCEDAMARELGGLVVNETCKPTSWPKRKNTVGSTWIFTYKRNHYGEVVRFKARLVAKG 216
            P +Y  A SSP+ K  ++A+ RE+   + N T      P     +G  W+F YK + +G +VR+KARLVA G
Sbjct:  171 PGSYREAMSSPEAKQWKEAVRREIRAHIRNHTWDTVRHPHGVKVIGCKWVFAYKFDEHGNIVRYKARLVALG 242          
BLAST of mRNA_H-paniculata_contig28412.7754.1 vs. uniprot
Match: A0A6A3D9Q2_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3D9Q2_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.340e-8
Identity = 27/72 (37.50%), Postives = 40/72 (55.56%), Query Frame = 1
Query:    1 PQTYTPACSSPQRKLCEDAMARELGGLVVNETCKPTSWPKRKNTVGSTWIFTYKRNHYGEVVRFKARLVAKG 216
            P +Y  A SSP+ K  ++ + RE+   + N T      P     +G  W+F YK + +G +VR+KARLVA G
Sbjct:   32 PGSYREAMSSPEAKQWKEVVRREIRAHIRNHTWNTVRRPHDVKVIGCKWVFAYKFDEHGNIVRYKARLVALG 103          
BLAST of mRNA_H-paniculata_contig28412.7754.1 vs. uniprot
Match: A0A6A4CK32_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A4CK32_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.960e-8
Identity = 27/72 (37.50%), Postives = 40/72 (55.56%), Query Frame = 1
Query:    1 PQTYTPACSSPQRKLCEDAMARELGGLVVNETCKPTSWPKRKNTVGSTWIFTYKRNHYGEVVRFKARLVAKG 216
            P +Y  A SSP+ K  ++ + RE+   + N T      P     +G  W+F YK + +G +VR+KARLVA G
Sbjct:  922 PGSYREAMSSPEAKQWKEVVRREIRAHIRNHTWNTVRRPHGVKVIGCKWVFAYKFDEHGNIVRYKARLVALG 993          
BLAST of mRNA_H-paniculata_contig28412.7754.1 vs. uniprot
Match: A0A034UZW4_BACDO (Putative mitochondrial protein AtMg00820 (Fragment) n=1 Tax=Bactrocera dorsalis TaxID=27457 RepID=A0A034UZW4_BACDO)

HSP 1 Score: 56.2 bits (134), Expect = 2.080e-8
Identity = 27/72 (37.50%), Postives = 41/72 (56.94%), Query Frame = 1
Query:    1 PQTYTPACSSPQRKLCEDAMARELGGLVVNETCKPTSWPKRKNTVGSTWIFTYKRNHYGEVVRFKARLVAKG 216
            P +   A +S      + AM +E   LV N+T      P+ +  VG  W++T KR+ +G++ +FKARLVAKG
Sbjct:   45 PNSVAEALNSDHSTEWKAAMEKEYAALVKNDTWILADLPQGQKVVGCKWVYTVKRDKFGDIKQFKARLVAKG 116          
BLAST of mRNA_H-paniculata_contig28412.7754.1 vs. uniprot
Match: A0A329RA20_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329RA20_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 4.830e-8
Identity = 28/72 (38.89%), Postives = 40/72 (55.56%), Query Frame = 1
Query:    1 PQTYTPACSSPQRKLCEDAMARELGGLVVNETCKPTSWPKRKNTVGSTWIFTYKRNHYGEVVRFKARLVAKG 216
            PQ+   A  SP  +   +A+ +E G L+ N T      PK K  + S W+F  KRN  GEV+R +AR++ KG
Sbjct:  295 PQSVDEALQSPVAEKWVEALNKEFGDLMRNNTWILVERPKGKKILSSKWVFVRKRNRRGEVIRHRARIIIKG 366          
BLAST of mRNA_H-paniculata_contig28412.7754.1 vs. uniprot
Match: A0A1U8HCI3_CAPAN (uncharacterized protein LOC107876461 n=1 Tax=Capsicum annuum TaxID=4072 RepID=A0A1U8HCI3_CAPAN)

