mRNA_H-paniculata_contig2838.7741.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2838.7741.1
Unique NamemRNA_H-paniculata_contig2838.7741.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig2838.7741.1 vs. uniprot
Match: B1N8E7_9PHAE (Glutathione S-transferase 2 n=1 Tax=Laminaria digitata TaxID=80365 RepID=B1N8E7_9PHAE)

HSP 1 Score: 281 bits (718), Expect = 3.900e-86
Identity = 137/208 (65.87%), Postives = 169/208 (81.25%), Query Frame = 2 
Query:  128 MAP--KMTLTYFDIDALAEPVRLCLAMTGQTWEDKRVSFDQFAVIKPTLPYGQLPILEFNGKVLPQAGAQLRFVGKFAGLYPHDPVEAAFADAAVDAVSDMHLKLLPTIAEKDMTKKLEMRKDMVNDFLPKWLANLEKSLELAGGDYFAGGRLSIGDIAVVARILWMKEGTPSLDGIPSTLINDYRLLSALVDRVCAEPKIAAYHEAK 745
            MAP   +TLTYFD    AEPVR+ LAMTGQ WEDKRVSF +F  +KP LP GQLPILE  GKVLPQ+GAQLR+VGK AGLYP D +EAA ADAAVD+V D H+KL PT+ +KD  +++EMR+++V DFLP WL NLEK+L  AGG YFAGG+LSIGDIAVVAR++W+KEG  SLDGIP++++++Y LLSAL++RV AEP IA YH+ +
Sbjct:    1 MAPTTSLTLTYFDFAGPAEPVRMALAMTGQPWEDKRVSFSEFPALKPGLPNGQLPILEVGGKVLPQSGAQLRYVGKLAGLYPEDALEAALADAAVDSVGDNHMKLAPTVQQKDKVQQMEMRQNLVRDFLPTWLGNLEKALANAGGTYFAGGKLSIGDIAVVARLVWLKEG--SLDGIPTSIVDEYPLLSALIERVNAEPNIAKYHQER 206
[Close]
BLAST of mRNA_H-paniculata_contig2838.7741.1 vs. uniprot
Match: B1N8E6_9PHAE (Glutathione S-transferase 1 n=1 Tax=Laminaria digitata TaxID=80365 RepID=B1N8E6_9PHAE)

HSP 1 Score: 259 bits (662), Expect = 4.900e-78
Identity = 125/205 (60.98%), Postives = 159/205 (77.56%), Query Frame = 2 
Query:  128 MAPKMTLTYFDIDALAEPVRLCLAMTGQTWEDKRVSFDQFAVIKPTLPYGQLPILEFNGKVLPQAGAQLRFVGKFAGLYPHDPVEAAFADAAVDAVSDMHLKLLPTIAEKDMTKKLEMRKDMVNDFLPKWLANLEKSLELAGGDYFAGGRLSIGDIAVVARILWMKEGTPSLDGIPSTLINDYRLLSALVDRVCAEPKIAAYHEA 742
            M PK+ L+YFDI AL EP+RL LAM+GQ WEDKRVS ++F  IKP+LPY QLP LE  G ++PQ+ AQ+R++GK  GLY  DP+EAAFADAA++AV DMH  L PT+ E+D  KKLEMRK M +++LP WL NLE++L+ AGG YFAGG+LSIGDI VVAR+ W+K G  +LDGIP T+++D+ LLSALV  V +E KI  Y E+
Sbjct:    1 MGPKLILSYFDIPALGEPLRLALAMSGQAWEDKRVSKEEFMAIKPSLPYNQLPTLEVGGTLIPQSLAQMRYIGKIGGLYSEDPIEAAFADAAMEAVIDMHFHLRPTVHEQDPAKKLEMRKAMTDNYLPTWLGNLERALKAAGGSYFAGGKLSIGDIYVVARLNWLKRG--ALDGIPDTIVDDFPLLSALVQSVMSEEKIVKYLES 203
[Close]
BLAST of mRNA_H-paniculata_contig2838.7741.1 vs. uniprot
Match: D8LHF0_ECTSI (Glutathione S-transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHF0_ECTSI)

HSP 1 Score: 234 bits (596), Expect = 1.960e-68
Identity = 118/206 (57.28%), Postives = 154/206 (74.76%), Query Frame = 2 
Query:  128 MAPKMTLTYFDIDALAEPVRLCLAMTGQTWEDKRVSFDQFAVIKPTLPYGQLPILEFNGKVLPQAGAQLRFVGKFAGLYPHDPVEAAFADAAVDAVSDMHLKLLPTIAEKDMTKKLEMRKDMVNDFLPKWLANLEKSLELAGGDYFAGGRLSIGDIAVVARILWMKEGTPSLDGIPSTLINDYRLLSALVDRVCAEPKIAAYHEAK 745
            MAP M LTYF+  AL EP+RL LA +G  W D RV  +Q+  +KPTLPY Q+P+LE +G V+PQ+ A LR+VGK   LYP DP++AAFAD+A DAVSD+   +   I EKD  KK ++RKD+V   LP WLANLEK+L+LAGG+YFAG +LSIGDIAVVAR+ W+ +GT   +G+PSTL+++  L+S+LV RV AEP+I AY E +
