mRNA_H-paniculata_contig284.7746.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig284.7746.1
Unique NamemRNA_H-paniculata_contig284.7746.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig284.7746.1 vs. uniprot
Match: A0A6H5LRL5_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LRL5_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 2.310e-5
Identity = 30/53 (56.60%), Postives = 38/53 (71.70%), Query Frame = -2 
Query:   62 RKERSAIGNRSDGNEAPSSRGRLINGLTTTACET*-VPPSLPPPFSMYGCSVS 217
            RKER AIG+RS GN APSSRGR++NGLT  AC+T  V P  PP  + +  ++S
Sbjct:  414 RKERLAIGDRSCGNNAPSSRGRVVNGLTAKACKTQRVRPPHPPHRTFFPTTLS 466
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BLAST of mRNA_H-paniculata_contig284.7746.1 vs. uniprot
Match: A0A6H5KJX4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJX4_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 3.370e-5
Identity = 24/34 (70.59%), Postives = 28/34 (82.35%), Query Frame = -2 
Query:  116 RKERSAIGNRSDGNEAPSSRGRLINGLTTTACET 217
            RKER A G+RS GN APSSRGR++NGLT  AC+T
Sbjct:  137 RKERLAFGDRSCGNNAPSSRGRVVNGLTAKACKT 170
[Close]
BLAST of mRNA_H-paniculata_contig284.7746.1 vs. uniprot
Match: A0A6H5KVX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVX2_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 4.190e-5
Identity = 25/34 (73.53%), Postives = 29/34 (85.29%), Query Frame = -2 
Query:  116 RKERSAIGNRSDGNEAPSSRGRLINGLTTTACET 217
            RKER AIG+RS GN APSSRGR++NGLT  AC+T
Sbjct:  465 RKERLAIGDRSCGNNAPSSRGRVVNGLTAKACKT 498
[Close]
BLAST of mRNA_H-paniculata_contig284.7746.1 vs. uniprot
Match: A0A6H5K0I7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0I7_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 4.530e-5
Identity = 25/34 (73.53%), Postives = 29/34 (85.29%), Query Frame = -2 
Query:  116 RKERSAIGNRSDGNEAPSSRGRLINGLTTTACET 217
            RKER AIG+RS GN APSSRGR++NGLT  AC+T
Sbjct:  597 RKERLAIGDRSCGNNAPSSRGRVVNGLTAEACKT 630
[Close]
BLAST of mRNA_H-paniculata_contig284.7746.1 vs. uniprot
Match: A0A6H5JD24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD24_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 4.670e-5
Identity = 25/34 (73.53%), Postives = 29/34 (85.29%), Query Frame = -2 
Query:  116 RKERSAIGNRSDGNEAPSSRGRLINGLTTTACET 217
            RKER AIG+RS GN APSSRGR++NGLT  AC+T
Sbjct:  487 RKERLAIGDRSCGNNAPSSRGRVVNGLTAKACKT 520
[Close]
BLAST of mRNA_H-paniculata_contig284.7746.1 vs. uniprot
Match: A0A6H5JE77_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE77_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 4.680e-5
Identity = 25/34 (73.53%), Postives = 29/34 (85.29%), Query Frame = -2 
Query:  116 RKERSAIGNRSDGNEAPSSRGRLINGLTTTACET 217
            RKER AIG+RS GN APSSRGR++NGLT  AC+T
Sbjct:  664 RKERLAIGDRSCGNNAPSSRGRVVNGLTAKACKT 697
[Close]
BLAST of mRNA_H-paniculata_contig284.7746.1 vs. uniprot
Match: A0A6H5L4L1_9PHAE (Reverse transcriptase domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4L1_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 4.780e-5
Identity = 25/34 (73.53%), Postives = 29/34 (85.29%), Query Frame = -2 
Query:  116 RKERSAIGNRSDGNEAPSSRGRLINGLTTTACET 217
            RKER AIG+RS GN APSSRGR++NGLT  AC+T
Sbjct:  750 RKERLAIGDRSCGNNAPSSRGRVVNGLTAKACKT 783
[Close]
