mRNA_H-paniculata_contig28306.7730.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig28306.7730.1
Unique NamemRNA_H-paniculata_contig28306.7730.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig28306.7730.1 vs. uniprot
Match: A0A6H5KHN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHN7_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 5.360e-45
Identity = 96/226 (42.48%), Postives = 132/226 (58.41%), Query Frame = 1
Query:    1 EPVLNHKGVEQ-RGASRM--FGDVKLT--EPWHNLTLRRLIEDGILERRLAEFLWSD-VWHHVLAVLQEIGLTFPLPDDRDGTLVVPLRLPETRPADVGQSFATKLPDDQISLSVTWKMYDGVPPGAIERIMSKCCHLGTAVVYWRLGVV---ARVDHDYEES-----RLRLEYSMDKNELVVAVWGDLTKAAPWAIICCVCTVVRKMTLDFPGLRWDASLGCPDH 636
            +P+LNHK  E   G  ++   GD+ LT  +P   ++  RL  +G+LE RLA  +WS+ +  +VL  L  +GL FPL  D  G LVV LRL   RP  VG+   T   D   +L+ +WKM+ GVPPGAIE+++++CC LG   V+WR GV+   A  D D +E       + LEYS   NEL   V+GD++  APW ++    + VR M +DFPGLR   SL CP H
Sbjct:   90 KPLLNHKDEETFEGLVKLGGTGDMCLTLEDPLDIISWFRLKREGVLEPRLARTMWSNGLSEYVLPTLTTLGLAFPLEADPAGGLVVLLRLTPGRPERVGKVMDTFYLDQTPALNASWKMFLGVPPGAIEKVLTRCCSLGGVTVFWRSGVLVHSALRDEDGDEDGSDIFAVVLEYSSSDNELTAQVFGDISTQAPWTVLSYAASAVRLMLMDFPGLRSRGSLKCPQH 315          
BLAST of mRNA_H-paniculata_contig28306.7730.1 vs. uniprot
Match: A0A6H5K516_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K516_9PHAE)

HSP 1 Score: 169 bits (429), Expect = 6.740e-45
Identity = 90/241 (37.34%), Postives = 136/241 (56.43%), Query Frame = 1
Query:    1 EPVLNHKGVEQRGASRMFGD-----VKLTEPWHNLTLRRLIEDGILERRLAEFLWSD-VWHHVLAVLQEIGLTFPLPDDRDGTLVVPLRLPETRPADVGQSFATKLPDDQISLSVTWKMYDGVPPGAIERIMSKCCHLGTAVVYWRLGVVARVDHDYEESR----LRLEYSMDKNELVVAVWGDLTKAAPWAIICCVCTVVRKMTLDFPGLRWDASLGCPDHAENIIGISEVQRMGDGLVD 693
            +P+LNHK  E        GD     + L +P    +  RL ++G+LE RLA  +W D +  +VL  L  +G TFPL +D D  LVV LRL   RP  VG+   T       + S +WK++ GVPPGA+E+++++CC LG    +WR GV+       ++ R    + LEYS   NEL   ++GD++  A W  +  V + V+ M +DFPGLRW  SL CP+H + ++ + + +R GD L++
Sbjct:  235 KPLLNHKDQETFDGRVNLGDTGDTPITLDDPSDIKSWDRLKKEGVLEPRLAYAMWPDGLSEYVLPTLASLGFTFPLENDPDEGLVVLLRLTPNRPESVGKVIDTFCSGLTPAFSASWKIFLGVPPGAVEKVLTRCCGLGVVRTFWRYGVLVHGSFGAQDGRRTFAVVLEYSSTDNELTAKIFGDISTPAAWVALSYVMSAVKLMLMDFPGLRWKGSLKCPEHGDAMLFVDKARRGGDKLLE 475          
BLAST of mRNA_H-paniculata_contig28306.7730.1 vs. uniprot
Match: A0A6H5K1K4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1K4_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 3.760e-44
