mRNA_H-paniculata_contig2834.7736.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2834.7736.1
Unique NamemRNA_H-paniculata_contig2834.7736.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2834.7736.1 vs. uniprot
Match: A0A6H5JHG5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHG5_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 1.420e-24
Identity = 76/145 (52.41%), Postives = 89/145 (61.38%), Query Frame = 1 
Query:  148 RERGFPAT-FCGTPSIYDNKLTAVMGLLAYKDPANSPLGHLVSSLQNQAIADKVNDAILAADASPRRGLEFPSSAL-----TATHI---------------------PPPSSGLELALRHLLATRQASREAAGDSGQGDMRQHLY 501
            R  GFP+T F G PS+YD+KL AVMGLLAY DPA SPLG+LVS LQNQAIADKVNDA+LAADA  RR     +S+      TA+ I                       P+SGLE A+RHLLATRQASRE  G+  Q  +   L+
Sbjct:  946 RRGGFPSTLFGGAPSVYDSKLLAVMGLLAYSDPAASPLGYLVSGLQNQAIADKVNDAVLAADALTRRSNPDRNSSTNQRSRTASSIGGASSNETGNGSGGTAQAAAAAVPTSGLEFAVRHLLATRQASRETLGNGVQAAIHPPLF 1090
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BLAST of mRNA_H-paniculata_contig2834.7736.1 vs. uniprot
Match: D8LQC3_ECTSI (CTLH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQC3_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 2.380e-21
Identity = 69/126 (54.76%), Postives = 79/126 (62.70%), Query Frame = 1 
Query:  148 RERGFPAT-FCGTPSIYDNKLTAVMGLLAYKDPANSPLGHLVSSLQNQAIADKVNDAILAADASPRRGLEFPSSAL-----TATHI---------------------PPPSSGLELALRHLLATRQ 444
            R  GFP+T F G PS+YD+KL AVMGLLAY DPA SPLG+LVS LQNQAIADKVNDA+LAADA  RR     +S+      TA+ I                       P+SGLE A+RHLLATRQ
Sbjct:  308 RRGGFPSTLFGGAPSVYDSKLLAVMGLLAYSDPAASPLGYLVSGLQNQAIADKVNDAVLAADALTRRSNPDRNSSTNQRSRTASSIGGASSNETGNGSGGTAQAAAAAVPTSGLEFAVRHLLATRQ 433
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2834.7736.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JHG5_9PHAE1.420e-2452.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQC3_ECTSI2.380e-2154.76CTLH domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2834contigH-paniculata_contig2834:11194..15707 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1323
Cds size396
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2834.7736.1prot_H-paniculata_contig2834.7736.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2834 11305..14891 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929860.498938-UTR-H-paniculata_contig2834:11193..113041622929860.498938-UTR-H-paniculata_contig2834:11193..11304Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2834 11194..11304 +
1691481043.4870162-UTR-H-paniculata_contig2834:11193..113041691481043.4870162-UTR-H-paniculata_contig2834:11193..11304Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2834 11194..11304 +
1622929860.6015172-UTR-H-paniculata_contig2834:14891..157071622929860.6015172-UTR-H-paniculata_contig2834:14891..15707Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2834 14892..15707 +
