mRNA_H-paniculata_contig28310.7732.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig28310.7732.1
Unique NamemRNA_H-paniculata_contig28310.7732.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig28310.7732.1 vs. uniprot
Match: A0A6H5KNC7_9PHAE (Centrosomal protein of 162 kDa (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNC7_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 1.240e-8
Identity = 30/39 (76.92%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:    4 PFVVRALQDLEAQLAELAEALRRRNPDCIASLIRAARPT 120
            P  +R ++DLEAQLAELAEALRRR+PD +ASLIRAARPT
Sbjct:  111 PADIRKIKDLEAQLAELAEALRRRHPDSLASLIRAARPT 149
[Close]
BLAST of mRNA_H-paniculata_contig28310.7732.1 vs. uniprot
Match: D8LRE4_ECTSI (Centrosomal protein of 162 kDa n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRE4_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 3.180e-8
Identity = 30/39 (76.92%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    4 PFVVRALQDLEAQLAELAEALRRRNPDCIASLIRAARPT 120
            P   R ++DLEAQLAELAEALRRR+PD +ASLIRAARPT
Sbjct:   33 PADTRKIKDLEAQLAELAEALRRRHPDSLASLIRAARPT 71
[Close]
BLAST of mRNA_H-paniculata_contig28310.7732.1 vs. uniprot
Match: A0A835YRL9_9STRA (Centrosomal protein of 162 kDa n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRL9_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 1.210e-5
Identity = 23/31 (74.19%), Postives = 28/31 (90.32%), Query Frame = 1 
Query:   28 DLEAQLAELAEALRRRNPDCIASLIRAARPT 120
            +LE QL E+ EA+RRRNPDC+ASLIRAA+PT
Sbjct: 1046 ELEGQLREMEEAVRRRNPDCLASLIRAAKPT 1076
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28310.7732.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KNC7_9PHAE1.240e-876.92Centrosomal protein of 162 kDa (Fragment) n=1 Tax=... [more]
D8LRE4_ECTSI3.180e-876.92Centrosomal protein of 162 kDa n=1 Tax=Ectocarpus ... [more]
A0A835YRL9_9STRA1.210e-574.19Centrosomal protein of 162 kDa n=1 Tax=Tribonema m... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig28310contigH-paniculata_contig28310:2347..2466 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size120
Cds size120
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929859.6067753-CDS-H-paniculata_contig28310:2346..24661622929859.6067753-CDS-H-paniculata_contig28310:2346..2466Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28310 2347..2466 -
1691481043.057553-CDS-H-paniculata_contig28310:2346..24661691481043.057553-CDS-H-paniculata_contig28310:2346..2466Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28310 2347..2466 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig28310.7732.1prot_H-paniculata_contig28310.7732.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig28310 2347..2466 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig28310.7732.1

>prot_H-paniculata_contig28310.7732.1 ID=prot_H-paniculata_contig28310.7732.1|Name=mRNA_H-paniculata_contig28310.7732.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=40bp
LPFVVRALQDLEAQLAELAEALRRRNPDCIASLIRAARPT
back to top

mRNA from alignment at H-paniculata_contig28310:2347..2466-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig28310.7732.1 ID=mRNA_H-paniculata_contig28310.7732.1|Name=mRNA_H-paniculata_contig28310.7732.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=120bp|location=Sequence derived from alignment at H-paniculata_contig28310:2347..2466- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGCCTTTCGTGGTGCGTGCCCTCCAGGACCTAGAAGCCCAGCTGGCGGA
GCTTGCTGAAGCCCTCAGAAGGCGGAACCCCGATTGCATCGCCAGCCTCA
TCCGCGCCGCTCGGCCGACG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig28310:2347..2466-

>mRNA_H-paniculata_contig28310.7732.1 ID=mRNA_H-paniculata_contig28310.7732.1|Name=mRNA_H-paniculata_contig28310.7732.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=240bp|location=Sequence derived from alignment at H-paniculata_contig28310:2347..2466- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGCCTTTCGTGGTGCGTGCCCTCCAGGACCTAGAAGCCCAGCTGGCGGA
GCTTGCTGAAGCCCTCAGAAGGCGGAACCCCGATTGCATCGCCAGCCTCA
TCCGCGCCGCTCGGCCGACGTTGCCTTTCGTGGTGCGTGCCCTCCAGGAC
CTAGAAGCCCAGCTGGCGGAGCTTGCTGAAGCCCTCAGAAGGCGGAACCC
CGATTGCATCGCCAGCCTCATCCGCGCCGCTCGGCCGACG
back to top