Identity = 91/241 (37.76%), Postives = 135/241 (56.02%), Query Frame = 1
Query:    1 EPVLNHKGVEQRGASRMFGD-----VKLTEPWHNLTLRRLIEDGILERRLAEFLWSD-VWHHVLAVLQEIGLTFPLPDDRDGTLVVPLRLPETRPADVGQSFATKLPDDQISLSVTWKMYDGVPPGAIERIMSKCCHLGTAVVYWRLGVVARVDHDYEESR----LRLEYSMDKNELVVAVWGDLTKAAPWAIICCVCTVVRKMTLDFPGLRWDASLGCPDHAENIIGISEVQRMGDGLVD 693
            +P+LNHK  E        GD     + L +P    +  RL ++G+LE +LA  +W D +  +VL  L  +GLTFPL +D D  LVV LRL   RP  VG+   T       + S +WK++ GVPPGA+E+++++CC LG    +WR GV+       ++ R    + LEYS   NEL   ++GD++  A W  +  V + VR M +DFPGLRW  SL CP H + ++ +   +R GD L++
Sbjct:  374 KPLLNHKDQETFDGRVNLGDTGDTPITLDDPSDITSWDRLKKEGVLEPKLAYAMWPDGLSEYVLPTLASLGLTFPLENDPDEGLVVLLRLKPNRPESVGKVIDTFCSGLTPAFSASWKIFLGVPPGAVEKVLTRCCGLGGVRTFWRYGVLVHGSLGVQDGRRTFAVVLEYSSTDNELTAKIFGDISTPAAWVALSYVMSAVRLMLVDFPGLRWKGSLKCPQHGDAMLFVDMARRGGDKLLE 614          
BLAST of mRNA_H-paniculata_contig28306.7730.1 vs. uniprot
Match: D8LCS7_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS7_ECTSI)

HSP 1 Score: 164 bits (416), Expect = 6.870e-43
Identity = 95/237 (40.08%), Postives = 131/237 (55.27%), Query Frame = 1
Query:    1 EPVLNHKGVEQRGASRMFGD-----VKLTEPWHNLTLRRLIEDGILERRLAEFLWSD-VWHHVLAVLQEIGLTFPLPDDRDGTLVVPLRLPETRPADVGQSFATKLPDDQISLSVTWKMYDGVPPGAIERIMSKCCHLGTAVVYWRLGVVARV---DHD-YEESRLRLEYSMDKNELVVAVWGDLTKAAPWAIICCVCTVVRKMTLDFPGLRWDASLGCPDHAENIIGISEVQRMGD 681
            +P+LNHK  E        GD     + L +P    +  R   +G+LE RLA  +W D +  +VL  L  +GLTFPL +D  G LVV LRL   RP  VG+   T   D   + + TWK++ GVPPGAIE+++++CC LG   ++WR GV+      D D Y      LEYS  +N L   ++GD + +A W  +  V + V  M LDFPGLRW  SL CP H + I+  ++V R GD
Sbjct:  919 KPLLNHKDEETYEGFVNLGDTGDKQITLEDPLDIASWWRHKNEGVLEPRLAYCMWPDGLSEYVLPTLASLGLTFPLENDPTGGLVVLLRLKPDRPERVGKVIYTFCLDQTPAFNATWKIFLGVPPGAIEKVLTRCCSLGGVQIFWRNGVLVHGGLGDEDGYGIFAAVLEYSSAENGLTAQIFGDTSFSAAWVALSYVMSAVSLMLLDFPGLRWRGSLKCPQHGDTILLTNKVTRAGD 1155          
BLAST of mRNA_H-paniculata_contig28306.7730.1 vs. uniprot
Match: A0A6H5L0H4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0H4_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 1.960e-42
Identity = 91/241 (37.76%), Postives = 132/241 (54.77%), Query Frame = 1
Query:    1 EPVLNHKGVEQRGASRMFGD-----VKLTEPWHNLTLRRLIEDGILERRLAEFLWSD-VWHHVLAVLQEIGLTFPLPDDRDGTLVVPLRLPETRPADVGQSFATKLPDDQISLSVTWKMYDGVPPGAIERIMSKCCHLGTAVVYWRLGVVARVDHDYEESR----LRLEYSMDKNELVVAVWGDLTKAAPWAIICCVCTVVRKMTLDFPGLRWDASLGCPDHAENIIGISEVQRMGDGLVD 693