1691481043.537846-UTR-H-paniculata_contig2834:14891..157071691481043.537846-UTR-H-paniculata_contig2834:14891..15707Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2834 14892..15707 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929860.5239751-CDS-H-paniculata_contig2834:11304..114061622929860.5239751-CDS-H-paniculata_contig2834:11304..11406Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2834 11305..11406 +
1691481043.497236-CDS-H-paniculata_contig2834:11304..114061691481043.497236-CDS-H-paniculata_contig2834:11304..11406Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2834 11305..11406 +
1622929860.543455-CDS-H-paniculata_contig2834:12440..125491622929860.543455-CDS-H-paniculata_contig2834:12440..12549Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2834 12441..12549 +
1691481043.507111-CDS-H-paniculata_contig2834:12440..125491691481043.507111-CDS-H-paniculata_contig2834:12440..12549Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2834 12441..12549 +
1622929860.565185-CDS-H-paniculata_contig2834:13133..132551622929860.565185-CDS-H-paniculata_contig2834:13133..13255Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2834 13134..13255 +
1691481043.5168602-CDS-H-paniculata_contig2834:13133..132551691481043.5168602-CDS-H-paniculata_contig2834:13133..13255Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2834 13134..13255 +
1622929860.5844455-CDS-H-paniculata_contig2834:14828..148911622929860.5844455-CDS-H-paniculata_contig2834:14828..14891Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2834 14829..14891 +
1691481043.5273561-CDS-H-paniculata_contig2834:14828..148911691481043.5273561-CDS-H-paniculata_contig2834:14828..14891Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2834 14829..14891 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2834.7736.1

>prot_H-paniculata_contig2834.7736.1 ID=prot_H-paniculata_contig2834.7736.1|Name=mRNA_H-paniculata_contig2834.7736.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=132bp
MSMGPGSTDSVKRERGFPATFCGTPSIYDNKLTAVMGLLAYKDPANSPLG
HLVSSLQNQAIADKVNDAILAADASPRRGLEFPSSALTATHIPPPSSGLE
LALRHLLATRQASREAAGDSGQGDMRQHLYS*
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mRNA from alignment at H-paniculata_contig2834:11194..15707+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2834.7736.1 ID=mRNA_H-paniculata_contig2834.7736.1|Name=mRNA_H-paniculata_contig2834.7736.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4514bp|location=Sequence derived from alignment at H-paniculata_contig2834:11194..15707+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGACCCGAAAGCGCCGAACACGGAGCTATGAAGACCGAAGGATATCTGG
CGAGGACGGAGATACGGCGCCTTGGAGGGACGGGGCGGGCAGCGGCAGCG
GTGGCAGGGCGATGTCGATGGGGCCCGGGTCGACAGATTCCGTGAAACGT
GAGAGGGGATTCCCTGCCACCTTTTGCGGCACCCCTTCGATTTACGACAA
CAAATTGACGGCGGTAAGTGCGGGAGGGGAAGAGGAGATGGAACATGTGT
