mRNA_H-paniculata_contig28291.7724.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig28291.7724.1
Unique NamemRNA_H-paniculata_contig28291.7724.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig28291.7724.1 vs. uniprot
Match: D8LDU1_ECTSI (Carnitine/acylcarnitine carrier protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU1_ECTSI)

HSP 1 Score: 171 bits (432), Expect = 5.040e-48
Identity = 80/104 (76.92%), Postives = 90/104 (86.54%), Query Frame = 3 
Query:    3 GTKKALTKPGEVPSLGKCFLAGASAGAGFWGVYYPLETIKTRMQGDHTDPAKRAYSGVMDCFNKTLKEGGMKAFYKGYIPSITRAMPVNGAIFTGFTAASRALS 314
            GTK+A TKPGE PSL  CF  GA+AGAGFWGV+YPLET+KTRMQGDH DP+KR YSG++DCF KT+ EGG  AFYKG+ PSITRAMPVNGAIFTGFTAA RAL+
Sbjct:  184 GTKQAFTKPGEQPSLTTCFAGGAAAGAGFWGVWYPLETLKTRMQGDHVDPSKRLYSGLVDCFKKTMAEGGA-AFYKGFTPSITRAMPVNGAIFTGFTAAQRALA 286
[Close]
BLAST of mRNA_H-paniculata_contig28291.7724.1 vs. uniprot
Match: A0A835Z5H4_9STRA (Carnitine/acylcarnitine carrier protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5H4_9STRA)

HSP 1 Score: 151 bits (382), Expect = 1.560e-40
Identity = 70/102 (68.63%), Postives = 82/102 (80.39%), Query Frame = 3 
Query:    6 TKKALTKPGEVPSLGKCFLAGASAGAGFWGVYYPLETIKTRMQGDHTDPAKRAYSGVMDCFNKTLKEGGMKAFYKGYIPSITRAMPVNGAIFTGFTAASRAL 311
            TK ALTK GE P+L  CF+AG +AG GFWG++YPLETIKTR+Q D  +PA R Y G+MD F KT  EGG+KAFYKGY+PSI RA+PVN AIFTGFTAA RA+
Sbjct:  185 TKAALTKKGEEPTLATCFVAGGAAGFGFWGLWYPLETIKTRIQSDAPEPALRKYKGIMDAFAKTQAEGGLKAFYKGYVPSIARAVPVNAAIFTGFTAAQRAM 286
[Close]
BLAST of mRNA_H-paniculata_contig28291.7724.1 vs. uniprot
Match: A0A6B2LCD6_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LCD6_9EUKA)

HSP 1 Score: 110 bits (274), Expect = 8.540e-25
Identity = 50/99 (50.51%), Postives = 67/99 (67.68%), Query Frame = 3 
Query:    9 KKALTKPGEVPSLGKCFLAGASAGAGFWGVYYPLETIKTRMQGDHTDPAKRAYSGVMDCFNKTLKEGGMKAFYKGYIPSITRAMPVNGAIFTGFTAASR 305
            K+ LTK GE P+L   FLAG +AG GFWG++YPL+ IKTR+Q D T P  R YS  +DC  K +K  G  AF++G++PSI RA+P+N ++F    A  R
Sbjct:  180 KQFLTKKGEKPTLSTIFLAGGAAGFGFWGIWYPLDIIKTRLQTDATLPQDRKYSSTLDCVVKMMKTEGGAAFWRGWVPSIVRAIPINASVFLAVNATKR 278
[Close]
BLAST of mRNA_H-paniculata_contig28291.7724.1 vs. uniprot
Match: A0A2R5GTK5_9STRA (Mitochondrial substrate carrier family protein G n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GTK5_9STRA)