Sbjct:    1 MAP-MKLTYFEFAALGEPLRLALAQSGVEWIDNRVPSEQWPTLKPTLPYQQMPVLEVDGAVIPQSLAILRYVGKIGNLYPTDPIQAAFADSATDAVSDIQGYMRGIIFEKDADKKAQLRKDLVETLLPTWLANLEKALKLAGGEYFAGDKLSIGDIAVVARLNWLTDGT--FEGVPSTLLDESPLVSSLVQRVMAEPRIVAYMEER 203
[Close]
BLAST of mRNA_H-paniculata_contig2838.7741.1 vs. uniprot
Match: D8LK37_ECTSI (Glutathione S-transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK37_ECTSI)

HSP 1 Score: 229 bits (584), Expect = 1.090e-66
Identity = 115/206 (55.83%), Postives = 150/206 (72.82%), Query Frame = 2 
Query:  128 MAPKMTLTYFDIDALAEPVRLCLAMTGQTWEDKRVSFDQFAVIKPTLPYGQLPILEFNGKVLPQAGAQLRFVGKFAGLYPHDPVEAAFADAAVDAVSDMHLKLLPTIAEKDMTKKLEMRKDMVNDFLPKWLANLEKSLELAGGDYFAGGRLSIGDIAVVARILWMKEGTPSLDGIPSTLINDYRLLSALVDRVCAEPKIAAYHEAK 745
            MAP M LTYFDI AL E +RL LA +G  W D RV+F+++  +KPTLPY Q+P+LE +G V+PQ  A LR+VGK   LYP DP++AAFAD+A DAV+DMH  +     EKD   K ++ KD+V   LP WLANLEK+L+LAGG YFAG +LSIGDIAVVAR+ W+ +GT   + +PS ++ ++ LLS+LV RV AEP+I AY E +
Sbjct:    1 MAP-MKLTYFDIAALGEQLRLALAQSGVEWIDNRVTFEEWPTLKPTLPYQQMPVLEVDGAVIPQTFAILRYVGKMGDLYPTDPIQAAFADSATDAVNDMHGHMRAIFFEKDADAKTQLLKDLVEKLLPPWLANLEKALKLAGGKYFAGDKLSIGDIAVVARLNWLTDGTFD-ESVPSAILEEFPLLSSLVQRVMAEPRIVAYMEER 204
[Close]
BLAST of mRNA_H-paniculata_contig2838.7741.1 vs. uniprot
Match: B1N8E8_9PHAE (Glutathione S-transferase 3 n=1 Tax=Laminaria digitata TaxID=80365 RepID=B1N8E8_9PHAE)

HSP 1 Score: 194 bits (494), Expect = 7.490e-54
Identity = 96/203 (47.29%), Postives = 138/203 (67.98%), Query Frame = 2 
Query:  128 MAPKMTLTYFDIDALAEPVRLCLAMTGQTWEDKRVSFDQFAVIKPTLPYGQLPILEFNGKVLPQAGAQLRFVGKFAGLYPHDPVEAAFADAAVDAVSDMHLKLLPTIAEKDMTKKLEMRKDMVNDFLPKWLANLEKSLELAGGDYFAGGRLSIGDIAVVARILWMKEGTPSLDGIPSTLIND-YRLLSALVDRVCAEPKIAAY 733
            MAPK+ LTYFDI   AEP+R  L  +GQ WEDKR++ ++F V+KP+LP GQLP+LE +G  LPQ+   LR+VGK  GL+P D +EAA  DA +DA  D ++ + P   EKD  K+LEM  D+  +++PKWLAN+EK L    G YFA  ++S+ DI +  R+  +++G  + +G+P+T+ +  Y  L+AL D +  EPKIAA+
Sbjct:    1 MAPKLVLTYFDIPGAAEPIRWALEQSGQEWEDKRLTGEEFGVVKPSLPNGQLPVLEVDGYTLPQSMTILRYVGKLGGLHPSDDLEAAKCDAVLDAAVDFYINVRPAYTEKDQAKQLEMFGDLAVNYIPKWLANVEKQLAATEGIYFAE-KMSVADIMITTRLKTLRDG--NYNGVPTTIFDSSYPNLNALYDSIVGEPKIAAF 200
[Close]
BLAST of mRNA_H-paniculata_contig2838.7741.1 vs. uniprot
Match: A0A6H5JAZ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAZ7_9PHAE)

HSP 1 Score: 181 bits (460), Expect = 9.270e-50
Identity = 88/155 (56.77%), Postives = 118/155 (76.13%), Query Frame = 2 
Query:  281 LPILEFNGKVLPQAGAQLRFVGKFAGLYPHDPVEAAFADAAVDAVSDMHLKLLPTIAEKDMTKKLEMRKDMVNDFLPKWLANLEKSLELAGGDYFAGGRLSIGDIAVVARILWMKEGTPSLDGIPSTLINDYRLLSALVDRVCAEPKIAAYHEAK 745
            +P+LE +G V+PQ+ A LR+VGK   LYP+DP++AAFAD+AVDAVSD+H  +   I EKD   K ++RKD+V   LP WL N EK+L+LAGG YFAG +LSIGDIAVVAR+ W+ +GT   +G+PSTL+ ++ LLS+LV R+ AEP+I AY E +
Sbjct:    1 MPVLEVDGAVIPQSVAILRYVGKMGNLYPNDPIQAAFADSAVDAVSDIHGYMRGIIFEKDADAKAQLRKDLVETLLPPWLTNSEKALKLAGGKYFAGDKLSIGDIAVVARLNWLTDGT--FEGVPSTLLEEFPLLSSLVQRIMAEPRIVAYMEGR 153
