mRNA_H-paniculata_contig2831.7731.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2831.7731.1
Unique NamemRNA_H-paniculata_contig2831.7731.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig2831.7731.1 vs. uniprot
Match: A0A6H5K3L9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3L9_9PHAE)

HSP 1 Score: 279 bits (713), Expect = 4.190e-86
Identity = 131/174 (75.29%), Postives = 153/174 (87.93%), Query Frame = 3 
Query:   69 MAVRRLNQTGALTLQAPRMTPEGLEVSLHTCPKALARELNYVFPGVELGACLAVPTTQKAKMDLVGMGEKVETEKDRLLNSFVTFASVLCEEIREAGYWADYIDPCSGLPMITNGNKVYSEVDGMQLLLQYRVMNAGSCKVLLHPQWGSSVYPASLFCNAPADVVKKLLEGRLV 590
            M+ R+  Q G +TLQ PRM P+GLEVSLHTCP+AL REL++VFPGV+L ACLA+PT QKA MDLV MG+ VETEKD LLNSF +FAS LC++IREAGYWADYIDPCSGLPM++ G KVYSEV+GMQLLLQY+VMNAG+CKVLLHPQWGS+VYPASLFC AP+D V++LLE RLV
Sbjct:    1 MSRRQRTQRGCITLQPPRMMPDGLEVSLHTCPRALLRELDHVFPGVDLDACLAIPTNQKAGMDLVAMGDTVETEKDVLLNSFASFASGLCKQIREAGYWADYIDPCSGLPMLSGGTKVYSEVEGMQLLLQYQVMNAGNCKVLLHPQWGSAVYPASLFCTAPSDFVQRLLEERLV 174
[Close]
BLAST of mRNA_H-paniculata_contig2831.7731.1 vs. uniprot
Match: A0A835Z3S3_9STRA (Methylmalonic aciduria and homocystinuria type D protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3S3_9STRA)

HSP 1 Score: 216 bits (551), Expect = 9.510e-63
Identity = 102/151 (67.55%), Postives = 122/151 (80.79%), Query Frame = 3 
Query:  138 LEVSLHTCPKALARELNYVF--PGVELGACLAVPTTQKAKMDLVGMGEKVETEKDRLLNSFVTFASVLCEEIREAGYWADYIDPCSGLPMITNGNKVYSEVDGMQLLLQYRVMNAGSCKVLLHPQWGSSVYPASLFCNAPADVVKKLLEGR 584
            ++VS+HTCP+AL REL +VF   GV+L  CLAVPT QKA  DLV MG  V+ EKDRLLN FV FA+ LC  +RE G+WADYIDPCSGLPM++ GNKVYSEV+GMQLLLQY+VMNAG C+VLLHP WGS VYPAS F  AP + V+++LEG+
Sbjct:    1 MQVSVHTCPRALQRELTHVFRGTGVDLTGCLAVPTNQKAGTDLVNMGSDVDIEKDRLLNVFVDFAAWLCSTLREQGFWADYIDPCSGLPMLSGGNKVYSEVEGMQLLLQYQVMNAGMCRVLLHPTWGSHVYPASCFTTAPIEAVERVLEGK 151
[Close]
BLAST of mRNA_H-paniculata_contig2831.7731.1 vs. uniprot
Match: A0A7S3XWY3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XWY3_HETAK)

HSP 1 Score: 197 bits (501), Expect = 3.430e-55
Identity = 96/159 (60.38%), Postives = 119/159 (74.84%), Query Frame = 3 
Query:  108 LQAPRMTPEGLEVSLHTCPKALARELNYVFPGVEL-GACLAVPTTQKAKMDLVGMGEKVETEKDRLLNSFVTFASVLCEEIREAGYWADYIDPCSGLPMIT-NGNKVYSEVDGMQLLLQYRVMNAGSCKVLLHPQWGSSVYPASLFCNAPADVVKKLLE 578
            LQ PRMT +GLEVS+H  PKAL REL ++F        CLA+PT QK++ DLV MGE VE EKDR LN F  +A  +CE +   G+WAD+IDPCSGLPM++ N N VYSEV+GMQLLL+Y V+NAG C+VLLHP WGS+VYPA+LF  AP + V ++LE