CTGTATCTCAAACCTGTAATATTTTCAGTGCACGGGTATACATCTTGAGG
CTTGCGTGTACTCGATAACCATGACTGGATATAATCATCAGCGAACTATG
CACAACTAGGGGCGCGTGGGTGCGCGGGAGGGTGGTATGTGTCTCATGAG
GTGTGGGTAAACTACTATGATGACCTTTGGAACGGCGAGGATGCCGGTCC
CCTGTACTGTGTACGCGCGGGGTCAAATACTGATATGATGTGATCTGATT
GCGTATCATACGCTGAGAATAAGCAGCCTTTACAGTCGCAGTCATTTGTA
CATGTATATAATAATCGTGAGCAAATTTCACAGAGTGTTTCACATAGTAT
AAAGGGTGACTGACTGTAAGGATTGTTTGGGTAATGCTGCACTGTTGCGC
TGTTCTGCTGTTTAAGTTGTCATTTTGGTTGGTTTGTTCGCTGATTTGTT
GATTGGTTGATCGAATCTTGGTGAACCGTGAAGAACGATGTGCGTGGGAT
GTGTGGGAATTAGTTGACATTATTTTCATTGGTGGTGGTGATGGCGGCGG
CGGTAGCGTTGGCGGCGGCGGCATGGTGGTCGTGTAATCGTCAATCTTGT
ACCTTGGTGGTTTGTCCCCCATGGTATCCGCCATGATTTTCTTTTGTGCG
AGTTCGTATGCACAGCGTTTTGACTGAGATATGTATAGGCCGTTAAACAC
GAAGTACATGAACAAGCAGTTGAGTATGACCATGACTATTGTGCACCCGT
TCAGTAATACTCCAGTGTTTTGTCCTCGACCCACGCATGAAAGCTCGCCC
CGGTCGAACAAGATCCATTTTTGGAAAATACTAAAGTACAGACTCGGAAA
AATATTCTGAATCAACGATCCCAGCTTTACCGTATCAAGTGTTAGGATTC
AAAGTAGCAGGAATATTGGTGCATGACGATATACAGTGCAGTTACGATCG
AATTGCAAACACACCCGCCGCTGCCTGTGTTACCTGTGATTTTGTAGGTG
ATGGGTCTCCTCGCATACAAGGATCCCGCCAACAGTCCCCTTGGGCACCT
CGTGTCTAGTCTTCAAAACCAAGCCATCGCGGACAAGGTCAACGACGCGA
TCTTAGGTAAGCATCTCTGAAAAAATTGAGATTTGTTTCGTGTGTCTATG
TCCGCGGGCTTACGCTCCTCCCTCTCTTCGGCTCGATGGTCAAACGATGC
ATTCGTACCCATAGGCAAGAACAGCTGGTCTACCGTAGTTGGTACCTGCT
GAGCCGTTTTAGTACATCAGTTTTTTTGGGGCGGTGTTTTGCTTGCGTTT
ACTACTGAGGTACCTAGCGTATATACAAAGTGATGTATGCGGCTTTCAAA
ACCTCCCCTACTTGACTTTCGTTTTTGTGATGTCTTGGTACAGGGGCGTG
TTTCAGGGGGAGGCGGGCAAGACCTGCCCTCCGTATGAATCTAAGCTCCA
CAACCTTATCATGACTTTCAACTCGAACACAAAATGGTGTAGTGTACGTC
GATTCTTGTGGGACGATGGCGTTTGTATGCTGGGCTATTATTCCCCCTGC
TTCCGCGCACCACACGCTTTTTTTTTCTTTCTTTTTTTTCTTGTATTCAC
GACGGCACGGCACACATCCCATGAATCGTTTTTTGTTTGCGTGGTTAAAT
GAATCAATAAGATGCTTCGTTTCTGTTTTTTTACCCGCAGCGGCGGATGC
ATCGCCCCGCCGAGGATTGGAATTCCCATCTTCGGCCCTAACAGCGACAC
ACATACCGCCGCCGTCCTCCGGGCTCGAGCTGGCCTTGAGGCATTTACTT
GCGACTCGGCAGGTGCGTATTGTGTTGTGTGTGCTTCTAGTAGATGGCGG
GCACGTTCCTGGGGTTCCTAGGGTTGTAATGTCCCGGCTCCTATTGTTTG
GTATATTGGCTTGCCTGCTTTCGCGCTTCCTTAGTATTTAGTCCTTAGTT
CTTCGTTATCTATTTTTAGGTGGCTCGTCGAGAATATCGAAGTTACGATT
GGTGGGGGATGCGGTGCGTGATGTTTTTCTGACGAAACTGTACACCGCAC
TGTTTTCCTCGCTTGAGACTACGTACAGTATACAATATACATGTGTCAAT
GTATATCCCGAATATATGCGGTGTCCCATTGCTTGTATAGGTTGTGCGTG
GGCCCGTCTTGTGGACTGTATCTGATCGTGTTTCGACACGACCCAGCGAT
GTCACATTTCATTAATATATATATATATATATATATATACTATTTTTCAC
GTGTACTGTTTCAAAAACTTCAATATCGATATTCCAATCATGATGACTTA
CTCATTGTCCGCTTCGCCTGTTCTTAGTTTTTTTCTTGTCTTTGCTGAAG
TTTTGACTGCGTTTTGTCGATTCCTTCTGCTCAACCGAGCCCCCTTGATT
TGATCTCTGAGGTCACCTCCAATTTATCTGAAGGACTATTATCACGTTTT
TTTACTCCAAGATATTCGAGCATTGTTAGGAAAAAAGATGATGACCGTGG
TCCTATGCTGTAGATGCCGTCTCTCCTATCCTCCCGTTGAAGTTCTCCTC
GGAGGAGTGGAGCACGTGTTGATGTCCTTGGTACGTGGAAGCTCATGTGT
AGAGTTCTCGCTCCTGCATAAGGTACACTACCCCTAGTTCTCTTTTAACT
GCTGTGTGTAGCTATCAAGTATGTCGGATTCAAATCACTCGAGCATTTGC
ACACTACACGACCTCCCCCCCCATTTGCCATGATCTAATTTTGCTGATAA