[Close]
BLAST of mRNA_H-paniculata_contig2838.7741.1 vs. uniprot
Match: F2U7D3_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U7D3_SALR5)

HSP 1 Score: 165 bits (417), Expect = 2.130e-41
Identity = 83/202 (41.09%), Postives = 122/202 (60.40%), Query Frame = 2 
Query:  134 PKMTLTYFDIDALAEPVRLCLAMTGQTWEDKRVSFDQFAVIKPTLPYGQLPILEFNGKVLPQAGAQLRFVGKFAGLYPHDPVEAAFADAAVDAVSDMHLKLLPTIAEKDMTKKLEMRKDMVNDFLPKWLANLEKSLELAGGDYFAGGRLSIGDIAVVARILWMKEGTPSLDGIPSTLINDYRLLSALVDRVCAEPKIAAYHE 739
            PK  L YFDI   AEP RL   + G  + D RVS DQ+  +KP  PYGQLPIL+ +G+++ Q+ A +RFVGK   LYP D +EAA  D  +  + D++  ++PTI E+DM +KL MR+++  D LP+WLA L  + + + G      R+SI D+     I W+  G   +DGIP T+++ +  L AL  R+  +P + AY +
Sbjct:   28 PKYRLVYFDIRGRAEPARLAFHLAGVEFADVRVSRDQWCKLKPKCPYGQLPILQVDGQIIAQSSAIIRFVGKKTNLYPEDHMEAARVDEVIGLIEDINWLIIPTIKERDMERKLAMRRELATDLLPRWLAVL--NCKFSNGYVLGPDRISIADLTAFTLIGWLTMGV--MDGIPKTIVDKHANLKALQARIAKQPNLQAYFD 225
[Close]
BLAST of mRNA_H-paniculata_contig2838.7741.1 vs. uniprot
Match: A0A061SAH2_9CHLO (Prostaglandin-H2 D-isomerase n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SAH2_9CHLO)

HSP 1 Score: 156 bits (394), Expect = 5.970e-40
Identity = 85/201 (42.29%), Postives = 119/201 (59.20%), Query Frame = 2 
Query:  146 LTYFDIDALAEPVRLCLAMTGQTWEDKRVSFDQFAVIKPTLPYGQLPILEFNGKVLPQAGAQLRFVGKFAGLYPHDPVEAAFADAAVDAVSDMHLKLLPTIAEKDMTKKLEMRKDMVNDFLPKWLANLEKSLELAGGD-YFAGGRLSIGDIAVVARILWMKEGTPSLDGIPSTLINDYRLLSALVDRVCAEPKIAAYHEAK 745
            L+YFD   +AEP+RL  A+ G  +ED R   + +  +KP  PYG +P L    +V  Q+ A LR+ GK AGLYP DPVEA   D  VDA+ DM L + PT+ E+D  KK+EMRK +  + LPKWL    K +E  G   Y  G  L+I D+ +   I  +  G   LDGIP T+   +  ++AL+++V A+ K+ A+ EAK
Sbjct:    5 LSYFDFKGVAEPIRLAFAVGGIDFEDHRFQREDWPQLKPKTPYGSVPTLTIGDRVYAQSNAILRYAGKLAGLYPTDPVEALAVDQIVDALEDMFLHVKPTVQEQDEKKKMEMRKVLAEETLPKWLGYFNKHIEENGSSGYIVGDSLTIADLKLYTLIGLLTSGM--LDGIPKTIAEPFPKVTALLEKVGADEKVKAF-EAK 202
[Close]
BLAST of mRNA_H-paniculata_contig2838.7741.1 vs. uniprot
Match: A0A4U0GJK4_9GAMM (Glutathione S-transferase n=1 Tax=Sinimarinibacterium sp. CAU 1509 TaxID=2562283 RepID=A0A4U0GJK4_9GAMM)

HSP 1 Score: 144 bits (363), Expect = 1.060e-35
Identity = 82/211 (38.86%), Postives = 126/211 (59.72%), Query Frame = 2 
Query:  134 PKMTLTYFDIDA-LAEPVRLCLAMTGQTWEDKRVSFDQFAVIKPTLPYGQLPILEFNGKVLPQAGAQLRFVGKFAGLYPHDPVEAAFADAAVDAVSDMHLKLLPTIAEKDMTKKLEMRKDMVNDFLPKWLANLEKSLELAGGDYFAGGRLSIGDIAVVARILWMKEGTPSLDGIPSTLINDYRLLSALV---DRVCAEPKIAAYHEAKLTA 754
            P +TLTYFD D    EP RL L + G  +ED+RV F ++  ++  +P+  LP+LE +G+++ Q+ +  R+VGK AGLYP D ++A   D  +DAV DM  ++  TI   D   K + R+ +    LP +L   +  LE AGG+YFA  RL++GD+ V   + W++ G   LD IP  L++  R+   LV   +R+ A+P+IAAY+  +  A
Sbjct:    2 PALTLTYFDFDGGRGEPARLALHIGGVPFEDRRVLFKEWQAMRDGMPFRALPVLEVDGRLVAQSNSINRYVGKLAGLYPQDNLQALLCDEVMDAVEDMDFQIGSTIG-LDAEAKKKAREALTAGPLPHYLEQFQARLEAAGGEYFADRRLTVGDLKVWMLVRWLRSGM--LDDIPKDLVD--RVAPRLVTHAERLAAQPQIAAYYAGRKKA 207