Sbjct:   19 LQPPRMTKDGLEVSVHIAPKALIRELKFIFRDKSFESGCLAIPTCQKSQEDLVNMGEDVEFEKDRCLNVFSDWARHVCERLATQGHWADFIDPCSGLPMLSPNNNSVYSEVEGMQLLLRYSVLNAGMCRVLLHPVWGSAVYPATLFTTAPHEAVAEVLE 177
[Close]
BLAST of mRNA_H-paniculata_contig2831.7731.1 vs. uniprot
Match: A0A7S2FSY7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FSY7_9STRA)

HSP 1 Score: 197 bits (500), Expect = 1.490e-54
Identity = 93/165 (56.36%), Postives = 122/165 (73.94%), Query Frame = 3 
Query:   90 QTGALTLQAPRMTPEGLEVSLHTCPKALARELNYVFPGVEL-GACLAVPTTQKAKMDLVGMGEKVETEKDRLLNSFVTFASVLCEEIREAGYWADYIDPCSGLPMIT-NGNKVYSEVDGMQLLLQYRVMNAGSCKVLLHPQWGSSVYPASLFCNAPADVVKKLLE 578
            +T +  L  PRM   GLEVS+  CPKA+ REL +VF G  +    +A+PT Q ++MDLV +G+ VE EKDR LN F+ F   +CE++R  GYWADYIDPCSGLPM+T N NKVYSEVDGMQ+L+ Y +MNA  CK+LLHP+WGS+VYPA++F +AP   + +LL+
Sbjct:   33 ETPSNVLIKPRMVARGLEVSVCQCPKAMRRELKHVFTGKTVTDDWIAIPTNQHSEMDLVNVGDDVEFEKDRCLNVFMDFGKAICEQLRSCGYWADYIDPCSGLPMLTPNCNKVYSEVDGMQMLMHYPIMNAAMCKILLHPKWGSAVYPATVFTDAPFSAISQLLK 197
[Close]
BLAST of mRNA_H-paniculata_contig2831.7731.1 vs. uniprot
Match: A0A7S2CG30_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CG30_9STRA)

HSP 1 Score: 193 bits (490), Expect = 7.500e-54
Identity = 96/171 (56.14%), Postives = 124/171 (72.51%), Query Frame = 3 
Query:   66 FMAVRRLNQTGALTLQAPRMTPEGLEVSLHTCPKALARELNYVFPGVELG-ACLAVPTTQKAKMDLVGMGEKVETEKDRLLNSFVTFASVLCEEIREAGYWADYIDPCSGLPMIT-NGNKVYSEVDGMQLLLQYRVMNAGSCKVLLHPQWGSSVYPASLFCNAPADVVKKL 572
            FMA R+  Q+  +    P     G EVS+  CPK   RE+ ++FPG+++  + LA+PT Q + MDLV +G+ VE+EKDR L  F+     LC EI+  G+WADYIDPCSGLPM+T + NKVYSEVDGMQ+LLQY+VMNAG CKVLLHP+WG +VYPA++F NAP DVV +L
Sbjct:    7 FMAQRKTKQSNVVVGPCP--IKNGTEVSVCRCPKQFLREIRHIFPGLDIDESLLALPTAQHSVMDLVNVGDDVESEKDRCLIQFMELGKSLCLEIQARGHWADYIDPCSGLPMMTPDCNKVYSEVDGMQMLLQYQVMNAGPCKVLLHPRWGGAVYPATMFTNAPEDVVLEL 175
[Close]
BLAST of mRNA_H-paniculata_contig2831.7731.1 vs. uniprot
Match: A0A7S2Y0K1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0K1_9STRA)

HSP 1 Score: 192 bits (487), Expect = 2.430e-53
Identity = 95/164 (57.93%), Postives = 119/164 (72.56%), Query Frame = 3 
Query:   96 GALTLQAPRMTPEGLEVSLHTCPKALARELNYVFPGVELGA--CLAVPTTQKAKMDLVGMGEKVETEKDRLLNSFVTFASVLCEEIREAGYWADYIDPCSGLPMITN-GNKVYSEVDGMQLLLQYRVMNAGSCKVLLHPQWGSSVYPASLFCNAPADVVKKLLE 578
            G + LQ+PR+T + +EVS+H  P+AL  EL +VFP   L +  CLAVPT Q++  DLV  G++VE EKDR LN F +FA  +CE +  AG+WADYIDPCSGLPMI    N V+SEV+ MQ+LL YRV+NAG CKVLLHP WGSSVYPA+LF  AP   +  +LE