BLAST of mRNA_H-paniculata_contig284.7746.1 vs. uniprot
Match: A0A6H5JPI9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPI9_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 4.780e-5
Identity = 25/34 (73.53%), Postives = 29/34 (85.29%), Query Frame = -2 
Query:  116 RKERSAIGNRSDGNEAPSSRGRLINGLTTTACET 217
            RKER AIG+RS GN APSSRGR++NGLT  AC+T
Sbjct:  753 RKERLAIGDRSCGNNAPSSRGRVVNGLTVKACKT 786
[Close]
BLAST of mRNA_H-paniculata_contig284.7746.1 vs. uniprot
Match: A0A6H5JS68_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS68_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 4.940e-5
Identity = 25/34 (73.53%), Postives = 29/34 (85.29%), Query Frame = -2 
Query:  116 RKERSAIGNRSDGNEAPSSRGRLINGLTTTACET 217
            RKER AIG+RS GN APSSRGR++NGLT  AC+T
Sbjct:  897 RKERLAIGDRSCGNNAPSSRGRVVNGLTAKACKT 930
[Close]
BLAST of mRNA_H-paniculata_contig284.7746.1 vs. uniprot
Match: A0A6H5JMW7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMW7_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 5.160e-5
Identity = 28/44 (63.64%), Postives = 34/44 (77.27%), Query Frame = -2 
Query:   92 RKERSAIGNRSDGNEAPSSRGRLINGLTTTACET*--VPPSLPP 217
            RKER AIG+R  GN APSSRGR++NGLT  AC+T   VPP++ P
Sbjct:  361 RKERLAIGDRCCGNNAPSSRGRVVNGLTAKACKTEEYVPPTIFP 404
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig284.7746.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5LRL5_9PHAE2.310e-556.60Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KJX4_9PHAE3.370e-570.59Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVX2_9PHAE4.190e-573.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0I7_9PHAE4.530e-573.53Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JD24_9PHAE4.670e-573.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JE77_9PHAE4.680e-573.53Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L4L1_9PHAE4.780e-573.53Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JPI9_9PHAE4.780e-573.53Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JS68_9PHAE4.940e-573.53Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JMW7_9PHAE5.160e-563.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig284contigH-paniculata_contig284:6162..6856 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-03_004400.2
Exons1
Model size695
Cds size441
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig284.7746.1prot_H-paniculata_contig284.7746.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig284 6242..6682 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929861.874155-UTR-H-paniculata_contig284:6161..62411622929861.874155-UTR-H-paniculata_contig284:6161..6241Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig284 6162..6241 +
1691481044.1467764-UTR-H-paniculata_contig284:6161..62411691481044.1467764-UTR-H-paniculata_contig284:6161..6241Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig284 6162..6241 +
1622929861.8981447-UTR-H-paniculata_contig284:6682..68561622929861.8981447-UTR-H-paniculata_contig284:6682..6856Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig284 6683..6856 +
1691481044.171213-UTR-H-paniculata_contig284:6682..68561691481044.171213-UTR-H-paniculata_contig284:6682..6856Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig284 6683..6856 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929861.8871439-CDS-H-paniculata_contig284:6241..66821622929861.8871439-CDS-H-paniculata_contig284:6241..6682Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig284 6242..6682 +