[Close]
BLAST of mRNA_H-paniculata_contig2838.7741.1 vs. uniprot
Match: UPI001E460E4C (glutathione S-transferase family protein n=2 Tax=Oxalobacteraceae TaxID=75682 RepID=UPI001E460E4C)

HSP 1 Score: 144 bits (362), Expect = 1.450e-35
Identity = 84/205 (40.98%), Postives = 119/205 (58.05%), Query Frame = 2 
Query:  128 MAPKMTLTYFDIDA-LAEPVRLCLAMTGQTWEDKRVSFDQFAVIKPTLPYGQLPILEFNGKVLPQAGAQLRFVGKFAGLYPHDPVEAAFADAAVDAVSDMHLKLLPTIAEKDMTKKLEMRKDMVNDFLPKWLANLEKSLELAGGDYFAGGRLSIGDIAVVARILWMKEGTPSLDGIPSTLINDYR-LLSALVDRVCAEPKIAAYH 736
            M PK+ LTYFD+     EPVRL L + G  +ED R ++ QFA I+ T+P+GQ+P+LE +G  + Q  A LR+ GK AGLYP D  +A   D     + +  +KL PT       +K   R+ +VN  +P +L  LE+ L+ AGG+YF GG LSI D+ V   +  +  G   LD IP+ L+     LL+  + R+ A P IAAY+
Sbjct:    1 MMPKLKLTYFDMHGGRGEPVRLALTLGGIAFEDHRFAYPQFAEIRKTVPFGQVPVLEVDGVQITQTDAILRYAGKLAGLYPQDAYQALLCDEIAYVIEENLIKLGPTFRMTGEEQKAA-REALVNGSIPVYLRWLEQKLQAAGGEYFVGGALSIADLRVFVDVRTLNSGR--LDHIPTDLVEKTAPLLNQHMARIAALPAIAAYY 202
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2838.7741.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B1N8E7_9PHAE3.900e-8665.87Glutathione S-transferase 2 n=1 Tax=Laminaria digi... [more]
B1N8E6_9PHAE4.900e-7860.98Glutathione S-transferase 1 n=1 Tax=Laminaria digi... [more]
D8LHF0_ECTSI1.960e-6857.28Glutathione S-transferase n=1 Tax=Ectocarpus silic... [more]
D8LK37_ECTSI1.090e-6655.83Glutathione S-transferase n=1 Tax=Ectocarpus silic... [more]
B1N8E8_9PHAE7.490e-5447.29Glutathione S-transferase 3 n=1 Tax=Laminaria digi... [more]
A0A6H5JAZ7_9PHAE9.270e-5056.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
F2U7D3_SALR52.130e-4141.09Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]
A0A061SAH2_9CHLO5.970e-4042.29Prostaglandin-H2 D-isomerase n=1 Tax=Tetraselmis s... [more]
A0A4U0GJK4_9GAMM1.060e-3538.86Glutathione S-transferase n=1 Tax=Sinimarinibacter... [more]
UPI001E460E4C1.450e-3540.98glutathione S-transferase family protein n=2 Tax=O... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2838contigH-paniculata_contig2838:8540..14151 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score165.6
Seed ortholog evalue2.5e-38
Seed eggNOG ortholog946362.XP_004994854.1
KEGG rclassRC00004,RC00069,RC00672,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944
KEGG koko:K04097
KEGG ReactionR02266,R03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409
KEGG Pathwayko00480,ko00590,ko00980,ko00982,ko01100,ko05204,map00480,map00590,map00980,map00982,map01100,map05204
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Glutathione S-transferase, C-terminal domain
EggNOG OGs3A52M@33154,KOG1695@1,KOG1695@2759
EC2.5.1.18,5.3.99.2
COG Functional cat.O
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons6
Model size2362
Cds size639