Sbjct:    5 GHVVLQSPRLTGDSMEVSVHIAPRALLSELRHVFPNRSLYSEGCLAVPTLQQSTQDLVNWGDEVELEKDRCLNVFSSFARTVCERLIAAGHWADYIDPCSGLPMIERESNSVFSEVECMQVLLHYRVLNAGMCKVLLHPTWGSSVYPATLFTQAPYSELATILE 168
[Close]
BLAST of mRNA_H-paniculata_contig2831.7731.1 vs. uniprot
Match: A0A061SLZ4_9CHLO (Uncharacterized protein (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SLZ4_9CHLO)

HSP 1 Score: 188 bits (478), Expect = 2.410e-52
Identity = 92/148 (62.16%), Postives = 107/148 (72.30%), Query Frame = 3 
Query:  135 GLEVSLHTCPKALARELNYVFPGVELGACLAVPTTQKAKMDLVGMGEKVETEKDRLLNSFVTFASVLCEEIREAGYWADYIDPCSGLPMITNGNKVYSEVDGMQLLLQYRVMNAGSCKVLLHPQWGSSVYPASLFCNAPADVVKKLLE 578
            GLE S+H  P  + RE+ YVFP V+L   L +PT QK+  DLV MGE VE EKDRLL  FV +A  +CE++   GYWADYIDPCSGLPMI+ G  VYSEVD +  LL Y+  NAG CK+LLHPQWGSSVYPASLF  APA+   KLLE
Sbjct:   15 GLEYSVHELPAKIRREVAYVFPDVDLQGMLVIPTCQKSDQDLVQMGEAVENEKDRLLERFVDWAKPVCEKLISWGYWADYIDPCSGLPMISPGQSVYSEVDALTALLGYKTQNAGCCKILLHPQWGSSVYPASLFTKAPAE---KLLE 159
[Close]
BLAST of mRNA_H-paniculata_contig2831.7731.1 vs. uniprot
Match: A0A7R9UF95_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UF95_9STRA)

HSP 1 Score: 189 bits (480), Expect = 1.040e-51
Identity = 91/177 (51.41%), Postives = 119/177 (67.23%), Query Frame = 3 
Query:   72 AVRRLNQTGALTLQAPRMTPEGLEVSLHTCPKALARELNYVFPGVELG--ACLAVPTTQKAKMDLVGMGEKVETEKDRLLNSFVTFASVLCEEIREAGYWADYIDPCSGLPMITNGNKVYSEVDGMQLLLQYRVMNAGSCKVLLHPQWGSSVYPASLFCNAPADVVKKLLEGRLVAS 596
            A R L       L AP +  E L++S H CPK + REL ++FPGV  G  A +A PT Q A  DLV +GE +E EKD+LLN FV FA  +C +I+E G+WADYIDPCSGLPM T  N +Y EV+GM  LL+Y+ ++AG CKVLLHP+WGS +YPA++F  AP  V  ++L   + A+
Sbjct:   19 ACRALMNRSENMLVAPTVIRENLQISAHRCPKPMVRELRHIFPGVITGEEAPIAFPTVQHAVQDLVRVGESIEDEKDKLLNRFVAFAEEVCSQIKERGFWADYIDPCSGLPMNTPSNGIYPEVEGMTRLLRYQAVSAGPCKVLLHPRWGSQIYPATMFTTAPEHVAVEVLRSFIDAT 195
[Close]
BLAST of mRNA_H-paniculata_contig2831.7731.1 vs. uniprot
Match: A0A6T8PCH7_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A6T8PCH7_9STRA)

HSP 1 Score: 186 bits (472), Expect = 1.400e-50
Identity = 97/183 (53.01%), Postives = 125/183 (68.31%), Query Frame = 3 
Query:   78 RRLNQTGA-LTLQAPRMTPEGLEVSLHTCPKALARELNYVF--------------PGVELGACLAVPTTQKAKMDLVGMGEKVETEKDRLLNSFVTFASVLCEEIREAGYWADYIDPCSGLPMIT-NGNKVYSEVDGMQLLLQYRVMNAGSCKVLLHPQWGSSVYPASLFCNAPADVVKKLLE 578
            ++L Q GA LT Q P +   G+E SLHT PK L RE ++VF                 +L   LA+PT Q A+ D+VG+G  +E EKDRLL  F+ FAS  C +IR  GYW+DY+DPCSGLPM+T + NKVYSEVDGM++LL YR  +AG CK+L HP+WGS+VYP+++F NAP  VVKK+LE
