mRNA_H-paniculata_contig283.7727.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig283.7727.1
Unique NamemRNA_H-paniculata_contig283.7727.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig283.7727.1 vs. uniprot
Match: D8LU69_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU69_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 6.060e-26
Identity = 91/230 (39.57%), Postives = 116/230 (50.43%), Query Frame = 3 
Query:   36 DDDGVSKYHHDAAQIDLRRISLTKVFGHLGFSFEDVQAA----SEEGASGSCATADDDFNCV-----TSKFIVWIGPSAMSFEDHHEDFHENLRQIPTQWRSSLSSIMYCMTSDGRSVED-----------------------------------TDTAGDGEAKTKVEDGTTTDKYRRLEQQAPLEVLKSVIREK----------HCDSDDGDDEANAAAEAALAMGFM 563
            +D+G+     D AQ D  R SLTKV GHLGF FE+ + A     E G  G  +  D D +       +S+F+ W G SAMSFE+  E+FHE+LRQIP +WRSSLSSIM  M S+G   E                                     D +GDG   T    G T ++ +RLEQQA LE+L+SV+RE              ++DG+ EA AAA AALAMG M
Sbjct:   51 EDEGMGSQDCDPAQFDSWRNSLTKVLGHLGFDFENEEGAPCEEEELGPDGKRSPTDTDKHSRHNSRGSSQFLSWGGTSAMSFEERPEEFHESLRQIPMRWRSSLSSIMTSMASNGGFDEHGGAYANGAGXXXXXXXXXXXXXXXXXXXXXXXNMGMDVSGDGGNVT----GQTGER-KRLEQQASLEMLQSVMRETLESMSGADGHEASTEDGEQEAKAAATAALAMGSM 275
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BLAST of mRNA_H-paniculata_contig283.7727.1 vs. uniprot
Match: A0A6H5JLW3_9PHAE (HSF_DOMAIN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLW3_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 3.680e-25
Identity = 88/221 (39.82%), Postives = 111/221 (50.23%), Query Frame = 3 
Query:   36 DDDGVSKYHHDAAQIDLRRISLTKVFGHLGFSFEDVQAAS-EEGASGSCATADDDFNCVTSKFIVWIGPSAMSFEDHHEDFHENLRQIPTQWRSSLSSIMYCMTSDGRSVED----------------------------------TDTAGDGEAKTKVEDGTTTDKYRRLEQQAPLEVLKSVIREK----------HCDSDDGDDEANAAAEAALAMGFM 563
            +D+G+     D AQ D  R SLTKV GHLGF FE+ +    EE   G         +  +S+F+ W G SAMSFE+  E+FHE+LRQIP +WRSSLSSIM  M S+G   E                                    D  GDG   T    G T ++ +RLEQQA LE+L+SV+RE              ++DG+ EA AAA AALAMG M
Sbjct:  895 EDEGMGSQDCDPAQFDSWRNSLTKVLGHLGFDFENEEGTPCEEEELGPDGKPSRHNSRGSSQFLSWGGTSAMSFEERPEEFHESLRQIPMRWRSSLSSIMTSMASNGGFDEHGGAYANGAGNXXXXXXXXXXXXXXXXXXXXXNMGMDVTGDGGNVT----GQTGERKQRLEQQASLEMLQSVMRETLESMSGADGHEASTEDGEQEAKAAATAALAMGSM 1111
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig283.7727.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LU69_ECTSI6.060e-2639.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JLW3_9PHAE3.680e-2539.82HSF_DOMAIN domain-containing protein n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig283contigH-paniculata_contig283:24880..28677 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1760
Cds size348