            +P+LNHK  E        GD     + L +P    +  RL  +G+LE RLA  +W D +  +VL  L  +GLTFPL +D    LVV LRL  TRP  VG+   T       + S +WK++ GVPPGAIE+++++CC LG    +WR GV+       ++ R    + LEYS   NEL   ++G ++  A W  +  V + VR M +DFPGLRW  SL CP H + +  ++  +  GD L++
Sbjct:  201 KPLLNHKDQENFDGCVNLGDTGDARITLDDPLDIASWDRLKREGVLEPRLAYAMWPDGLSEYVLPTLASLGLTFPLENDPAEGLVVLLRLKPTRPGSVGKVIETFCSGLTPAFSASWKIFLGVPPGAIEKVLTRCCGLGRVRTFWRYGVLVHGGLGVQDGRSTFAVVLEYSSAGNELTAQIFGGISTPAAWVALSYVMSAVRLMLVDFPGLRWKGSLKCPQHGDAMPFVNMARSDGDKLLE 441          
BLAST of mRNA_H-paniculata_contig28306.7730.1 vs. uniprot
Match: D7FL89_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL89_ECTSI)

HSP 1 Score: 163 bits (412), Expect = 2.290e-42
Identity = 99/243 (40.74%), Postives = 136/243 (55.97%), Query Frame = 1
Query:    1 EPVLNHKGVEQ--RGASRMFGDVKLT--EPWHNLTLRRLIEDGILERRLAEFLWSD-VWHHVLAVLQEIGLTFPLPDDRDGTLVVPLRLPETRPADVGQSFATKLPDDQISLSVTWKMYDGVPPGAIERIMSKCCHLGTAVVYWRLGVVARVDHD----YEESRLRLEYSMDKNELVVAVWGDLTKAAPWAIICCVCTVVRKMTLDFPGLRWDASLGCPDHAENIIGISEVQRMGDGLVDNGT 702
            +P+LNH+  E   RG   + GD  +T  E  H  +  RL   G+LE  LA  LW D + ++VL  L  +GLT+PL DD    LVV LRL E RP DVG+       D    LSV WK++ GVPPGAIE+++++CC LGT   +WR GV+ +         +   L +EYS D  E+ + V+G +  AAPWA +    +V + M  +FPGLRW ASL CP H +++       R GD L+   T
Sbjct:  600 KPLLNHRDDEDPLRGDVSL-GDTGITLKEDKHIASWNRLKGHGVLEPELAGVLWPDGLSNYVLPTLDSLGLTYPLDDDPAEGLVVLLRLDEKRPEDVGKELDDFRRDHTAVLSVKWKIFLGVPPGAIEKMLTRCCRLGTLRTFWRFGVLVQGSLGGGMAAKTFALLIEYSHDTCEVDMEVYGSIRTAAPWAALSYGISVFQAMCSEFPGLRWRASLKCPQHEQDMQISRTATRRGDKLLHGAT 841          
BLAST of mRNA_H-paniculata_contig28306.7730.1 vs. uniprot
Match: A0A6H5KHF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHF4_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 3.140e-42
Identity = 90/235 (38.30%), Postives = 132/235 (56.17%), Query Frame = 1
Query:    1 EPVLNHKGVEQRGASRMFGD-----VKLTEPWHNLTLRRLIEDGILERRLAEFLW-SDVWHHVLAVLQEIGLTFPLPDDRDGTLVVPLRLPETRPADVGQSFATKLPDDQISLSVTWKMYDGVPPGAIERIMSKCCHLGTAVVYWRLGVVARVDHDYEESR-------LRLEYSMDKNELVVAVWGDLTKAAPWAIICCVCTVVRKMTLDFPGLRWDASLGCPDHAENIIGISEV 666
            +P+LNHK  E        GD     + L +     + RRL  +GILE RLA  +W + +  +VL  L  +GLTFPL +D  G LVV LRL   RPA VG+   T    +    S +WK++ GVP GA+E+++++CC +G    +WR GV+  V   + ++R       + LEYS   NEL   ++G+ ++ APWA +  V + VR + L+FPGLRW   L CP H + ++  SEV
Sbjct:   99 KPLLNHKDTETYEGFVNLGDNGDSCITLHDQVDIASWRRLKSEGILEPRLAHVIWPAGLSEYVLPTLVSLGLTFPLENDDAGGLVVLLRLKPGRPARVGKVIDTFCSQNIPVFSASWKIFLGVPAGAMEKVLTRCCSIGDVQTFWRFGVL--VHGSFGDARDGSGDFAVVLEYSSTNNELTAQIYGNKSQPAPWAALSYVISSVRFVLLEFPGLRWRGLLKCPQHGDPMLLDSEV 331          