Sbjct:   39 QQLQQQGAALTPQQP-LQQHGIECSLHTLPKPLLREFDHVFGQKYNTNREIVVGGSKSQLVELLAIPTNQHAREDIVGVGIHIEEEKDRLLRVFMAFASEFCNKIRSLGYWSDYMDPCSGLPMLTPDCNKVYSEVDGMEVLLGYRTYDAGFCKILTHPKWGSAVYPSTIFANAPKSVVKKILE 220
[Close]
BLAST of mRNA_H-paniculata_contig2831.7731.1 vs. uniprot
Match: A0A7S2LGH2_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LGH2_9STRA)

HSP 1 Score: 183 bits (465), Expect = 4.730e-50
Identity = 89/157 (56.69%), Postives = 113/157 (71.97%), Query Frame = 3 
Query:  132 EGLEVSLHTCPKALARELNYVFPG--VELGA------CLAVPTTQKAKMDLVGMGEKVETEKDRLLNSFVTFASVLCEEIREAGYWADYIDPCSGLPMIT-NGNKVYSEVDGMQLLLQYRVMNAGSCKVLLHPQWGSSVYPASLFCNAPADVVKKLL 575
            + LE SLH  PK L RE ++VF    V  G+       LA+PT Q+A+ DLV +G+ +E EKDRLLN F+TF   +CE++R  GYWADYIDPCSGLPMI+ N NKVYSEVDGM+ LL Y+  NAG CK+L HP+WGS+VYPA++F  AP +V K L+
Sbjct:   31 DDLECSLHYLPKPLLREFSHVFNNEHVRFGSNDGNLQLLAIPTNQRAREDLVAVGDHIEAEKDRLLNVFLTFGKCICEQLRSQGYWADYIDPCSGLPMISLNCNKVYSEVDGMECLLNYKAYNAGFCKILTHPKWGSAVYPATIFAYAPVEVAKSLM 187
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2831.7731.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K3L9_9PHAE4.190e-8675.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z3S3_9STRA9.510e-6367.55Methylmalonic aciduria and homocystinuria type D p... [more]
A0A7S3XWY3_HETAK3.430e-5560.38Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2FSY7_9STRA1.490e-5456.36Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2CG30_9STRA7.500e-5456.14Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2Y0K1_9STRA2.430e-5357.93Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A061SLZ4_9CHLO2.410e-5262.16Uncharacterized protein (Fragment) n=1 Tax=Tetrase... [more]
A0A7R9UF95_9STRA1.040e-5151.41Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A6T8PCH7_9STRA1.400e-5053.01Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S2LGH2_9STRA4.730e-5056.69Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2831contigH-paniculata_contig2831:12378..17156 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score184.1
Seed ortholog evalue5.7e-44
Seed eggNOG ortholog554065.XP_005851808.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Methylmalonic aciduria and homocystinuria type D protein
EggNOG OGs34HXK@3041,37VDF@33090,KOG3994@1,KOG3994@2759
Ec32 ortholog descriptionMethylmalonic aciduria and homocystinuria type D protein
Ec32 orthologEc-01_009710.1
COG Functional cat.S
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