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig283.7727.1prot_H-paniculata_contig283.7727.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig283 25507..27510 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929858.643224-UTR-H-paniculata_contig283:24879..249861622929858.643224-UTR-H-paniculata_contig283:24879..24986Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig283 24880..24986 +
1691481042.688543-UTR-H-paniculata_contig283:24879..249861691481042.688543-UTR-H-paniculata_contig283:24879..24986Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig283 24880..24986 +
1622929858.6610935-UTR-H-paniculata_contig283:25368..255061622929858.6610935-UTR-H-paniculata_contig283:25368..25506Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig283 25369..25506 +
1691481042.7007964-UTR-H-paniculata_contig283:25368..255061691481042.7007964-UTR-H-paniculata_contig283:25368..25506Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig283 25369..25506 +
1622929858.8146937-UTR-H-paniculata_contig283:27510..286771622929858.8146937-UTR-H-paniculata_contig283:27510..28677Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig283 27511..28677 +
1691481042.749243-UTR-H-paniculata_contig283:27510..286771691481042.749243-UTR-H-paniculata_contig283:27510..28677Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig283 27511..28677 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929858.7692535-CDS-H-paniculata_contig283:25506..255181622929858.7692535-CDS-H-paniculata_contig283:25506..25518Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig283 25507..25518 +
1691481042.7150083-CDS-H-paniculata_contig283:25506..255181691481042.7150083-CDS-H-paniculata_contig283:25506..25518Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig283 25507..25518 +
1622929858.7848055-CDS-H-paniculata_contig283:26481..266611622929858.7848055-CDS-H-paniculata_contig283:26481..26661Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig283 26482..26661 +
1691481042.724637-CDS-H-paniculata_contig283:26481..266611691481042.724637-CDS-H-paniculata_contig283:26481..26661Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig283 26482..26661 +
1622929858.8004277-CDS-H-paniculata_contig283:27354..275101622929858.8004277-CDS-H-paniculata_contig283:27354..27510Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig283 27355..27510 +
1691481042.736547-CDS-H-paniculata_contig283:27354..275101691481042.736547-CDS-H-paniculata_contig283:27354..27510Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig283 27355..27510 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig283.7727.1

>prot_H-paniculata_contig283.7727.1 ID=prot_H-paniculata_contig283.7727.1|Name=mRNA_H-paniculata_contig283.7727.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=116bp
MSFEDHHEDFHENLRQIPTQWRSSLSSIMYCMTSDGRSVEDTDTAGDGEA
KTKVEDGTTTDKYRRLEQQAPLEVLKSVIREKHCDSDDGDDEANAAAEAA
