mRNA_H-paniculata_contig28365.7739.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig28365.7739.1
Unique NamemRNA_H-paniculata_contig28365.7739.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig28365.7739.1 vs. uniprot
Match: D8LU35_ECTSI (Fe2OG dioxygenase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU35_ECTSI)

HSP 1 Score: 163 bits (413), Expect = 2.960e-43
Identity = 73/103 (70.87%), Postives = 82/103 (79.61%), Query Frame = 3 
Query:    6 LDMPHNSAVVMWGGCQERYKHGVPPMRKGVGVHPVAGTKRISITLRERKETLPQYLLPIPTCLCGIGAILKARVLPSGAVEYIYVCDRGQGQCGFFAQKALAR 314
            LDMPHN A+VMWGGCQERYKHGVP M KGVG HP++GTKRISITLRERKE+LP  LLP+P C C + A LKARV  +G V Y+Y CDRGQGQCGF+  K   R
Sbjct:  339 LDMPHNCAIVMWGGCQERYKHGVPVMSKGVGTHPMSGTKRISITLRERKESLPSCLLPVPDCRCRVPASLKARVKRNGQVGYLYQCDRGQGQCGFWLSKGPLR 441
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BLAST of mRNA_H-paniculata_contig28365.7739.1 vs. uniprot
Match: A0A6H5KU93_9PHAE (2OG-FeII_Oxy_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU93_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 4.240e-43
Identity = 71/99 (71.72%), Postives = 80/99 (80.81%), Query Frame = 3 
Query:    6 LDMPHNSAVVMWGGCQERYKHGVPPMRKGVGVHPVAGTKRISITLRERKETLPQYLLPIPTCLCGIGAILKARVLPSGAVEYIYVCDRGQGQCGFFAQK 302
            LDMPHN A+VMW GCQERYKH VP M KGVG HP++GTKRISITLRERKE+LP  LLP+P C C + A LKARV  +G VEY+Y CDRGQGQCGF+  K
Sbjct:  232 LDMPHNCAIVMWAGCQERYKHSVPVMSKGVGTHPMSGTKRISITLRERKESLPACLLPVPDCRCRVPASLKARVKRNGQVEYLYQCDRGQGQCGFWLSK 330
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BLAST of mRNA_H-paniculata_contig28365.7739.1 vs. uniprot
Match: Q751T4_ASHGO (AFR741Wp n=1 Tax=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) TaxID=284811 RepID=Q751T4_ASHGO)

HSP 1 Score: 65.1 bits (157), Expect = 4.090e-8
Identity = 35/94 (37.23%), Postives = 53/94 (56.38%), Query Frame = 3 
Query:    6 LDMPHNSAVVMWGGCQERYKHGVPPM--RKGVG---VHPVAGTKRISITLRERKETLPQYLLPIPTCLCGIGAILKARVLPSGAVEYIYVCDRG 272
            + + HNS ++M  GCQE +KH VPP+  RK V    +HP++G+ R+S+T R  K   P+  L  P C   +  + +    PS    YI++C RG
Sbjct:  265 IPLAHNSVLIMHAGCQEEFKHCVPPLGKRKKVSAAELHPISGSVRVSLTFRHYKVDFPRDAL-CPECGYPMD-LRRTYKTPSKRGHYIWICSRG 356
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BLAST of mRNA_H-paniculata_contig28365.7739.1 vs. uniprot
Match: R9XE54_ASHAC (AaceriAFR741Wp n=1 Tax=Ashbya aceri TaxID=566037 RepID=R9XE54_ASHAC)

HSP 1 Score: 60.1 bits (144), Expect = 1.810e-6
Identity = 33/94 (35.11%), Postives = 49/94 (52.13%), Query Frame = 3 
Query:    6 LDMPHNSAVVMWGGCQERYKHGVPPMRKGVGV-----HPVAGTKRISITLRERKETLPQYLLPIPTCLCGIGAILKARV-LPSGAVEYIYVCDR 269
            + + HNS ++M  GCQE +KH +PP+ K   V     HPV+G+ R+S+T R  K  L +  +      CG    L+     PS    YI++C R
Sbjct:  266 IPLAHNSVLIMHAGCQEEFKHCIPPISKRSKVSTTDLHPVSGSVRVSLTFRHYKVDLARDAMCTE---CGYPMDLRRTYKTPSKRGRYIWICSR 356
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BLAST of mRNA_H-paniculata_contig28365.7739.1 vs. uniprot
Match: R1BFI0_EMIHU (Fe2OG dioxygenase domain-containing protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BFI0_EMIHU)