ATGCACACAACTGAAGCCTGAGATCAGCAGCATGGGTACGACGGAGTGTT
ATTATACGAATGTTATAGTTGTACTAAGTGTGGCACGTGAGTTGACTTAA
GGAGGTTTGCGGTTGTTGAGTGAGGAAACTTATTTTAGTCATGAGTTCAC
ACGAAAGCCATTTATGTTCACGTGCGGTACACACAGATAAAGTGATAACT
CCCTCGTAAAGGTCGTAGGCCATGTCGTGCCTGGTCGAAGAGGCGAGAGA
GGCCCTAGAACCCTACCACCCCTCCCCCTCCCCCCCGCGCGCACGCGTGC
GTCCGGCCTTAACTCCGGCGTATTACTAGTACGGTATGTAGGAGAAACCT
TTTTGGCCAGAAAGCGCGAGGTTGTTGTATATAGGATGGAGAAAAAAATT
TAAAGGCAATCTTTTAACAGAAATAACAAGGAGCGAGTGGCCATAATCCA
GTGGTAATCGCTATATCGGGGAATGATGCAAAGTCCTCTCGAGGATGCGT
GGTCAACGGCTTTGTGGCTGAGCCATGCTCGAATATAAGTACCGCCCCGT
CTTATCTCCATATTTCTGTCGAAATTGATGCCCGTTATGTTTGCTCTGTT
GGTGGTTCGCGTTGATCCATTCCCCTACGCGCCAGGCATCTCGTGAGGCC
GCTGGTGACAGCGGGCAAGGTGACATGCGGCAGCATCTATACTCCTAAGT
CCTTGCAGCTAATATTTATACATACTCATGAACATTTCTTTTTTTTCCTT
TGAGGTCTACAAGGTGTAGGCTTTAGGCGGTGGGCGGTTGTAAATACGAC
TTGGGAATGTTATGTTTGGGGGTGGGGGCTGTGTCTGACCACTTGCTACT
CTTGGGGTAGAGAAACGCTTAGATACGGTCGATCCCCTGTTTAGGTGCTC
TCGCGGGCTAGAGTGGGGAGGGCAGGCAATTCGTGCCTCGACCCGTACCA
CATTAGCCAAGCAACAATATAGTGGACGCGGATCAATTGTTGTAACCTGA
TTTGGTGGTACTATACGTTCGGGTTACGTGGAGATGGGAAATTAATGCTG
GTGATTAGTGGGGAGGGAAGTTATTATATTCTGTCTGTGCACCACTGCAG
TGTACTTTGATGCTCGAGATGCGCTTGCCCTACTGTTCTTGTCTATACGG
AATGTGGAAGAATGTTTGGGCATCGCTCGTGAAACGAGGCCGACAGATTA
CGATGTGTTTGTGTGTGCAAAGCAACATTTTGTGTACACTGTGTGCCGCT
CTAAAGAATGATGGCATATCCTGGGTGGGGGTCGTCTCTGTGCTGATGAT
GGCTGTGGTCGTACATGTTGGATCTATCCATGGTTATATTTGGTCAAAAT
GCGGGATGGTCCTCAGCGGGTGACGAGGTATGGTGTGTACGCCAAATATG
AAGGGATAGCAGATCGAGATTGTTTTTTTACATACGCTGTTACTTGTTCA
GCAAAACATACCAGCTACTATCAGCAGCAGCAACGGTACAGACGAAAGGA
ATTTGTCACTGCGG
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Coding sequence (CDS) from alignment at H-paniculata_contig2834:11194..15707+

>mRNA_H-paniculata_contig2834.7736.1 ID=mRNA_H-paniculata_contig2834.7736.1|Name=mRNA_H-paniculata_contig2834.7736.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=792bp|location=Sequence derived from alignment at H-paniculata_contig2834:11194..15707+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGATGGGGCCCGGGTCGACAGATTCCGTGAAACGTGAGAGGGGATT
CCCTGCCACCTTTTGCGGCACCCCTTCGATTTACGACAACAAATTGACGG
CGATGTCGATGGGGCCCGGGTCGACAGATTCCGTGAAACGTGAGAGGGGA
TTCCCTGCCACCTTTTGCGGCACCCCTTCGATTTACGACAACAAATTGAC
GGCGGTGATGGGTCTCCTCGCATACAAGGATCCCGCCAACAGTCCCCTTG
GGCACCTCGTGTCTAGTCTTCAAAACCAAGCCATCGCGGACAAGGTCAAC
GACGCGATCTTAGGTGATGGGTCTCCTCGCATACAAGGATCCCGCCAACA
GTCCCCTTGGGCACCTCGTGTCTAGTCTTCAAAACCAAGCCATCGCGGAC
AAGGTCAACGACGCGATCTTAGCGGCGGATGCATCGCCCCGCCGAGGATT
GGAATTCCCATCTTCGGCCCTAACAGCGACACACATACCGCCGCCGTCCT
CCGGGCTCGAGCTGGCCTTGAGGCATTTACTTGCGACTCGGCAGCGGCGG
ATGCATCGCCCCGCCGAGGATTGGAATTCCCATCTTCGGCCCTAACAGCG
ACACACATACCGCCGCCGTCCTCCGGGCTCGAGCTGGCCTTGAGGCATTT
ACTTGCGACTCGGCAGGCATCTCGTGAGGCCGCTGGTGACAGCGGGCAAG
GTGACATGCGGCAGCATCTATACTCCTAAGCATCTCGTGAGGCCGCTGGT
GACAGCGGGCAAGGTGACATGCGGCAGCATCTATACTCCTAA
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