HSP 1 Score: 57.8 bits (138), Expect = 5.000e-8
Identity = 30/55 (54.55%), Postives = 35/55 (63.64%), Query Frame = 1
Query:   52 DAMARELGGLVVNETCKPTSWPKRKNTVGSTWIFTYKRNHYGEVVRFKARLVAKG 216
            +AM  E+  L  N T    + PKRKNTVGS WI+  K    G+V RFKARLVAKG
Sbjct:  757 EAMKLEIQALEANNTWTIVNLPKRKNTVGSKWIYKIKYLANGKVERFKARLVAKG 811          
BLAST of mRNA_H-paniculata_contig28412.7754.1 vs. uniprot
Match: A0A8H8NI06_9AGAM (Copia-like polyprotein/retrotransposon n=2 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8NI06_9AGAM)

HSP 1 Score: 56.2 bits (134), Expect = 1.760e-7
Identity = 28/72 (38.89%), Postives = 38/72 (52.78%), Query Frame = 1
Query:    1 PQTYTPACSSPQRKLCEDAMARELGGLVVNETCKPTSWPKRKNTVGSTWIFTYKRNHYGEVVRFKARLVAKG 216
            P+T+  A   P   L  +AM  EL  +  ++       P  KN V   W+F YKR+  GE++R KARLV KG
Sbjct:  912 PETFQEAMRRPDANLWLEAMIEELKSIEQHQVWTLVDRPVGKNIVKCRWVFDYKRDSDGEIIRHKARLVGKG 983          
BLAST of mRNA_H-paniculata_contig28412.7754.1 vs. uniprot
Match: A0A369K6W5_HYPMA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Hypsizygus marmoreus TaxID=39966 RepID=A0A369K6W5_HYPMA)

HSP 1 Score: 56.2 bits (134), Expect = 1.760e-7
Identity = 30/74 (40.54%), Postives = 37/74 (50.00%), Query Frame = 1
Query:    1 PQTYTPACSSPQRKLCEDAMARELGGLVVNETCKPTSWPKRKNTVGSTWIFTYKRNHYGEVVRFK--ARLVAKG 216
            P  Y  A S P   +   AM RE   L      KPT  PK +  +G  W+F YK N  G ++R K  ARLVA+G
Sbjct: 1221 PDNYAQAMSHPDSAVWRSAMQREYDSLQERGVFKPTLLPKGRKAIGVRWVFDYKLNPDGSIIRGKEKARLVAQG 1294          
BLAST of mRNA_H-paniculata_contig28412.7754.1 vs. uniprot
Match: A0A8H8SJ14_9AGAM (Copia-like polyprotein/retrotransposon n=1 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8SJ14_9AGAM)

HSP 1 Score: 56.2 bits (134), Expect = 1.760e-7
Identity = 28/72 (38.89%), Postives = 38/72 (52.78%), Query Frame = 1
Query:    1 PQTYTPACSSPQRKLCEDAMARELGGLVVNETCKPTSWPKRKNTVGSTWIFTYKRNHYGEVVRFKARLVAKG 216
            P+T+  A   P   L  +AM  EL  +  ++       P  KN V   W+F YKR+  GE++R KARLV KG
Sbjct:  913 PETFQEAMRRPDANLWLEAMIEELKSIEQHQVWTLVDRPVGKNIVKCRWVFDYKRDSDGEIIRHKARLVGKG 984          
BLAST of mRNA_H-paniculata_contig28412.7754.1 vs. uniprot
Match: A0A8H8M6H5_9AGAM (Copia-like polyprotein/retrotransposon n=1 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8M6H5_9AGAM)