BLAST of mRNA_H-paniculata_contig28306.7730.1 vs. uniprot
Match: D7FL98_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL98_ECTSI)

HSP 1 Score: 162 bits (410), Expect = 4.270e-42
Identity = 97/236 (41.10%), Postives = 134/236 (56.78%), Query Frame = 1
Query:    1 EPVLNHKGVEQ--RGASRMFGDVKLT--EPWHNLTLRRLIEDGILERRLAEFLWSD-VWHHVLAVLQEIGLTFPLPDDRDGTLVVPLRLPETRPADVGQSFATKLPDDQISLSVTWKMYDGVPPGAIERIMSKCCHLGTAVVYWRLGVVARVDHD----YEESRLRLEYSMDKNELVVAVWGDLTKAAPWAIICCVCTVVRKMTLDFPGLRWDASLGCPDHAENIIGISEVQRMGD 681
            +P+LNH+  E   RG   + GD  +T  E  H  +  RL   G+LE  LA  LW D + ++VL  L  +GLT+PL DD    LVV LRL E RP DVG+       D    LSV WK++ GVPPGAIE+++++CC LGT   +WR GV+ +             L +EYS DK E+ + V+G ++ AAPWA +    +V + M  +FPGLRW A+L CP H +++       R GD
Sbjct:  636 KPLLNHRDDEDPLRGDVSL-GDTGITLKEDKHIASWNRLKGHGVLEPSLARVLWPDGLSNYVLPALDSLGLTYPLDDDPAEGLVVLLRLDEKRPEDVGKELDDFRRDHTAVLSVKWKVFLGVPPGAIEKMLTRCCRLGTLRTFWRFGVLVQGSLGGGIAARTFALVVEYSHDKCEVDMKVYGSISTAAPWAALSFGISVFQAMCSEFPGLRWRAALKCPQHEQDMQISKAATRPGD 870          
BLAST of mRNA_H-paniculata_contig28306.7730.1 vs. uniprot
Match: A0A6H5KSZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSZ8_9PHAE)

HSP 1 Score: 161 bits (407), Expect = 1.010e-41
Identity = 95/246 (38.62%), Postives = 130/246 (52.85%), Query Frame = 1
Query:    1 EPVLNHKGVEQRGASRMFGD-----VKLTEPWHNLTLRRLIEDGILERRLAEFLWSD-VWHHVLAVLQEIGLTFPLPDDRDGTLVVPLRLPETRPADVGQSFATKLPDDQISLSVTWKMYDGVPPGAIERIMSKCCHLGTAVVYWRLGVVARVDHDYEESRLR------LEYSMDKNELVVAVWGDLTKAAPWAIICCVCTVVRKMTLDFPGLRWDASLGCPDHAENII---GISEVQRMGDGLVD 693
            +P+LNHK  E        GD     + L +P    +  RL   G+LE RLA  +W + +  +VL  L  +GLTFPL DD    LVV LRL   RP  VG +  T   D   +LS +WK++ GVPPGAIE+++++CC LG    +WR GV+            R      LEYS   NEL   ++GD++  APW ++  V + V  M LDFPGLRW  SL CP H + ++     S V  +G   +D
Sbjct:  539 KPLLNHKDQETFDGLVSLGDTGDARITLDDPSDIASWGRLKSQGVLEPRLAYAIWPNGLSEYVLPALAFLGLTFPLEDDPAKGLVVLLRLKPDRPESVGHAIDTFCLDHTPALSASWKIFLGVPPGAIEKVLTRCCGLGGVRTFWRYGVLVHGGLGEVHVGRRGIFAVVLEYSSTDNELAAQIFGDISTPAPWVVLSYVMSAVSLMLLDFPGLRWRGSLTCPQHGDTMLLANKASPVAGLGAAAID 784          
BLAST of mRNA_H-paniculata_contig28306.7730.1 vs. uniprot
Match: D7FUC9_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC9_ECTSI)

HSP 1 Score: 161 bits (407), Expect = 1.060e-41