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2838.7741.1prot_H-paniculata_contig2838.7741.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2838 8667..12555 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929861.4500294-UTR-H-paniculata_contig2838:8539..86661622929861.4500294-UTR-H-paniculata_contig2838:8539..8666Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2838 8540..8666 +
1691481043.9589388-UTR-H-paniculata_contig2838:8539..86661691481043.9589388-UTR-H-paniculata_contig2838:8539..8666Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2838 8540..8666 +
1622929861.5976524-UTR-H-paniculata_contig2838:12555..141511622929861.5976524-UTR-H-paniculata_contig2838:12555..14151Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2838 12556..14151 +
1691481044.0370834-UTR-H-paniculata_contig2838:12555..141511691481044.0370834-UTR-H-paniculata_contig2838:12555..14151Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2838 12556..14151 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929861.4723494-CDS-H-paniculata_contig2838:8666..88021622929861.4723494-CDS-H-paniculata_contig2838:8666..8802Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2838 8667..8802 +
1691481043.970125-CDS-H-paniculata_contig2838:8666..88021691481043.970125-CDS-H-paniculata_contig2838:8666..8802Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2838 8667..8802 +
1622929861.4890661-CDS-H-paniculata_contig2838:10076..101691622929861.4890661-CDS-H-paniculata_contig2838:10076..10169Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2838 10077..10169 +
1691481043.9786594-CDS-H-paniculata_contig2838:10076..101691691481043.9786594-CDS-H-paniculata_contig2838:10076..10169Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2838 10077..10169 +
1622929861.5107613-CDS-H-paniculata_contig2838:10771..108871622929861.5107613-CDS-H-paniculata_contig2838:10771..10887Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2838 10772..10887 +
1691481043.987725-CDS-H-paniculata_contig2838:10771..108871691481043.987725-CDS-H-paniculata_contig2838:10771..10887Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2838 10772..10887 +
1622929861.5317461-CDS-H-paniculata_contig2838:11246..112871622929861.5317461-CDS-H-paniculata_contig2838:11246..11287Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2838 11247..11287 +
1691481044.0060182-CDS-H-paniculata_contig2838:11246..112871691481044.0060182-CDS-H-paniculata_contig2838:11246..11287Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2838 11247..11287 +
1622929861.5563498-CDS-H-paniculata_contig2838:11655..117191622929861.5563498-CDS-H-paniculata_contig2838:11655..11719Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2838 11656..11719 +
1691481044.0179474-CDS-H-paniculata_contig2838:11655..117191691481044.0179474-CDS-H-paniculata_contig2838:11655..11719Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2838 11656..11719 +
