mRNA_H-paniculata_contig28391.7744.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig28391.7744.1
Unique NamemRNA_H-paniculata_contig28391.7744.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28391.7744.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig28391contigH-paniculata_contig28391:2417..2878 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size453
Cds size330
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig28391.7744.1prot_H-paniculata_contig28391.7744.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig28391 2417..2757 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929861.727159-CDS-H-paniculata_contig28391:2416..26661622929861.727159-CDS-H-paniculata_contig28391:2416..2666Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28391 2417..2666 -
1691481044.080376-CDS-H-paniculata_contig28391:2416..26661691481044.080376-CDS-H-paniculata_contig28391:2416..2666Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28391 2417..2666 -
1622929861.7394197-CDS-H-paniculata_contig28391:2677..27571622929861.7394197-CDS-H-paniculata_contig28391:2677..2757Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28391 2678..2757 -
1691481044.0890276-CDS-H-paniculata_contig28391:2677..27571691481044.0890276-CDS-H-paniculata_contig28391:2677..2757Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28391 2678..2757 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929861.7537503-UTR-H-paniculata_contig28391:2757..28781622929861.7537503-UTR-H-paniculata_contig28391:2757..2878Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28391 2758..2878 -
1691481044.097357-UTR-H-paniculata_contig28391:2757..28781691481044.097357-UTR-H-paniculata_contig28391:2757..2878Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28391 2758..2878 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig28391.7744.1

>prot_H-paniculata_contig28391.7744.1 ID=prot_H-paniculata_contig28391.7744.1|Name=mRNA_H-paniculata_contig28391.7744.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=110bp
MCAVAPESEAHFSELLGASATAVVVHPCQCAGFICRRCFVIHTATVWTLV
RDLLRASADLTLPPLGFAVADLLLSALRSPAAFFAVSLFPTARAAPTEPL
LALGRLAASA
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mRNA from alignment at H-paniculata_contig28391:2417..2878-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig28391.7744.1 ID=mRNA_H-paniculata_contig28391.7744.1|Name=mRNA_H-paniculata_contig28391.7744.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=462bp|location=Sequence derived from alignment at H-paniculata_contig28391:2417..2878- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTTCACAGGGAGCTCCAGCTTTCCGAATCCCGCCACCGGCAGGAATGTC
CCGTCAGCTATGTCGCGCATGCGCCAGCCGGCACCGTCGTGTAGTTGTCG
AACGTCGTAGAGTCGGACGATATGTGCGCGGTTGCTCCCGAGTCTGAGGC
CCACTTTTCGGAACTCTTGGGGGCGTCGGCTACAGCGGTGGTGGTGCACC
CGCGGACTTCAGCTGCCAGTGCGCGGGGTTTATCTGTCGTCGTTGTTTCG
TTATCCACACCGCAACGGTGTGGACACTTGTGCGCGATTTGCTTCGTGCT
TCCGCAGACTTAACACTTCCTCCTCTTGGTTTTGCCGTCGCCGATCTTCT
GCTCTCTGCCCTTCGCTCCCCAGCAGCCTTCTTCGCGGTGTCCTTATTTC
CCACGGCCCGTGCAGCTCCCACTGAACCTCTTCTTGCCCTTGGCCGCCTG
GCGGCTTCTGCA
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Coding sequence (CDS) from alignment at H-paniculata_contig28391:2417..2878-

>mRNA_H-paniculata_contig28391.7744.1 ID=mRNA_H-paniculata_contig28391.7744.1|Name=mRNA_H-paniculata_contig28391.7744.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at H-paniculata_contig28391:2417..2878- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGCGCGGTTGCTCCCGAGTCTGAGGCCCACTTTTCGGAACTCTTGGG
GGCGTCGGCTACAGCGGTGGTGGTGCACCCATGTGCGCGGTTGCTCCCGA
GTCTGAGGCCCACTTTTCGGAACTCTTGGGGGCGTCGGCTACAGCGGTGG
TGGTGCACCCCTGCCAGTGCGCGGGGTTTATCTGTCGTCGTTGTTTCGTT
ATCCACACCGCAACGGTGTGGACACTTGTGCGCGATTTGCTTCGTGCTTC
CGCAGACTTAACACTTCCTCCTCTTGGTTTTGCCGTCGCCGATCTTCTGC
TCTCTGCCCTTCGCTCCCCAGCAGCCTTCTTCGCGGTGTCCTTATTTCCC
ACGGCCCGTGCAGCTCCCACTGAACCTCTTCTTGCCCTTGGCCGCCTGGC
GGCTTCTGCACTGCCAGTGCGCGGGGTTTATCTGTCGTCGTTGTTTCGTT
ATCCACACCGCAACGGTGTGGACACTTGTGCGCGATTTGCTTCGTGCTTC
CGCAGACTTAACACTTCCTCCTCTTGGTTTTGCCGTCGCCGATCTTCTGC
TCTCTGCCCTTCGCTCCCCAGCAGCCTTCTTCGCGGTGTCCTTATTTCCC
ACGGCCCGTGCAGCTCCCACTGAACCTCTTCTTGCCCTTGGCCGCCTGGC
GGCTTCTGCA
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