Exons4
Model size2276
Cds size540
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2831.7731.1prot_H-paniculata_contig2831.7731.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2831 12446..15488 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929859.4876323-UTR-H-paniculata_contig2831:12377..124451622929859.4876323-UTR-H-paniculata_contig2831:12377..12445Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2831 12378..12445 +
1691481043.0050883-UTR-H-paniculata_contig2831:12377..124451691481043.0050883-UTR-H-paniculata_contig2831:12377..12445Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2831 12378..12445 +
1622929859.5642881-UTR-H-paniculata_contig2831:15488..171561622929859.5642881-UTR-H-paniculata_contig2831:15488..17156Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2831 15489..17156 +
1691481043.0473819-UTR-H-paniculata_contig2831:15488..171561691481043.0473819-UTR-H-paniculata_contig2831:15488..17156Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2831 15489..17156 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929859.5066326-CDS-H-paniculata_contig2831:12445..125201622929859.5066326-CDS-H-paniculata_contig2831:12445..12520Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2831 12446..12520 +
1691481043.0148232-CDS-H-paniculata_contig2831:12445..125201691481043.0148232-CDS-H-paniculata_contig2831:12445..12520Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2831 12446..12520 +
1622929859.5239518-CDS-H-paniculata_contig2831:13136..133041622929859.5239518-CDS-H-paniculata_contig2831:13136..13304Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2831 13137..13304 +
1691481043.0228057-CDS-H-paniculata_contig2831:13136..133041691481043.0228057-CDS-H-paniculata_contig2831:13136..13304Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2831 13137..13304 +
1622929859.5400581-CDS-H-paniculata_contig2831:14707..147941622929859.5400581-CDS-H-paniculata_contig2831:14707..14794Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2831 14708..14794 +
1691481043.031009-CDS-H-paniculata_contig2831:14707..147941691481043.031009-CDS-H-paniculata_contig2831:14707..14794Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2831 14708..14794 +
1622929859.5530417-CDS-H-paniculata_contig2831:15278..154881622929859.5530417-CDS-H-paniculata_contig2831:15278..15488Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2831 15279..15488 +