1622929861.5730317-CDS-H-paniculata_contig2838:12366..125551622929861.5730317-CDS-H-paniculata_contig2838:12366..12555Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2838 12367..12555 +
1691481044.0275087-CDS-H-paniculata_contig2838:12366..125551691481044.0275087-CDS-H-paniculata_contig2838:12366..12555Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2838 12367..12555 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2838.7741.1

>prot_H-paniculata_contig2838.7741.1 ID=prot_H-paniculata_contig2838.7741.1|Name=mRNA_H-paniculata_contig2838.7741.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=213bp
MAPKMTLTYFDIDALAEPVRLCLAMTGQTWEDKRVSFDQFAVIKPTLPYG
QLPILEFNGKVLPQAGAQLRFVGKFAGLYPHDPVEAAFADAAVDAVSDMH
LKLLPTIAEKDMTKKLEMRKDMVNDFLPKWLANLEKSLELAGGDYFAGGR
LSIGDIAVVARILWMKEGTPSLDGIPSTLINDYRLLSALVDRVCAEPKIA
AYHEAKLTAKKD*
back to top

mRNA from alignment at H-paniculata_contig2838:8540..14151+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2838.7741.1 ID=mRNA_H-paniculata_contig2838.7741.1|Name=mRNA_H-paniculata_contig2838.7741.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5612bp|location=Sequence derived from alignment at H-paniculata_contig2838:8540..14151+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCGCCTAGATCCTCCACCACACGCGTTCACCCCCACACAACACTCGTCT
TGTACTGCTGTGTGCTATCCCCCACCATCACCCAGAACATCTGACACTAC
ACCATTGGGCAACACCACAAAAACACCATGGCTCCCAAGATGACTCTGAC
CTACTTCGACATAGATGCCCTTGCCGAGCCCGTACGTCTCTGCCTCGCCA
TGACCGGTCAAACTTGGGAAGACAAGAGGGTCAGCTTTGACCAGTTTGCT
GTCATCAAGCCAAGTGAGTGAGGCCTATGTGCTAAAGTATGGCTTTGTAG
TCAGAATCAATGACCAGTAGTGGGTGAGTGTTGTGGTGTGAAGTACAGTA
ACAGCACTTGGTGGTAAGAGACAGGAGTGTACTAACCTATCTAGACAGTG
TTCAGTACCACAGCATTGCTGCAGGCATCACAGGAATATAAGCTGGTTTT
TGTTTAAAAAGCGGGCCAGTTAGTGCCGGTTCGACTAACAAAACAAGGTT
CTTATACTTTTCTGGAGGTAGCACAGAGAGGTGGCGCTGGGAGGTAACAC
GGGGGGATTGGACCGGGAAGTAGCAGCGGGGGTTAGCGGGGGGTTGTTTC
TTCCGCTTCTATGCAATTATCTGGGTGCTTGTCCTGGATCAATCGAGTGT
GGCCGACCCACTTCAATCACTCTCTCACAACAGCCACCATGACCTCCGTC
TGTGGTTCGGTCTTCTTTCTTTGTCAAGTTGGAATTAATAAATGACATGC
AGTAGTTCAGTATGTTCGATCTCAAGTGGTGCACACTGCATCCCAGCTTC
TCAGTCCCTGCGTTTGGCTGCCTCATGGAGCCACTTACTGGTGCCCTACA
AAAGATACACCGATAGGTTATGGGCTTCGATAGTTTATGAGCACCGAAAC
TCTGATAGGGCACTTACAACAAGACCTCATCGCTACCGATTTGGGTATTC
GCGGATGCGATTCCCCATATATTATTCCGCTCACGAAACTTGCTGTAGGT
GGAGATATATGTCGCATCAGGCAGTTGCACCATATACTCTCAGATCTTGG
ATTGTTTCGAGCTTCAGAGCATTTGAGTTCGGCCAAATTCCCATCCCCGC
AAAACTGGGATCGTGTGCCAGGATCGCGTAGGCCCTATTGCAAATACCCT
GTATATCACTATTCCATGCATCGCGTTTCCCCCGTTCGCTGAATACAATG
ATTTTGTCTGTATTTGGGGTGCTACTCCTATGCTTGACTTGCAATATGAA
CTCTGTATCTTTGCCTGGGTGCAGACTACAGTATTTCACGTTTGATGCCC
ATCAGTAGCGTACAAGATGTATCGAGATATATCAGTCTTTTTTCAAAGGA
TGTTGTTGATCACGTTGAGTGTTTTTGGTCGCGCAGTAAGGATCAAGTCG
CCGAATCCACGTGCACTAAAACGGCGACACAATGTACGTGCAGTGTGACT
AGGAACTCCCGCAATTTCCTCGTGACATTTTTCATCAGTTCACCCCTTTC
GTTTTTCTCACGTCGATTGTCGTTGCTGTGGTCTCAGCTCTTCCCTATGG
TCAGCTGCCTATCCTTGAGTTCAATGGGAAAGTGCTTCCCCAGGCCGGGG
CCCAGCTGCGTTTCGTCGGCAAATTTGCCGGTAAGCCCGGTGCATTGAGA