HSP 1 Score: 56.6 bits (135), Expect = 2.220e-5
Identity = 31/74 (41.89%), Postives = 39/74 (52.70%), Query Frame = 3 
Query:    6 LDMPHNSAVVMWGGCQERYKHGVPPMRKGVGV-HPVAGTKRISITLRERKETLPQYLLPIPTCLCGIGAILKAR 224
            + MPHNS VVMWG CQER+ H VP   +G  + H + G  R S+T R  +       +  P C C   A LK R
Sbjct:  237 IPMPHNSIVVMWGECQERWDHAVPACGEGAVLRHALVGPVRYSLTFRMSRAAE----ISRPKCRCDKPAELKWR 306
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BLAST of mRNA_H-paniculata_contig28365.7739.1 vs. uniprot
Match: E3JVU7_PUCGT (Uncharacterized protein n=4 Tax=Puccinia graminis f. sp. tritici TaxID=56615 RepID=E3JVU7_PUCGT)

HSP 1 Score: 56.2 bits (134), Expect = 4.070e-5
Identity = 38/103 (36.89%), Postives = 49/103 (47.57%), Query Frame = 3 
Query:    6 LDMPHNSAVVMWGGCQERYKHGVPPMRK-GVGVHPVAGT----KRISITLR-ERKETLPQYLLPI-------------------------PTCLCGIGAILKA 221
            + +PHNS +VM GGCQERYKH +PP     V  +P+  T    +RI+IT R  R +  P   +PI                         P C CGI AIL+A
Sbjct:  414 MSLPHNSLLVMHGGCQERYKHCIPPQPSLDVFKNPLQPTDTRIERINITFRFYRPDFRPSRSIPIRNASSSSLSSGPNPNQQDSTEVCVTPRCRCGIPAILRA 516
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BLAST of mRNA_H-paniculata_contig28365.7739.1 vs. uniprot
Match: A0A180GSV5_PUCT1 (Fe2OG dioxygenase domain-containing protein n=2 Tax=Puccinia triticina (isolate 1-1 / race 1 (BBBD)) TaxID=630390 RepID=A0A180GSV5_PUCT1)

HSP 1 Score: 55.8 bits (133), Expect = 5.320e-5
Identity = 38/99 (38.38%), Postives = 48/99 (48.48%), Query Frame = 3 
Query:    6 LDMPHNSAVVMWGGCQERYKHGVPPMRK-GVGVHPVAGT----KRISITLR-ERKETLPQYLLPIPT---------------------CLCGIGAILKA 221
            + +PHNS +VM GGCQERYKH +PP     V  +P   T    +RI+IT R  R +  P   +PIP                      C CGI AIL+A
Sbjct:  385 ISLPHNSLLVMHGGCQERYKHCIPPQPSLDVFKNPNQLTDTRIERINITFRFYRPDFRPSRSIPIPNPSSSDPSVIPQESTEVRVTPRCRCGIPAILRA 483
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BLAST of mRNA_H-paniculata_contig28365.7739.1 vs. uniprot
Match: F2QZ28_KOMPC (Fe2OG dioxygenase domain-containing protein n=3 Tax=Komagataella TaxID=460517 RepID=F2QZ28_KOMPC)