1691481043.0391777-CDS-H-paniculata_contig2831:15278..154881691481043.0391777-CDS-H-paniculata_contig2831:15278..15488Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2831 15279..15488 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2831.7731.1

>prot_H-paniculata_contig2831.7731.1 ID=prot_H-paniculata_contig2831.7731.1|Name=mRNA_H-paniculata_contig2831.7731.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=180bp
MAVRRLNQTGALTLQAPRMTPEGLEVSLHTCPKALARELNYVFPGVELGA
CLAVPTTQKAKMDLVGMGEKVETEKDRLLNSFVTFASVLCEEIREAGYWA
DYIDPCSGLPMITNGNKVYSEVDGMQLLLQYRVMNAGSCKVLLHPQWGSS
VYPASLFCNAPADVVKKLLEGRLVASKGL*
back to top

mRNA from alignment at H-paniculata_contig2831:12378..17156+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2831.7731.1 ID=mRNA_H-paniculata_contig2831.7731.1|Name=mRNA_H-paniculata_contig2831.7731.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4779bp|location=Sequence derived from alignment at H-paniculata_contig2831:12378..17156+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATAGCACGCAAGCATTCTATCCTACCAGGAGCCGGCGGGTGTGCTTCAAG
GGTTGGTCGAACTAGTTCATGGCGGTTCGTAGGCTCAACCAGACCGGAGC
CCTCACGCTTCAGGCTCCTCGTATGACTCCTGAGGGCCTAGAGGTAAGCA
CGTAAGCACGCAAGCACTTCACCAGGTTTTCGCAATACAGATGATGACAA
ACTCCAAATTTCACATCCTCTCATCTCGTGTTACACCACCTTATAGTTTA
TGTCAATCTCATTTAAAAAATTGAACTGTATTAATGACAGACAGACAGGT
GGTGCACCACTGTACACCAGCTCAAGTGTCCAGCCCGCCCCCACCTGACA
CGTTAAACATCGATAGTTCCATTGGGATGCCGAGGCAATGAGTTGTTATT
GAATTCCTCAACTAGCGGCAATGTTATTGATTGCCAAGTCTCTCCTTTGC
ACGTCTCTATCAATATCTCTCGAAGAGAGCAACCGACCCAAACACCTGAA
ACAGCAAAATTCTCTATTATAGTGCTGTGTCAGGTGAAGGTTCTGTGAAA
CACGTATGATACTTTCAGAGATATCCAATCCTCGCCAGTCGCACATCTTC
CAGCCCAATGAAGTCGTAGTACCCACACTCAAGCATATGAAGCCGAGCTT
GATAAACTTTCTAATGCCAATGCAGACTGAATACACGCCATGTCCGTGCT
AAATTGCCAACAAAACAGTATGTCTTTCTCTCGTTCATCTTCGCTCTGTC
TGTGCCCAGGTGTCATTGCATACATGCCCCAAGGCGCTAGCGCGAGAGCT
GAATTATGTCTTCCCTGGTGTGGAATTGGGAGCGTGCCTCGCAGTACCGA
CAACTCAAAAGGCAAAAATGGACCTGGTCGGAATGGGCGAGAAGGTCGAA
ACGGAGAAGGACCGGCTCTTGAACTCGGTAAGAGGGAAGAAACCCCCGTG
GTTCGTCTTGGCCCCAAAGACGAGGTACTATCGTGTAGTTCCACTAGACT
CTCGACATGTAGACAACAGACAGGCAGTATCACCCAGTCTGACGGGAAAA
TTAATGTGTCGCGGATAAATGGAAAGTCGAGTTACTCGCGCACACGGACG
TACAGTTACAACGGTAGTACCCTCAGTCTCTCCATGTCATATCTTTCATA
ACTGTAGTATCTAACCTTTACTGTACTACTGTACTGTACTCCACCGTGGA
AGGTATACCTGACTCGGTGCAAATTGTACGTCCGCGCTGTGCACAGCTTT
TGTTGGGACATCTCCTCTCTGCGAGGGCTATTCTTCATCGATTTGGTGTG
TGTTCTGTGTTTGCTAGACAGGAGTTTCAGTTCAGTAACAGATTGAAAGA
CCTCCGAAAAAATGAAGAGGACTTTCATAATAATATAACTGTCTGTGTTT
CGTGTTTTTGTGCTCTTGGCATGGGCATGGCGATTTTCGCATTTCGTGGG