LAMGFMRFSQVRNAT*
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mRNA from alignment at H-paniculata_contig283:24880..28677+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig283.7727.1 ID=mRNA_H-paniculata_contig283.7727.1|Name=mRNA_H-paniculata_contig283.7727.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3798bp|location=Sequence derived from alignment at H-paniculata_contig283:24880..28677+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATTACCTGTTGAGGAAGTGATCGCTTGGTTTGAGGACGATGATGGTGTG
AGCAAATATCATCACGACGCCGCACAGATCGACCTCAGGCGCATTTCCCT
GACGAAGGTACAGATCGACCTCAGGCGCATTTCCCTGACGAAGGTACAGA
TCGACTGCAGGCATATCTCCCTGACGAAGGTCCAAGACGTCATGTTTTGT
GCACTGATTCGTTTTGGTCTGATTGTGTTGTACTTCCTTTATAAAGCGAA
ATGTTGCAGGACATGAGCGATACACTTGCAATCAACCGTAACGCGTAGGT
AACGGTAGGTTGCTTCTTTTCTTCTTGATGCAATGTCTCCCAGGTCCATG
CCAAACACCGCCAGACTTTTGAGATGCTATCAATCGCCATTCGAACGTAC
TCACTACTTGTAGTGTCCAAGTACGGTTAGTTTGTGCTGTATTTTAGTTA
GTCCTTGGATCACAACCGTCGCCCCAAACTGATTCGCAGGTGTTCGGACA
TCTGGGTTTTAGCTTCGAGGATGTCCAGGCTGCGTCAGAAGAGGGGGCAT
CGGGAAGTTGCGCAACCGCCGATGACGATTTCAACTGTGTCACTTCTAAA
TTCATCGTTTGGATTGGCCCCTCTGCCATGTCTTTTGAGGTAACGCGTAA
TCGAAATAGGCTGGTTGATCTGGCACCCCGACCCAAAGCATACCATTTCG
TTACCCTGAGCGGATATTTTTATAATCGAAGGACCTTCATTGTGTACGTC
GCTTAGATGCCACTCGAGTGTGACTGGTGGGAGCAACAGGCAGGATCGGA
AAAGTAGCTTGCTGCTGGCTCCACAAGATCCCATTCCCTGTGCATGTATT
TTTCAAGGCACGTTTTATGCTCAACCTTGGCAGATGACGTTCAACCGTTC
ATGTTTTTGTGAGAATACCGCACTGCTTGCGGTATTGAGCCCCCGGCATA
TTTCGGTCATAAGCTCCACTTTGCCCTCTGTAATTCGTACAATCGTGTTG
GTCTGGAAGAATCCAAATACCTAGCCGCGGATGTTGACTTTGGTTAAATG
AGCTTATGGCCGATCTAATGAGCCGTGCAGAGATTTTGATTATTCGGTGG
CCGATATGACACGAGCTGATCTCTGCCTATTCTTGCTCTACGCCAACTTG
AATTTTAAATGACCCAATCGTCAACAAGAAACGACCGTCTTGTTAGCCTC
CGATACGCTGACAAGCACGTCTAGAGCTGGTTGAGCATTTTGTGAACATT
GCTAAATCGAATGGACAGGAGTGGGTACTTCGTTCTATGTGTTTGCTCAT
TCTGAAACTCGGGCGAATGGTTTTTAATTTCCGTGGCGCATACGCGTAGT
ATTCAAGTATTCGTATTGTACAGGAGGTGGAACATTTGTGTCACTACTCG
CTAGTAGTCGTTAGGAAAGCCATATTTAGGTTATTACGAGTTACGAGTTA
CGAGGTCGGTTTCCTCAACCGTTAAACGGGCGAGCCGGTTTAATGTTAAT
TTCTCCTTGAGGTTCGGCGCTCAAGTTTATCGAGGCGCTGTGCTAAGCTC
CTCGGCATCATGGAAGGACTTTTTTTATTCGTCTTCTTTGAAATTGTGTC
AGGACCATCACGAGGATTTCCACGAGAACTTACGACAAATACCAACACAA
TGGCGCTCCTCTTTGTCGAGTATCATGTATTGCATGACCTCTGACGGTCG
AAGTGTGGAAGATACCGACACCGCCGGTGATGGTGAAGCGAAGACCAAGG
TGGAAGATGGAACAACAACCGATAAGTACAGGGTGCGTACTGTGTGTATT
GCGTCAAGTATCGAGCTCAGTACACATCCCACTACAGCGATCGCTTATTG
TCCCTGGGTGATTGTTTTCGTTGAAAGGTCGAATTGTAAACATAATGCAG
CTTGTGGTAACGAAAGAAGTCTCAGCGGAACTGATATAATGAGTAAATCC
CACAGGTACGAGCCGCTTTCGGTATGTCCATTCTATTGAAACTGTGCGGG
CAAAAAGTGGCACAATATTTCGGAACTTGGTCGTACTGACGATTGGCCGG
GGCCAATACAGAGTCCGACCGGGGCCAGGTAGGGTCATCGTCGTTTTGCA
TCAGGAATGTATCCAGTGTTGTTTTCGCCTCTAAAGACAATGTCCACCTC
CAGGATGACCTTTGATGTTTTCAACGCGACTTTTTTAGTCAGAAGGCTAC
ATGACCCCGGCGGAGTCAACCGCGTTTACAATGCGTACGATATCCTCAGA