HSP 1 Score: 109 bits (272), Expect = 2.130e-24
Identity = 54/92 (58.70%), Postives = 64/92 (69.57%), Query Frame = 3 
Query:   18 LTKPGEVPSLGKCFLAG----ASAGAGFWGVYYPLETIKTRMQGDHTDPAKRAYSGVMDCFNKTLKEGGMKAFYKGYIPSITRAMPVNGAIF 281
            +  PGE  S  + FL G    A AG  FWG+ YPLETIKTRMQ DH    KR Y  V+DC +KT  EGG++AF+KGYIPS+TRA+PVN AIF
Sbjct:  190 VNTPGEPASPQQVFLGGLVGGACAGGMFWGLLYPLETIKTRMQSDHIVKEKRLYKSVLDCASKTYAEGGVQAFFKGYIPSLTRAVPVNAAIF 281
[Close]
BLAST of mRNA_H-paniculata_contig28291.7724.1 vs. uniprot
Match: A0A0L0DS92_THETB (Substrate carrier family protein G n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DS92_THETB)

HSP 1 Score: 97.1 bits (240), Expect = 6.050e-20
Identity = 46/100 (46.00%), Postives = 61/100 (61.00%), Query Frame = 3 
Query:   12 KALTKPGEVPSLGKCFLAGASAGAGFWGVYYPLETIKTRMQGDHTDPAKRAYSGVMDCFNKTLKEGGMKAFYKGYIPSITRAMPVNGAIFTGFTAASRAL 311
            K LT P E P++   FLAG+ AG  FW   YPLE +KT MQ   ++PA R Y+  +      L + G+  FY+GY+P++ RA+PVNGAIF GF    R L
Sbjct:  173 KTLTAPDERPTVLTSFLAGSLAGGMFWAPIYPLEMVKTVMQSQPSEPAARKYASTIAATRGILADSGIAGFYRGYLPAVIRAVPVNGAIFAGFAFTKRIL 272
[Close]
BLAST of mRNA_H-paniculata_contig28291.7724.1 vs. uniprot
Match: A0A5E8BIR2_9ASCO (Uncharacterized protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8BIR2_9ASCO)

HSP 1 Score: 85.9 bits (211), Expect = 1.030e-15
Identity = 39/93 (41.94%), Postives = 55/93 (59.14%), Query Frame = 3 
Query:   33 EVPSLGKCFLAGASAGAGFWGVYYPLETIKTRMQGDHTDPAKRAYSGVMDCFNKTLKEGGMKAFYKGYIPSITRAMPVNGAIFTGFTAASRAL 311
            ++P    C L GA AG   W   YP++ +K++MQ D  DPAK+ Y G++DCF K     G+K F++G++P+I RA PVN   F  F    R L
Sbjct:  215 DIPGWRLC-LYGACAGYAMWFTSYPIDVVKSKMQTDALDPAKQQYKGMIDCFQKIYATNGIKGFFRGFLPTILRAAPVNACTFYAFELTIRYL 306
[Close]
BLAST of mRNA_H-paniculata_contig28291.7724.1 vs. uniprot
Match: A0A1E3PYY1_LIPST (Uncharacterized protein n=1 Tax=Lipomyces starkeyi NRRL Y-11557 TaxID=675824 RepID=A0A1E3PYY1_LIPST)

HSP 1 Score: 83.2 bits (204), Expect = 9.970e-15
Identity = 38/93 (40.86%), Postives = 55/93 (59.14%), Query Frame = 3 
Query:   33 EVPSLGKCFLAGASAGAGFWGVYYPLETIKTRMQGDHTDPAKRAYSGVMDCFNKTLKEGGMKAFYKGYIPSITRAMPVNGAIFTGFTAASRAL 311
            ++P    C   G  AG G W   YP + IK++MQ D  D  KR ++  +DC  KTL+  G+K F++G++P+I RA PVN + F  F  A RA+
Sbjct:  219 DIPGWRLCVYGGC-AGYGVWLSAYPFDVIKSKMQTDSIDATKRQFNSTIDCARKTLQASGVKGFFRGFVPTILRAAPVNASTFYAFELAMRAI 310
[Close]
BLAST of mRNA_H-paniculata_contig28291.7724.1 vs. uniprot
Match: A0A1Y2HKQ8_9FUNG (Putative YMC1-protein of the mitochondrial carrier family n=1 Tax=Catenaria anguillulae PL171 TaxID=765915 RepID=A0A1Y2HKQ8_9FUNG)