Identity = 94/241 (39.00%), Postives = 135/241 (56.02%), Query Frame = 1
Query:    1 EPVLNHKGVEQRGASRMFGD-----VKLTEPWHNLTLRRLIEDGILERRLAEFLWSD-VWHHVLAVLQEIGLTFPLPDDRDGTLVVPLRLPETRPADVGQSFATKLPDDQISLSVTWKMYDGVPPGAIERIMSKCCHLGTAVVYWRLGVVARV---DHD-YEESRLRLEYSMDKNELVVAVWGDLTKAAPWAIICCVCTVVRKMTLDFPGLRWDASLGCPDHAENIIGISEVQRMGDGLVD 693
            +P+LNHK  E        GD     V L +P    +  RL   G+LE RLA  +W + +  +VL  L  +GLTFPL +D  G LVV LRL   RP  VG+   T   D   + S +WK++ GVP GAIE+++++CC LG    +WR GV+      D D +E   + LEYS   NEL   ++GD++  APW  +  V + VR M LDFPGLR   SL CP H + ++ ++++ + G  L++
Sbjct:  583 KPLLNHKDEETFDGLVNLGDTGDTRVTLEDPLDIASWGRLKNQGVLEPRLARTMWPNGLSKYVLPTLASLGLTFPLKNDPAGGLVVLLRLNPDRPERVGKVIDTFCLDQTPAFSTSWKIFLGVPAGAIEKVLTRCCSLGGVQTFWRSGVLVHGGLGDEDGHEIFAVVLEYSSSDNELTAQIFGDISTPAPWVALSYVISAVRLMLLDFPGLRSRGSLKCPQHGDAMLLVNKMTQAGVKLLE 823          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28306.7730.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KHN7_9PHAE5.360e-4542.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K516_9PHAE6.740e-4537.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1K4_9PHAE3.760e-4437.76Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D8LCS7_ECTSI6.870e-4340.08LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5L0H4_9PHAE1.960e-4237.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FL89_ECTSI2.290e-4240.74LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5KHF4_9PHAE3.140e-4238.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FL98_ECTSI4.270e-4241.10LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5KSZ8_9PHAE1.010e-4138.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUC9_ECTSI1.060e-4139.00LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig28306contigH-paniculata_contig28306:2090..3002 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score164.9
Seed ortholog evalue4.7e-38
Seed eggNOG ortholog2880.D8LCS7
KEGG koko:K04730,ko:K04733
KEGG Pathwayko04010,ko04064,ko04620,ko04621,ko04624,ko04722,ko05133,ko05140,ko05142,ko05145,ko05152,ko05162,ko05164,ko05169,map04010,map04064,map04620,map04621,map04624,map04722,map05133,map05140,map05142,map05145,map05152,map05162,map05164,map05169
KEGG ModuleM00686
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005623,GO:0005886,GO:0005911,GO:0009506,GO:0016020,GO:0030054,GO:0042995,GO:0044464,GO:0055044,GO:0071944,GO:0090406,GO:0120025
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGs2QQYD@2759,COG4886@1