HSP 1 Score: 56.2 bits (134), Expect = 1.770e-7
Identity = 28/72 (38.89%), Postives = 38/72 (52.78%), Query Frame = 1
Query:    1 PQTYTPACSSPQRKLCEDAMARELGGLVVNETCKPTSWPKRKNTVGSTWIFTYKRNHYGEVVRFKARLVAKG 216
            P+T+  A   P   L  +AM  EL  +  ++       P  KN V   W+F YKR+  GE++R KARLV KG
Sbjct: 1081 PETFQEAMRRPDANLWLEAMIEELKSIEQHQVWTLVDRPVGKNIVKCRWVFDYKRDSDGEIIRHKARLVGKG 1152          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28412.7754.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A6A3R7C4_9STRA5.550e-938.89Copia protein n=2 Tax=Phytophthora fragariae TaxID... [more]
A0A6A3D9Q2_9STRA1.340e-837.50Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A4CK32_9STRA1.960e-837.50Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
A0A034UZW4_BACDO2.080e-837.50Putative mitochondrial protein AtMg00820 (Fragment... [more]
A0A329RA20_9STRA4.830e-838.89Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1U8HCI3_CAPAN5.000e-854.55uncharacterized protein LOC107876461 n=1 Tax=Capsi... [more]
A0A8H8NI06_9AGAM1.760e-738.89Copia-like polyprotein/retrotransposon n=2 Tax=Cer... [more]
A0A369K6W5_HYPMA1.760e-740.54Retrovirus-related Pol polyprotein from transposon... [more]
A0A8H8SJ14_9AGAM1.760e-738.89Copia-like polyprotein/retrotransposon n=1 Tax=Cer... [more]
A0A8H8M6H5_9AGAM1.770e-738.89Copia-like polyprotein/retrotransposon n=1 Tax=Cer... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig28412contigH-paniculata_contig28412:569..784 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score67.0
Seed ortholog evalue4.1e-09
Seed eggNOG ortholog7260.FBpp0244144
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Pfam:UBN2_2
EggNOG OGs38DPC@33154,3BI7U@33208,3CTS1@33213,3SH01@50557,41WYJ@6656,457GT@7147,45YIF@7214,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelDrosophilidae
Best eggNOG OGNA|NA|NA
Exons1
Model size216
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929862.7721398-CDS-H-paniculata_contig28412:568..7841622929862.7721398-CDS-H-paniculata_contig28412:568..784Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28412 569..784 +
1691481044.691801-CDS-H-paniculata_contig28412:568..7841691481044.691801-CDS-H-paniculata_contig28412:568..784Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28412 569..784 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig28412.7754.1prot_H-paniculata_contig28412.7754.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig28412 569..784 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig28412.7754.1

>prot_H-paniculata_contig28412.7754.1 ID=prot_H-paniculata_contig28412.7754.1|Name=mRNA_H-paniculata_contig28412.7754.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=72bp
PQTYTPACSSPQRKLCEDAMARELGGLVVNETCKPTSWPKRKNTVGSTWI
FTYKRNHYGEVVRFKARLVAKG
back to top

mRNA from alignment at H-paniculata_contig28412:569..784+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig28412.7754.1 ID=mRNA_H-paniculata_contig28412.7754.1|Name=mRNA_H-paniculata_contig28412.7754.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=216bp|location=Sequence derived from alignment at H-paniculata_contig28412:569..784+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCACAAACCTACACGCCAGCATGTTCATCTCCTCAGAGAAAGTTATGTGA AGACGCCATGGCACGAGAGCTGGGAGGACTAGTTGTAAACGAGACGTGTA AACCTACATCATGGCCAAAAAGGAAAAACACCGTCGGTTCTACATGGATT TTTACTTACAAGAGAAATCACTACGGAGAGGTGGTTCGTTTCAAGGCTCG CTTAGTCGCAAAAGGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig28412:569..784+

>mRNA_H-paniculata_contig28412.7754.1 ID=mRNA_H-paniculata_contig28412.7754.1|Name=mRNA_H-paniculata_contig28412.7754.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at H-paniculata_contig28412:569..784+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCACAAACCTACACGCCAGCATGTTCATCTCCTCAGAGAAAGTTATGTGA
AGACGCCATGGCACGAGAGCTGGGAGGACTAGTTGTAAACGAGACGTGTA
AACCTACATCATGGCCAAAAAGGAAAAACACCGTCGGTTCTACATGGATT
TTTACTTACAAGAGAAATCACTACGGAGAGGTGGTTCGTTTCAAGGCTCG
CTTAGTCGCAAAAGGGCCACAAACCTACACGCCAGCATGTTCATCTCCTC
AGAGAAAGTTATGTGAAGACGCCATGGCACGAGAGCTGGGAGGACTAGTT
GTAAACGAGACGTGTAAACCTACATCATGGCCAAAAAGGAAAAACACCGT
CGGTTCTACATGGATTTTTACTTACAAGAGAAATCACTACGGAGAGGTGG
TTCGTTTCAAGGCTCGCTTAGTCGCAAAAGGG
back to top