GGGGTAAAACTTCCCACTTATTGTATATGAAAGGAAGAATTCGGTGTTGC
TCAACGCGTGCAAGGTGGGTCTTTTACGTGGCACGCATAGCAAACCTCGA
CCAGCCTTGTTACTAAATTTGAGTTTTGTACAGAATGCTCGGTACTTTGA
GACCAGCGTGCATACCTCCCATTCTGATCTCCAATGCGCTAATCCGAAGA
GCTCGGCGTGTGCGTATTTTTATTCGATCGCCGCATGCACGTGCGCTGTT
GTGTCATTCTCCGCATCAAATTGGCTCGGTGACTCATCGAGGTACGCCGC
CAAACGGAACTGGGCTAATTTTTAGCGAATGATCTGTTTTATCTTCCGTT
TTGAGTATTCGCAAGGCACCATCCAGCATCCGAGGAAAATACCTCACCAG
GTACTTGTATTCGGAAGATGCATCTGCATTGGTTGAACTATAAAACAAAA
CTGTCTGTACTAGTATTCTCTTTTTGCTGCTGGGCACGCGAACTTTTTAC
GTAAGCTGTACACTGTCCCGTCCGCACTGAAATGAAGCATAGGTATAATC
AGTCCAAGCTTCAAGTTTAGTCGCCCTTTCTCATATTGTATTTTTTTCAA
CACACGGTAAATCCTAGCAGAGCTACCATGTATCAGATGCACAAACGCAA
CCCAGCTACGTCACGGATACGCTTACATGAACATGCTCCCGGCTAATTTG
TAGTATTTTCCAGGCGTTTGTTTGTGCCCATCTCCGTTAGACGCGGGTGA
ATCGAAGGGGCCAAGCTGCGTACTCGTCGTATCTGAATACCCTGCCCCCC
ATCCATGTCGCCCCTGCCCTCGCGCCGCGCGCGTACACCGAACATGAATC
TTGGATATGCGGGATCGGCGCTGTGGTCAGTTTGTCACCTTCGCGTCGGT
TTTGTGCGAGGAGATCAGAGAAGCAGGCTACTGGGCCGACTACATCGATC
CGTGCTCTGGTCTGCCGGTACGTGGTGGGGTAACTGGCTGGTTTTGGTGC
ACTGTATTCTTGGGGTGTAGATGCATGATCGCGTTGGCGGTATTGGTGGA
GGTCTGACCGTGTTTGGATGTTACGGCCATGCAGACGCCGCAGCCAGGGA
ATAGTCTCAACAAAAGGAAACGAGGTAAACATATATTCGTAGTTATTCCT
TTGCGTGGTACAAGATATATCCTCACGTTGAACAGTATTGTTGAGTAGGA
CGGACAGTTTCGCTCTCTTTCGTTCTCGGTTTAGATATTTAGTACCAGCA
GCTATTCGCGGGATGGCTGCAGGTTGCTTTCCTTATGGCATAATTTGCAC
ATGCGCCCAAATTTTTGCTACAGGGGTGACCAAGTCACCGCGAATAGACG
ATGTACCGCATGTTAATCTGTTACCAATCAAAATATTGGACTTACACCCG
CCACCTCGATCCTGCGGCTATGTCTGGTTAAACCTCACCCGTATCGAATA
GATGATTACGAACGGGAACAAGGTGTATAGCGAGGTGGATGGTATGCAGC
TTCTTCTACAGTACCGAGTGATGAACGCGGGCAGCTGCAAGGTGCTGTTG
CATCCGCAATGGGGCTCCTCCGTCTATCCAGCGTCTCTATTCTGTAACGC
CCCGGCCGACGTAGTCAAGAAGTTGCTGGAGGGGCGATTGGTTGCCTCTA
AGGGCCTCTAAGCAAGGCCAAGTCCAGGCTGGCCAACTTGCCCAAGGCGA
AAAACAATAACTCATCCCCGAGTAACAGATGTGACGCATGCCTGCCAGCA
TGCACACATGCAGGAGCGCAATGAGCTAGCGAGGACAATCGAAGGAACTA
GCGTCGGGTTATTCGACATTTCTCGGCAAAGTGCGCTTGAGAGACAGACA
TACTCGGAGCCAAGTACGGTACCCAACCGGCCGACTGAGAAAGGCAGTTA
TTTTTCCCGGTGACTTGTCTCGATGCGTGTTGGATGAAGTCGGGTGGGTG
GTCCACGAAGTTGTGACGCTTGCGTGCGAGCCCTGGGATTCGTCTTTGCT
CGGATACATGAAGGTCACTTCGCCAGCTATGGCAACAGTCAGCCGCTGAC
TTTTGTCTCTACTAGCTCAGACGTCCCTGCATGTCCGAAATATATTGATC
TTTGGTTGTATTGCTTTCACCGAGCTCACTGCCAGTCCTTGGAGGATTGG
TGATGGTCACTTGTGCGTTACAGCCCATACAAAAGCAATATCTTGAGCGG
ACCACGCCTGATGTATCGATTGGACTTGAGAAGGATGGATGGGAGATGGA
CAAACATGAGCGAAGAGAAAGAAGATGAGAGGGAATGTTGAGTATTGGGC
ATGATGTATGACTATGGCTGCGAGTCAAGTCGCTCTGTTAGTTTATGGAA
ATTGTGTGTATGTGTGTGTGTGTGCTGAAATCGAATCTAATTCAATCCGT