HSP 1 Score: 55.1 bits (131), Expect = 8.100e-5
Identity = 24/63 (38.10%), Postives = 40/63 (63.49%), Query Frame = 3 
Query:    6 LDMPHNSAVVMWGGCQERYKHGVPPMRKGV-GVHPVAGTKRISITLRERKETLPQYLLPIPTC 191
            + +PHN+ ++M+GGCQE YKH V P+   +  +HP++G  RI++T R       +++  IP C
Sbjct:  276 IPVPHNTLLIMYGGCQEEYKHCVAPLPSIIDSLHPISGETRINLTYRHYDS---EWVSRIPRC 335
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28365.7739.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LU35_ECTSI2.960e-4370.87Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A6H5KU93_9PHAE4.240e-4371.722OG-FeII_Oxy_2 domain-containing protein n=1 Tax=E... [more]
Q751T4_ASHGO4.090e-837.23AFR741Wp n=1 Tax=Ashbya gossypii (strain ATCC 1089... [more]
R9XE54_ASHAC1.810e-635.11AaceriAFR741Wp n=1 Tax=Ashbya aceri TaxID=566037 R... [more]
R1BFI0_EMIHU2.220e-541.89Fe2OG dioxygenase domain-containing protein n=2 Ta... [more]
E3JVU7_PUCGT4.070e-536.89Uncharacterized protein n=4 Tax=Puccinia graminis ... [more]
A0A180GSV5_PUCT15.320e-538.38Fe2OG dioxygenase domain-containing protein n=2 Ta... [more]
F2QZ28_KOMPC8.100e-538.10Fe2OG dioxygenase domain-containing protein n=3 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig28365contigH-paniculata_contig28365:1402..3120 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score160.2
Seed ortholog evalue5.1e-37
Seed eggNOG ortholog2880.D8LU35
Hectar predicted targeting categoryother localisation
EggNOG free text desc.2OG-Fe(II) oxygenase superfamily
EggNOG OGs2C0F4@1,2QUQ4@2759
Ec32 ortholog descriptionAlpha-ketoglutarate-dependent dioxygenase AlkB-like
Ec32 orthologEc-16_000070.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size968
Cds size312
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig28365.7739.1prot_H-paniculata_contig28365.7739.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig28365 1413..2475 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929861.1873815-UTR-H-paniculata_contig28365:1401..14121622929861.1873815-UTR-H-paniculata_contig28365:1401..1412Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28365 1402..1412 +
1691481043.8627677-UTR-H-paniculata_contig28365:1401..14121691481043.8627677-UTR-H-paniculata_contig28365:1401..1412Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28365 1402..1412 +
1622929861.2508786-UTR-H-paniculata_contig28365:2475..31201622929861.2508786-UTR-H-paniculata_contig28365:2475..3120Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28365 2476..3120 +
1691481043.906954-UTR-H-paniculata_contig28365:2475..31201691481043.906954-UTR-H-paniculata_contig28365:2475..3120Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28365 2476..3120 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929861.2033465-CDS-H-paniculata_contig28365:1412..15151622929861.2033465-CDS-H-paniculata_contig28365:1412..1515Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28365 1413..1515 +
1691481043.8762863-CDS-H-paniculata_contig28365:1412..15151691481043.8762863-CDS-H-paniculata_contig28365:1412..1515Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28365 1413..1515 +
1622929861.2277374-CDS-H-paniculata_contig28365:2266..24751622929861.2277374-CDS-H-paniculata_contig28365:2266..2475Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28365 2267..2475 +
1691481043.8934884-CDS-H-paniculata_contig28365:2266..24751691481043.8934884-CDS-H-paniculata_contig28365:2266..2475Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28365 2267..2475 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig28365.7739.1