EC2.7.11.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Exons2
Model size706
Cds size702
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929859.4209151-CDS-H-paniculata_contig28306:2089..27521622929859.4209151-CDS-H-paniculata_contig28306:2089..2752Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28306 2090..2752 +
1691481042.986257-CDS-H-paniculata_contig28306:2089..27521691481042.986257-CDS-H-paniculata_contig28306:2089..2752Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28306 2090..2752 +
1622929859.4367573-CDS-H-paniculata_contig28306:2961..30001622929859.4367573-CDS-H-paniculata_contig28306:2961..3000Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28306 2962..3000 +
1691481042.9965723-CDS-H-paniculata_contig28306:2961..30001691481042.9965723-CDS-H-paniculata_contig28306:2961..3000Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28306 2962..3000 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig28306.7730.1prot_H-paniculata_contig28306.7730.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig28306 2090..3000 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig28306.7730.1

>prot_H-paniculata_contig28306.7730.1 ID=prot_H-paniculata_contig28306.7730.1|Name=mRNA_H-paniculata_contig28306.7730.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=234bp
EPVLNHKGVEQRGASRMFGDVKLTEPWHNLTLRRLIEDGILERRLAEFLW
SDVWHHVLAVLQEIGLTFPLPDDRDGTLVVPLRLPETRPADVGQSFATKL
PDDQISLSVTWKMYDGVPPGAIERIMSKCCHLGTAVVYWRLGVVARVDHD
YEESRLRLEYSMDKNELVVAVWGDLTKAAPWAIICCVCTVVRKMTLDFPG
LRWDASLGCPDHAENIIGISEVQRMGDGLVDNGT
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mRNA from alignment at H-paniculata_contig28306:2090..3002+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig28306.7730.1 ID=mRNA_H-paniculata_contig28306.7730.1|Name=mRNA_H-paniculata_contig28306.7730.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=913bp|location=Sequence derived from alignment at H-paniculata_contig28306:2090..3002+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCCGGTGCTGAATCACAAGGGTGTTGAGCAGAGGGGTGCGTCGCGTAT GTTCGGAGATGTCAAGCTGACGGAGCCGTGGCATAATCTAACCCTACGGA GGCTAATAGAGGATGGCATCCTGGAGCGCCGACTCGCTGAGTTTTTGTGG TCAGATGTTTGGCATCATGTGCTAGCTGTACTGCAGGAGATCGGTTTGAC CTTCCCATTGCCTGACGACCGAGACGGCACCCTCGTTGTCCCACTGCGTC TTCCAGAGACCCGACCAGCTGATGTTGGCCAAAGTTTCGCAACAAAGCTC CCCGACGATCAGATATCTCTCTCAGTGACCTGGAAAATGTACGACGGCGT TCCTCCCGGAGCCATCGAGAGGATCATGTCTAAGTGCTGCCATCTTGGGA