GGTCCTAGACCAGGCCAAAACAGCACATGGTGGGGCCTTCGCGCACTCCA
CAAGGCGTTTACTCGATTTCACACAGCTAACCACCCTCTTGATATAATCC
TCTTTGGAATCTCCAAATTTTGTGCGTTACATGGGTGAAGAAATTTATTT
CGGTCAATATCACGACGGGCTTGATAAACTTCTTGCAACGTCCTTACCCA
AACACAAATGCGTCGCCGTTCGCAGCGCCTTGAGCAGCAGGCCCCCTTGG
AGGTGCTGAAATCTGTGATTCGGGAAAAGCATTGCGATTCAGACGACGGC
GATGATGAAGCCAACGCTGCGGCTGAGGCTGCTCTGGCCATGGGGTTCAT
GCGCTTCTCCCAAGTGCGCAACGCAACATAGCGCTTACAATTACTGTGTG
CTGCGGCTGAGGACACCGATTTGTTCAAGCAGCGGCAGATAAGAAGGTAC
AACCGTTACAGGATGCGCATAATACCTCCTCGAGATGTTCCTGAAAGCTT
GGTTATATCCCCTTCGGTGTTTCAGGGAGCGGGGCATAATTCAAAAACAT
GAGTCATACTGAAGAAGGTTCAGGATGCGCTACCTGCCAAAGGAGAGGGC
GGCAAGGGAAGCGGGATAGGAGGGCAGGCATAGGAGAAATGTAGGGTGGG
TCGGCACCTCCCGCTTTCTGGCCTTCACCGGGTACCCGTTTTGTTTCTTT
TGGACGGAGCACCGACATTGAGTTGGCGTTGTTTTTGCGGCCGGTTGCGA
CGCTGTAAGGTGCGGGTTCGGGAGAGGAGAGCCAAATGACTGTCCAGACG
TGGGCGCAATGGGGAAAGCCAAGTATTGGCAACGCAAATATTGATGTTGA
CGAATCTTTCCGTGCGTTGCTACTTTACTCTGGAAAACGAGTAATGTGAC
AACAAATGGGCGCGGTATCAACAACTCGTGTTCCATTTTATGTCCAGTTT
ACGTATTGGATTATGTCCAGTTTACACATTGGTGTAGTTGGTTTGCTACC
TCATGGGTGAGATGAAAGTGTCAAGACCTTCAACGGAACCTTGCAATGGC
AAGCCCCATACATGCTGTTGTCTCCTAGGCATTGTGCTTGCTGCATCGTG
TTCCAAGTCACCAAAGTGGAGATTGTAGCACAGCGACATTCGAACCACTT
TCTGGAGTTTCAGTTTGCTGTGTGTTTTTGTTTTTCGTGTATCAGATTTC
GTTGGCATACATACACGTATGACACAGAGCGTGCTGCGAACAAATAGAAA
ATGACGAGCAAGATTATGTAAGGTGTGAGGGTGTTGCGTGAAGTCCGCAA
CGTGTCGCTGCGATCCGCACAGCAACAGGTTGTGATTCTGGAAGCGAACT
CGCAATTCGTCCGAGTATCCAATACGTCATGCTGATATGCGAATGCCCTG
AGCGCATGTTGGGTTCACCCGTCTAAGATGACAACAAAGCGATGAACTCG
TTGTAACTACCACTGCTTGCTAATGAGGTAATGCATGAGGGAGCTCAGTG
GTAATTCAATTGCGGAATTTAAGCAAGCATTTAATTTTTGCAAACCCA
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Coding sequence (CDS) from alignment at H-paniculata_contig283:24880..28677+

>mRNA_H-paniculata_contig283.7727.1 ID=mRNA_H-paniculata_contig283.7727.1|Name=mRNA_H-paniculata_contig283.7727.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at H-paniculata_contig283:24880..28677+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTTTTGAGATGTCTTTTGAGGACCATCACGAGGATTTCCACGAGAA
CTTACGACAAATACCAACACAATGGCGCTCCTCTTTGTCGAGTATCATGT
ATTGCATGACCTCTGACGGTCGAAGTGTGGAAGATACCGACACCGCCGGT
GATGGTGAAGCGAAGACCAAGGTGGAAGATGGAACAACAACCGATAAGTA
CAGGGACCATCACGAGGATTTCCACGAGAACTTACGACAAATACCAACAC
AATGGCGCTCCTCTTTGTCGAGTATCATGTATTGCATGACCTCTGACGGT
CGAAGTGTGGAAGATACCGACACCGCCGGTGATGGTGAAGCGAAGACCAA
GGTGGAAGATGGAACAACAACCGATAAGTACAGGCGCCTTGAGCAGCAGG
CCCCCTTGGAGGTGCTGAAATCTGTGATTCGGGAAAAGCATTGCGATTCA
GACGACGGCGATGATGAAGCCAACGCTGCGGCTGAGGCTGCTCTGGCCAT
GGGGTTCATGCGCTTCTCCCAAGTGCGCAACGCAACATAGCGCCTTGAGC
AGCAGGCCCCCTTGGAGGTGCTGAAATCTGTGATTCGGGAAAAGCATTGC
GATTCAGACGACGGCGATGATGAAGCCAACGCTGCGGCTGAGGCTGCTCT
GGCCATGGGGTTCATGCGCTTCTCCCAAGTGCGCAACGCAACATAG
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