prot_H-paniculata_contig28310.7732.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig28310.7732.1
Unique Nameprot_H-paniculata_contig28310.7732.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length40
Homology
BLAST of mRNA_H-paniculata_contig28310.7732.1 vs. uniprot
Match: A0A6H5KNC7_9PHAE (Centrosomal protein of 162 kDa (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNC7_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 1.240e-8
Identity = 30/39 (76.92%), Postives = 35/39 (89.74%), Query Frame = 0
Query:    2 PFVVRALQDLEAQLAELAEALRRRNPDCIASLIRAARPT 40
            P  +R ++DLEAQLAELAEALRRR+PD +ASLIRAARPT
Sbjct:  111 PADIRKIKDLEAQLAELAEALRRRHPDSLASLIRAARPT 149          
BLAST of mRNA_H-paniculata_contig28310.7732.1 vs. uniprot
Match: D8LRE4_ECTSI (Centrosomal protein of 162 kDa n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRE4_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 3.180e-8
Identity = 30/39 (76.92%), Postives = 34/39 (87.18%), Query Frame = 0
Query:    2 PFVVRALQDLEAQLAELAEALRRRNPDCIASLIRAARPT 40
            P   R ++DLEAQLAELAEALRRR+PD +ASLIRAARPT
Sbjct:   33 PADTRKIKDLEAQLAELAEALRRRHPDSLASLIRAARPT 71          
BLAST of mRNA_H-paniculata_contig28310.7732.1 vs. uniprot
Match: A0A835YRL9_9STRA (Centrosomal protein of 162 kDa n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRL9_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 1.210e-5
Identity = 23/31 (74.19%), Postives = 28/31 (90.32%), Query Frame = 0
Query:   10 DLEAQLAELAEALRRRNPDCIASLIRAARPT 40
            +LE QL E+ EA+RRRNPDC+ASLIRAA+PT
Sbjct: 1046 ELEGQLREMEEAVRRRNPDCLASLIRAAKPT 1076          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28310.7732.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KNC7_9PHAE1.240e-876.92Centrosomal protein of 162 kDa (Fragment) n=1 Tax=... [more]
D8LRE4_ECTSI3.180e-876.92Centrosomal protein of 162 kDa n=1 Tax=Ectocarpus ... [more]
A0A835YRL9_9STRA1.210e-574.19Centrosomal protein of 162 kDa n=1 Tax=Tribonema m... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 4..25

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig28310contigH-paniculata_contig28310:2347..2466 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig28310.7732.1mRNA_H-paniculata_contig28310.7732.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig28310 2347..2466 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig28310.7732.1 ID=prot_H-paniculata_contig28310.7732.1|Name=mRNA_H-paniculata_contig28310.7732.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=40bp
LPFVVRALQDLEAQLAELAEALRRRNPDCIASLIRAARPT
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