CGGCCGTGGTCTATTGGAGGTTGGGTGTGGTTGCACGTGTTGACCACGAT TACGAGGAATCGCGTCTAAGGCTTGAATACAGCATGGATAAGAATGAGCT GGTGGTGGCGGTGTGGGGAGATCTCACCAAGGCAGCTCCGTGGGCCATCA TCTGCTGTGTGTGTACAGTCGTTCGGAAGATGACCCTGGATTTTCCAGGA CTGCGCTGGGATGCGTCCTTGGGCTGCCCAGATCACGCTGAAAACATCAT CGGCATCTCTGAGGTGCGGGTTATTGTTCCCATTGGTCGACGTGGTGTGT AATATACGGATCGTCACTCTTGATCCCACAACAAGTAACCAGACGTTTTT GTAGTGTGCTTCCTTGTTCAATACCGGTAAACAGCGACCATGCGTTCTAT CCTGCACACATGACTGCACTTTTTTTTGTCTCCGATGGTAATAGTAATTA CTGGTGCTCCCTTCACGCGCAGGTCCAGAGAATGGGTGATGGCTTGGTAG ACAACGGAACCAT
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Coding sequence (CDS) from alignment at H-paniculata_contig28306:2090..3002+

>mRNA_H-paniculata_contig28306.7730.1 ID=mRNA_H-paniculata_contig28306.7730.1|Name=mRNA_H-paniculata_contig28306.7730.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1404bp|location=Sequence derived from alignment at H-paniculata_contig28306:2090..3002+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCCGGTGCTGAATCACAAGGGTGTTGAGCAGAGGGGTGCGTCGCGTAT
GTTCGGAGATGTCAAGCTGACGGAGCCGTGGCATAATCTAACCCTACGGA
GGCTAATAGAGGATGGCATCCTGGAGCGCCGACTCGCTGAGTTTTTGTGG
TCAGATGTTTGGCATCATGTGCTAGCTGTACTGCAGGAGATCGGTTTGAC
CTTCCCATTGCCTGACGACCGAGACGGCACCCTCGTTGTCCCACTGCGTC
TTCCAGAGACCCGACCAGCTGATGTTGGCCAAAGTTTCGCAACAAAGCTC
CCCGACGATCAGATATCTCTCTCAGTGACCTGGAAAATGTACGACGGCGT
TCCTCCCGGAGCCATCGAGAGGATCATGTCTAAGTGCTGCCATCTTGGGA
CGGCCGTGGTCTATTGGAGGTTGGGTGTGGTTGCACGTGTTGACCACGAT
TACGAGGAATCGCGTCTAAGGCTTGAATACAGCATGGATAAGAATGAGCT
GGTGGTGGCGGTGTGGGGAGATCTCACCAAGGCAGCTCCGTGGGCCATCA
TCTGCTGTGTGTGTACAGTCGTTCGGAAGATGACCCTGGATTTTCCAGGA
CTGCGCTGGGATGCGTCCTTGGGCTGCCCAGATCACGCTGAAAACATCAT
CGGCATCTCTGAGGAGCCGGTGCTGAATCACAAGGGTGTTGAGCAGAGGG
GTGCGTCGCGTATGTTCGGAGATGTCAAGCTGACGGAGCCGTGGCATAAT
CTAACCCTACGGAGGCTAATAGAGGATGGCATCCTGGAGCGCCGACTCGC
TGAGTTTTTGTGGTCAGATGTTTGGCATCATGTGCTAGCTGTACTGCAGG
AGATCGGTTTGACCTTCCCATTGCCTGACGACCGAGACGGCACCCTCGTT
GTCCCACTGCGTCTTCCAGAGACCCGACCAGCTGATGTTGGCCAAAGTTT
CGCAACAAAGCTCCCCGACGATCAGATATCTCTCTCAGTGACCTGGAAAA
TGTACGACGGCGTTCCTCCCGGAGCCATCGAGAGGATCATGTCTAAGTGC
TGCCATCTTGGGACGGCCGTGGTCTATTGGAGGTTGGGTGTGGTTGCACG
TGTTGACCACGATTACGAGGAATCGCGTCTAAGGCTTGAATACAGCATGG
ATAAGAATGAGCTGGTGGTGGCGGTGTGGGGAGATCTCACCAAGGCAGCT
CCGTGGGCCATCATCTGCTGTGTGTGTACAGTCGTTCGGAAGATGACCCT
GGATTTTCCAGGACTGCGCTGGGATGCGTCCTTGGGCTGCCCAGATCACG
CTGAAAACATCATCGGCATCTCTGAGGTCCAGAGAATGGGTGATGGCTTG
GTAGACAACGGAACCGTCCAGAGAATGGGTGATGGCTTGGTAGACAACGG
AACC
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