>prot_H-paniculata_contig28365.7739.1 ID=prot_H-paniculata_contig28365.7739.1|Name=mRNA_H-paniculata_contig28365.7739.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=104bp
MPHNSAVVMWGGCQERYKHGVPPMRKGVGVHPVAGTKRISITLRERKETL
PQYLLPIPTCLCGIGAILKARVLPSGAVEYIYVCDRGQGQCGFFAQKALA
RKL*
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mRNA from alignment at H-paniculata_contig28365:1402..3120+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig28365.7739.1 ID=mRNA_H-paniculata_contig28365.7739.1|Name=mRNA_H-paniculata_contig28365.7739.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1719bp|location=Sequence derived from alignment at H-paniculata_contig28365:1402..3120+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCTGCTGGACATGCCGCATAACTCCGCCGTGGTGATGTGGGGTGGCTGT
CAAGAGCGATACAAGCATGGAGTGCCTCCAATGAGAAAGGGAGTGGGGGT
TCACCCCGTCGCTGGTGAGAAGATGAGAAGGTGTACCATACTGCCCAACG
ACGATGATGGAAGCGAGCAGAGATTCAAATTCACGCGGATATTTGTTAAG
TACATGTCAGCCATAGCTACACCTGTGCGGTTACTGACCGTAAAAGGCGC
TGCTCTTGGATAGAGTTCTGTATCGGCGCCAACGCAACAGCTTCCTTGCG
GTACACCGGGCTACTTCATATGCGCCCGGAGAAAGTAAATGTTCACAATC
AACTCCGCCAATTGCCAGCCCAGGCCGTCAGGACTTCCGATAACATACTG
CATGCGTTTGAAGGTTACTAGCTGACATGATGAAAACATGACAGTATCAA
CCGAGTCACGGTCTGGCTCTTGAGTGCAGCATCGCAAGCATACTCCACAG
CATTGTGTGTGACCTCCAGGTCATTCAAATCTGTTATCGTACGCGTCGGA
AAGGGGACTAAAAAATAGGAAACACCAGAACACATTTTGCACTCGAGCCT
TTACACGGTGGAGCATGACGTAGTAGGTGTGAAATCTGGAAAAATCATTC
GCCGCCTTCAATGTTATTTTTGCTTTTCGCACAACTTTGTGCAACCGAAA
CGACGACCCGTTTAGAGAGACTTGAGATGAGGTGCATACGAAGTCAGCAC
GTGAGCAGTCGGTATCGGCGTACAGGTGAGGATGCCAGCTCTCTCACGCT
GCTGGTCATACCTTAACGCGTGAACACATTTTTTTCTCGCCCTCCACAAT
GACTTTTGTGCACAGGAACCAAGCGCATCAGTATAACGCTTCGTGAGCGC
AAGGAAACGTTACCCCAGTACCTACTCCCCATCCCCACGTGCCTTTGCGG
GATAGGCGCTATTCTCAAGGCTCGGGTGCTACCCAGCGGAGCTGTGGAGT
ATATTTACGTGTGCGATAGAGGTCAGGGGCAGTGCGGCTTTTTTGCCCAG
AAGGCGCTAGCGAGGAAACTTTAGAGTAGAACTAGAGCAGGCTGCGAATT
AGTGGTTGGAGACAGTCATAATATACTTCTAGTAAATGACAGCATTCACG
GGCTGTTATGTTTTTTTTTATCGAGCCATTGGCTGCCGAGATATGGAGAA
AATAGGAAACATGTATATAGCCAGTCACGGTTTTTCGCGTTGTCTCAAGA
TTTGTAGGTGCGTTCGACAGCTAAGGAGGAGCATAATTTCCCGCCCCTCG
GTGTCTTGCGTTTAGCATGTCAACAAAAGTTATATATCTAAATGCTTCAT
CCTCAATTAGAAAATCGATCGTCATTTTCGAGGATCGGTTGTTAATGGTG
TATTGTCTCGCTTGAGGTACAAGCGAAGTTTGTTGCGTTTTTGTTGAAAG
TATGCCGTATTCCACTTATCGCCGGTTGATAGTTGGGGTCATACTGTGGG
GCACTCTCTAAAGTGTGATGGGAGGAAAAACCCAGCTTACCTGTTCGTCT
GCAATATTCAGATTATCGGCACATCCACAAGCATGATCATGTCGTTTGTT
CGTGTTGCCTTAGTGTGTTGTGGTTATCCTCGATGCACCATTGTTGTCTA
CACGTTTGCCGGCATCAAGCAGGCCACAACAGTTTGCATCGTATTATATG
ATTGTAAGACTTTGTTGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig28365:1402..3120+

>mRNA_H-paniculata_contig28365.7739.1 ID=mRNA_H-paniculata_contig28365.7739.1|Name=mRNA_H-paniculata_contig28365.7739.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at H-paniculata_contig28365:1402..3120+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCGCATAACTCCGCCGTGGTGATGTGGGGTGGCTGTCAAGAGCGATA
CAAGCATGGAGTGCCTCCAATGAGAAAGGGAGTGGGGGTTCACCCCGTCG
CTGATGCCGCATAACTCCGCCGTGGTGATGTGGGGTGGCTGTCAAGAGCG
ATACAAGCATGGAGTGCCTCCAATGAGAAAGGGAGTGGGGGTTCACCCCG
TCGCTGGAACCAAGCGCATCAGTATAACGCTTCGTGAGCGCAAGGAAACG
TTACCCCAGTACCTACTCCCCATCCCCACGTGCCTTTGCGGGATAGGCGC
TATTCTCAAGGCTCGGGTGCTACCCAGCGGAGCTGTGGAGTATATTTACG
TGTGCGATAGAGGTCAGGGGCAGTGCGGCTTTTTTGCCCAGAAGGCGCTA
GCGAGGAAACTTTAGGAACCAAGCGCATCAGTATAACGCTTCGTGAGCGC
AAGGAAACGTTACCCCAGTACCTACTCCCCATCCCCACGTGCCTTTGCGG
GATAGGCGCTATTCTCAAGGCTCGGGTGCTACCCAGCGGAGCTGTGGAGT
ATATTTACGTGTGCGATAGAGGTCAGGGGCAGTGCGGCTTTTTTGCCCAG
AAGGCGCTAGCGAGGAAACTTTAG
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