GGTCTTTATTTTCCTACTCTTTTACGGCTGTTTTTTTATGTGTATGTGTT
TCGGGCGCCAAAAGTAATTTTCTATTATTGCCATTGATTGTGCCTTACAT
GTTTTAGTGTTGGGAAATAATGGGGAGCTTGAAGAAGGGGCCAGATTGTT
GCAGCATTTGTCGGACGTTGTTGAGCAGCATTTCTGCGACTACATTGTGG
TTGGGGCCTGAACCATGATGTGAACATGGCGAACCACAACCTGTGGAGGA
CCGGGAGGCAACATTGACGTGTTTTTTTTAGTCAGAGAGGTAAGGCCATG
CATGTGCGAGCGAGGATACCTCCAAACGATCATGCGAAAATACTTTGAGG
AACGCTGCGGGCCGGCATGTTGTATTCGGTTCAAATAACGTTTGTCATAC
TGCAGGTTTACTGTGGCGAGTGTAAAATAGGATTTACATGCGAACGGCTC
GTTATCAGAGAACTTTTTTTTTTTTTGCCTCAAGACCTTGGGGAGACAAG
AAGAGGGGCATACAACACACAAGAGAGAGGACACCTTGGAACAGGGGATG
TGATAGCCAGGAAATGCTAGCGGGTGTTGAGGTTTTTGCGTGAAAGTTCA
TTGCGAGTTTCGTGTTTTCGTGTGTATGTTGTTTGTGGCTTTTTTTTGTA
GGTGTACATCATATTGTTTGTTTTCGGTCACTCGACACGGCTGCATGACC
GAGGCTGCCGCTCTTAGTTCATGATGTTTGTATGCATCTCATGTGTAGAC
GCTTGCAAGGCATGTTATGTTGTGTTTAACGATAGCGAGATTAGAGAAAA
TTAATTGTGTGAGCTCGGTGGATTGGTGTTGTGGCGATGAGTGGTCGCTT
CTTGGAGTGCGGTGATATCATATGAGAGAGTAAGCTAATACGTGCGCGCC
TTTTGACCCATGGAGGACTCGGAAGTCGC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig2831:12378..17156+

>mRNA_H-paniculata_contig2831.7731.1 ID=mRNA_H-paniculata_contig2831.7731.1|Name=mRNA_H-paniculata_contig2831.7731.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1080bp|location=Sequence derived from alignment at H-paniculata_contig2831:12378..17156+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGGTTCGTAGGCTCAACCAGACCGGAGCCCTCACGCTTCAGGCTCC
TCGTATGACTCCTGAGGGCCTAGAGATGGCGGTTCGTAGGCTCAACCAGA
CCGGAGCCCTCACGCTTCAGGCTCCTCGTATGACTCCTGAGGGCCTAGAG
GTGTCATTGCATACATGCCCCAAGGCGCTAGCGCGAGAGCTGAATTATGT
CTTCCCTGGTGTGGAATTGGGAGCGTGCCTCGCAGTACCGACAACTCAAA
AGGCAAAAATGGACCTGGTCGGAATGGGCGAGAAGGTCGAAACGGAGAAG
GACCGGCTCTTGAACTCGGTGTCATTGCATACATGCCCCAAGGCGCTAGC
GCGAGAGCTGAATTATGTCTTCCCTGGTGTGGAATTGGGAGCGTGCCTCG
CAGTACCGACAACTCAAAAGGCAAAAATGGACCTGGTCGGAATGGGCGAG
AAGGTCGAAACGGAGAAGGACCGGCTCTTGAACTCGTTTGTCACCTTCGC
GTCGGTTTTGTGCGAGGAGATCAGAGAAGCAGGCTACTGGGCCGACTACA
TCGATCCGTGCTCTGGTCTGCCGTTTGTCACCTTCGCGTCGGTTTTGTGC
GAGGAGATCAGAGAAGCAGGCTACTGGGCCGACTACATCGATCCGTGCTC
TGGTCTGCCGATGATTACGAACGGGAACAAGGTGTATAGCGAGGTGGATG
GTATGCAGCTTCTTCTACAGTACCGAGTGATGAACGCGGGCAGCTGCAAG
GTGCTGTTGCATCCGCAATGGGGCTCCTCCGTCTATCCAGCGTCTCTATT
CTGTAACGCCCCGGCCGACGTAGTCAAGAAGTTGCTGGAGGGGCGATTGG
TTGCCTCTAAGGGCCTCTAAATGATTACGAACGGGAACAAGGTGTATAGC
GAGGTGGATGGTATGCAGCTTCTTCTACAGTACCGAGTGATGAACGCGGG
CAGCTGCAAGGTGCTGTTGCATCCGCAATGGGGCTCCTCCGTCTATCCAG
CGTCTCTATTCTGTAACGCCCCGGCCGACGTAGTCAAGAAGTTGCTGGAG
GGGCGATTGGTTGCCTCTAAGGGCCTCTAA
back to top