AAGCAACAGGATTGGAGGTTGTACGCACTCTCAAGGCGTAGGGGTCTTGG
CATAAATGCGTGAAGTTACAGACACGAACGTCACTCGACAGATTGCGCGT
ATCGCCTTTCGCGGAAGGAGTCGCATGTTGGTCGACCAAAAAAAACTCGG
CAAAATATGCGCATGGAGGTTTTACGATATATAGTACAAAAATAGTGTCT
AGTCGCGTTGTCATTCTCCGCAGAAGTGTTTTTCCCCTCAGCAAATTTCA
CAGCCCTGTCGATAGACCGCGTTTCATGTGGTGGCAAATGTGAAGCAATC
ATGGATGCATATTTGATCCCACGCTTAGCTTACTGCCGTCCTCGTTTTGC
TGACGGATTGGGTTGGTCTCCTTATTTCCGGAATATTCATATAGTCTTAT
ACGCCCTCTTTGAATCAACAGCTCTACTGGAGTCACAACATGTTCCTAAA
ACAGACACAAATGGTCAGCATTACAGGGGCTGTGTATCATACCGTCCTCT
GGTAGTTTCGTTTATCGTCTCTTTCTCTCTTTCTTTCTCTCTCTCACTTT
ATTCATTTGATGCTCCGATCTCTCCTTTGCAGGGCTCTACCCCCACGACC
CCGTCGAAGCGGCCTTCGCCGATGCTGCGGTCGACGCGGTGTCCGACATG
CACCTTAAACTCCTTCCCACCATTGCGGAGAAGGACATGACCAAGAAGGT
ACGTTCTCGTAGCAATATGCAATTTTACTGTTGTGAACCAAATTTGATTA
CCTCCTAAGAATGGGTAATGTATAGCGTACACACATTTACTCGCCACCTG
TTTTTGATAGGTTTGCTGAAGGAAGTGTAATGCAACATGGATAGAGTGGA
CCTGTTTTATGAGCTTCAGAGCTATAACCTTCCCCCGCCTCTTCACCTGT
CCGCATCGCTTTTATACGTTCCAAATGAGTAACTTGTATTTCAGTATTGT
GCGTACGTACTGTGCTATTTTCTCTTGTGCTGACCCCAAAATCGTCGTTT
CACTGTTTCGTGCCGTCTACCTCGTCGTCTGTTGATTGCTCCTACGGTGA
ACCTCAGCTTGAAATGCGCAAGGATATGGTGAACGACTTCCTTCCAAAGT
GAGTGAAGGAAATGTTTTCATGCACTCTGAGTTATTGAGCATCATTTTAC
CGCACTGAGGAGAGTGCCAATTTGCAGATAGTACAAAGGAAGAAGATTCC
GATGATCTCTGGCTGATATGCCGGTGTCAGTGGAGACAACGAACCGCAGC
TGCTAGCGCAGTGCCGTTGCATTCACGGATGCGACCGTCTGCAGACCGCT
TCCAGCACTTTGGTAGGGTTGACTATCTCTCTAGGGTAAAAGAGGCCGTG
TTGGGAGCATCAACTTACCTGAATTGGGCACGTTCTTGCGCGCAGCTACC
ATGCGTGCGTCTTCAACGTACTCTCTTTCCTGCGTGTTTTTTTGTGTTTC
CACATGATGCGTGCAGGTGGCTGGCGAATCTGGAGAAGAGCCTGGAGTTA
GCCGGTGGCGACTACTTCGCCGGAGGCAGGGTGAGTGAACAATATTTTAC
ATAGTACCGGTCTCGTGAATTTGTGCAACTTTTTCCGGAGTTGATTTTAT
ATTACGTGGAGCTTCTCATCGGGGTGATACGGTTTCTGAAGGTAGAGAGT
GGGATATCACGATCTGAAGTATGCGAGCTCAGCCGCACATCCCTACTCTT
CATCCTGGAACGACGCGCGTATCAGAGGTAATCATTGGTTTGACAGTTAT
ATTCATGATTTGTGCGCGTTATATGACAAATATTGCGCTTGAATATACTT
GCGATATTCTCGTGTCGTTTTCAGTCTCTGTTGTATAATTTGTCTTGTAC
TGCATCACGTAGTGCGTCCTCTCTGCCTCCCCACCTCCCACCTCCCACAC
ACAGTATACCAGCCAATGTTTGCTTGCTTGTAGCCCCCCGTTAGCTCAAA
TTAATATCTAGTTTCTCTAGTCCGCCGTCGGAAGAAAAGCTCATTAGCCT
GATATCCTGGATAACTGTAAACCCCTACTCTTCGAAACCGTCTTCCATCT
ATTTAGTGTTTTAATATCCATTTATCGGTGGAAACGTCGTATCCGTTCAT
GGTATATTGTGGTCGTGTTCTATTCGCTCTCTCTTGATCCTGTTCCCCCA
CCCCTTTCTGTTCGGTTGTGTATACAGCTCTCCATCGGTGACATTGCTGT
TGTGGCGAGGATACTCTGGATGAAGGAGGGGACGCCCTCCCTGGATGGAA
TCCCGAGCACTCTCATCAACGACTACCGATTGCTGTCCGCTCTGGTTGAT
CGCGTTTGTGCTGAGCCGAAAATCGCTGCCTACCATGAGGCGAAGCTTAC
TGCTAAGAAGGACTGATGTGACGTTAATGTTTTTCGATATTCAATGTCAT
AACTTTCGCGATGACTTTCCTCCTATGGTCGACGACACGATTACAAGGCA
TACCTATGCGGTGTCGTCACAGTGAGATCGGGGAGGAGGGGCGGGGACAG
GGGTCTACGCTCGGCGGCCGTGGAGAGGCCGTAAGATATTTCATCCGCAT
AGACTCTCCCAGGAGGAGCTGCCACAGTATGGATGAAGTCGATATGCTGT
GCATGGCGATTTTTACGTACGATTTTGCGACGACATGACCCTTGTGTATT
CTTCACTGCCCGTGCCTAAATATGGTTTTGATATTTTTGTTTCGATTGTC
TCGTTCGACTTTCGTCTTTAGTATCACCAATATTGCCAACCACATCGGAA
CGTTTTCGTTTTCAATACGGGGGGCCGTGCAACCAGTCTACTAAAACACG