1691481044.158868-CDS-H-paniculata_contig284:6241..66821691481044.158868-CDS-H-paniculata_contig284:6241..6682Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig284 6242..6682 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig284.7746.1

>prot_H-paniculata_contig284.7746.1 ID=prot_H-paniculata_contig284.7746.1|Name=mRNA_H-paniculata_contig284.7746.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=147bp
MEKGGGSEGGTHVSHAVVVRPLIRRPREDGASFPSERFPMADRSFLHHPM
FQNMFHLPRLHHLQPVQPYFRKSRYSNASSSRYMGEGRGGRECSTKSPCA
KALHRMNKGAPQSKNQITTYDISCPSPWKQQNPENIAKSQETQNMK*
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mRNA from alignment at H-paniculata_contig284:6162..6856+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig284.7746.1 ID=mRNA_H-paniculata_contig284.7746.1|Name=mRNA_H-paniculata_contig284.7746.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=695bp|location=Sequence derived from alignment at H-paniculata_contig284:6162..6856+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAACAACAATTGCGGGGGGAGGGGGAGAATGGGGGATCAAAATAATCAAC
GAATTGGCATACGAGACACTGCATCCGTACATGGAGAAGGGAGGGGGGAG
TGAGGGGGGTACTCATGTTTCGCATGCTGTCGTCGTTAGGCCATTGATCA
GGCGTCCTCGGGAAGACGGAGCTTCGTTCCCATCAGAACGATTCCCGATG
GCCGATCGCTCCTTCCTACATCACCCAATGTTTCAAAATATGTTTCACCT
GCCCCGTTTACATCACCTACAACCAGTTCAGCCTTATTTTCGCAAATCCC
GTTATTCAAACGCCTCATCATCTCGGTATATGGGGGAGGGGAGGGGCGGG
AGAGAATGTTCAACCAAATCACCATGTGCGAAAGCACTCCACCGAATGAA
CAAGGGCGCCCCCCAGTCGAAGAACCAAATCACCACCTATGACATTTCTT
GTCCCTCACCTTGGAAACAACAAAACCCCGAAAACATTGCAAAAAGCCAG
GAAACACAAAATATGAAATAATCCTACTATGGAGGGCAGGAACGTTCCTG
GGGTTCAGGAACCCCGGCCCCCTGTAGAACAACTAATGGCGTTTTGTCCT
ATCGTCGGAACAACTTTTCTAGCTGCTTTCGACCATGGATGACGGCCAAT
AAATGATTTCATCAACGCACGTACTTACTCTGCACTACAGTATAT
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Coding sequence (CDS) from alignment at H-paniculata_contig284:6162..6856+

>mRNA_H-paniculata_contig284.7746.1 ID=mRNA_H-paniculata_contig284.7746.1|Name=mRNA_H-paniculata_contig284.7746.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=882bp|location=Sequence derived from alignment at H-paniculata_contig284:6162..6856+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGAAGGGAGGGGGGAGTGAGGGGGGTACTCATGTTTCGCATGCTGT
CGTCGTTAGGCCATTGATCAGGCGTCCTCGGGAAGACGGAGCTTCGTTCC
CATCAGAACGATTCCCGATGGCCGATCGCTCCTTCCTACATCACCCAATG
TTTCAAAATATGTTTCACCTGCCCCGTTTACATCACCTACAACCAGTTCA
GCCTTATTTTCGCAAATCCCGTTATTCAAACGCCTCATCATCTCGGTATA
TGGGGGAGGGGAGGGGCGGGAGAGAATGTTCAACCAAATCACCATGTGCG
AAAGCACTCCACCGAATGAACAAGGGCGCCCCCCAGTCGAAGAACCAAAT
CACCACCTATGACATTTCTTGTCCCTCACCTTGGAAACAACAAAACCCCG
AAAACATTGCAAAAAGCCAGGAAACACAAAATATGAAATAAATGGAGAAG
GGAGGGGGGAGTGAGGGGGGTACTCATGTTTCGCATGCTGTCGTCGTTAG
GCCATTGATCAGGCGTCCTCGGGAAGACGGAGCTTCGTTCCCATCAGAAC
GATTCCCGATGGCCGATCGCTCCTTCCTACATCACCCAATGTTTCAAAAT
ATGTTTCACCTGCCCCGTTTACATCACCTACAACCAGTTCAGCCTTATTT
TCGCAAATCCCGTTATTCAAACGCCTCATCATCTCGGTATATGGGGGAGG
GGAGGGGCGGGAGAGAATGTTCAACCAAATCACCATGTGCGAAAGCACTC
CACCGAATGAACAAGGGCGCCCCCCAGTCGAAGAACCAAATCACCACCTA
TGACATTTCTTGTCCCTCACCTTGGAAACAACAAAACCCCGAAAACATTG
CAAAAAGCCAGGAAACACAAAATATGAAATAA
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