TTCGGAATTGTTCTTGTGATGGACCAATAAAATTGGGTGTATGGTGTGTG
TTTAGGGACTGTCTGTCCGCGCTCGGAGGCGCGACACAAGCACCGTGTTT
CATCGTTACAACAAAGTAGAAGTATGTGGGTGGAGGGAATTTGACCTCGA
GGTAACGCACAAATGTCGTGAGTGCTCATACACCACGCGCGAAGCGGGGC
TGACTGGAGATTTTTCTTTCTGTGGAGTTGTGTAAAGTTGTGTTTTGTGA
AGGTGGGTATGGTGGATGTGGTGTGCTGGCTATTGTTGTAGGCAGAGGCA
TACGTCCGAGGTGCCTGTTGTTGGATTACACGTTCCTAGTGGTGTTCGTG
CATTAGTCTGCAGCTGTTGAACTGATTTCAGCGATATCGTTGTGGGTGAA
ATGTGCAAAGATTCAGCGAGACATCTTGCAAATAGAGAGAGCAGGCACAC
ATAAGTAAAGAAACTACAGCTTGATATATTGTTCAAGAGCGTGTGTATGG
CTGTCAGTGATTACAGCTTGTCAAATGTTTGCTTACAGCTAACGTACTGT
AGACCGTACTGTCGTTACTGGTAGTGTACTCCGGAGTATGATGTATTGGT
TGGCGTTTGCGCCGTTCCCCACCTGTGGTTGTTAAGCGGCGATGACGTGT
CGTAGGAATATGACTAAAATCTGGATTGGCGCATGGCTGGACACCTTGCC
TTCTCACGAGCCGCCTAAACTCGGGGTGGGGAGTGGGGCTGTTTCTGGTT
GCAAGTGTGTGTGCATTGTCTACTTATCTAAATCACTAACGTAATATACG
GAATCTATCAGACCCCTTCGCGTCAATATTCCGCCGTTCTCGATTTCTTG
GAGCCGGACTCGGGGCATGTCGCCGCGGACTACGATCGACTGCCACCCCT
ATCTCGGAACTGAGAAAATGGCGAACGAATTGCATGTTGTGCGGAACCTG
AGTTGAACGATTAGAGAGGTTTTCGTGGGACACTTGCGTTGACCCGACGC
GTTAACTCAAGCTCGTCCCTGCCAAGCAATCAGATCGTATGAAAACTGTG
CCTGGGGGTATCGCTTGCCTGCTTACATGGACCTACATCATTGTACATGA
AAAAACTGTCGCAATGGCATGTGCCAAACTCATCAGACTGTTTACTGCTT
TGTGCCTAGAAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig2838:8540..14151+

>mRNA_H-paniculata_contig2838.7741.1 ID=mRNA_H-paniculata_contig2838.7741.1|Name=mRNA_H-paniculata_contig2838.7741.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1278bp|location=Sequence derived from alignment at H-paniculata_contig2838:8540..14151+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTCCCAAGATGACTCTGACCTACTTCGACATAGATGCCCTTGCCGA
GCCCGTACGTCTCTGCCTCGCCATGACCGGTCAAACTTGGGAAGACAAGA
GGGTCAGCTTTGACCAGTTTGCTGTCATCAAGCCAAATGGCTCCCAAGAT
GACTCTGACCTACTTCGACATAGATGCCCTTGCCGAGCCCGTACGTCTCT
GCCTCGCCATGACCGGTCAAACTTGGGAAGACAAGAGGGTCAGCTTTGAC
CAGTTTGCTGTCATCAAGCCAACTCTTCCCTATGGTCAGCTGCCTATCCT
TGAGTTCAATGGGAAAGTGCTTCCCCAGGCCGGGGCCCAGCTGCGTTTCG
TCGGCAAATTTGCCGCTCTTCCCTATGGTCAGCTGCCTATCCTTGAGTTC
AATGGGAAAGTGCTTCCCCAGGCCGGGGCCCAGCTGCGTTTCGTCGGCAA
ATTTGCCGGGCTCTACCCCCACGACCCCGTCGAAGCGGCCTTCGCCGATG
CTGCGGTCGACGCGGTGTCCGACATGCACCTTAAACTCCTTCCCACCATT
GCGGAGAAGGACATGACCAAGAAGGGCTCTACCCCCACGACCCCGTCGAA
GCGGCCTTCGCCGATGCTGCGGTCGACGCGGTGTCCGACATGCACCTTAA
ACTCCTTCCCACCATTGCGGAGAAGGACATGACCAAGAAGCTTGAAATGC
GCAAGGATATGGTGAACGACTTCCTTCCAAACTTGAAATGCGCAAGGATA
TGGTGAACGACTTCCTTCCAAAGTGGCTGGCGAATCTGGAGAAGAGCCTG
GAGTTAGCCGGTGGCGACTACTTCGCCGGAGGCAGGGTGGCTGGCGAATC
TGGAGAAGAGCCTGGAGTTAGCCGGTGGCGACTACTTCGCCGGAGGCAGG
CTCTCCATCGGTGACATTGCTGTTGTGGCGAGGATACTCTGGATGAAGGA
GGGGACGCCCTCCCTGGATGGAATCCCGAGCACTCTCATCAACGACTACC
GATTGCTGTCCGCTCTGGTTGATCGCGTTTGTGCTGAGCCGAAAATCGCT
GCCTACCATGAGGCGAAGCTTACTGCTAAGAAGGACTGACTCTCCATCGG
TGACATTGCTGTTGTGGCGAGGATACTCTGGATGAAGGAGGGGACGCCCT
CCCTGGATGGAATCCCGAGCACTCTCATCAACGACTACCGATTGCTGTCC
GCTCTGGTTGATCGCGTTTGTGCTGAGCCGAAAATCGCTGCCTACCATGA
GGCGAAGCTTACTGCTAAGAAGGACTGA
back to top