HSP 1 Score: 82.8 bits (203), Expect = 1.280e-14
Identity = 38/93 (40.86%), Postives = 55/93 (59.14%), Query Frame = 3 
Query:   33 EVPSLGKCFLAGASAGAGFWGVYYPLETIKTRMQGDHTDPAKRAYSGVMDCFNKTLKEGGMKAFYKGYIPSITRAMPVNGAIFTGFTAASRAL 311
            E+P+  K    GA +G   W   +P++ IK+++Q D  DP  R YS  +DCF +TLK  G++  Y+G++P + RA PVN   F GF AA   L
Sbjct:  211 ELPTW-KVMTYGALSGYSLWISVFPIDVIKSKLQTDAFDPTNRKYSSALDCFRQTLKAEGIRGLYRGFVPCMLRAAPVNAITFLGFEAAMNVL 302
[Close]
BLAST of mRNA_H-paniculata_contig28291.7724.1 vs. uniprot
Match: A0A8H7PNJ7_MORIS (Uncharacterized protein n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7PNJ7_MORIS)

HSP 1 Score: 82.4 bits (202), Expect = 1.590e-14
Identity = 39/94 (41.49%), Postives = 55/94 (58.51%), Query Frame = 3 
Query:   33 EVPSLGKCFLAGASAGAGFWGVYYPLETIKTRMQGDHTDPAKRAYSGVMDCFNKTLKEGGMKAFYKGYIPSITRAMPVNGAIFTGFTAASRALS 314
            E+P+   C L GA  G   WG+ YPL+ IK+++Q D+ D +KR Y   +DC  + +   G K F++G+ P + RA PVN   F GF  A R LS
Sbjct:  205 EIPTTQIC-LYGALGGYAMWGMMYPLDVIKSKLQTDNLDVSKRQYRSALDCARQVMATEGPKGFFRGFGPCMLRAAPVNAVTFLGFETAMRFLS 297
[Close]
BLAST of mRNA_H-paniculata_contig28291.7724.1 vs. uniprot
Match: A0A0J9XBB8_GEOCN (Similar to Saccharomyces cerevisiae YPR058W YMC1 Putative mitochondrial inner membrane transporter n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9XBB8_GEOCN)

HSP 1 Score: 81.6 bits (200), Expect = 3.400e-14
Identity = 38/93 (40.86%), Postives = 53/93 (56.99%), Query Frame = 3 
Query:   33 EVPSLGKCFLAGASAGAGFWGVYYPLETIKTRMQGDHTDPAKRAYSGVMDCFNKTLKEGGMKAFYKGYIPSITRAMPVNGAIFTGFTAASRAL 311
            ++P    C L GASAG   W   YP++ +K++MQ D  DP  + Y   +DCF K   + G+K F+KG++P+I RA PVN   F  F    R L
Sbjct:  216 DIPGWKLC-LFGASAGYAMWFTSYPIDIVKSKMQTDALDPKGQQYKSTLDCFRKIYVQNGIKGFFKGFLPTILRAAPVNACTFYTFELVIRYL 307
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28291.7724.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDU1_ECTSI5.040e-4876.92Carnitine/acylcarnitine carrier protein n=1 Tax=Ec... [more]
A0A835Z5H4_9STRA1.560e-4068.63Carnitine/acylcarnitine carrier protein n=1 Tax=Tr... [more]
A0A6B2LCD6_9EUKA8.540e-2550.51Uncharacterized protein n=1 Tax=Arcella intermedia... [more]
A0A2R5GTK5_9STRA2.130e-2458.70Mitochondrial substrate carrier family protein G n... [more]
A0A0L0DS92_THETB6.050e-2046.00Substrate carrier family protein G n=1 Tax=Thecamo... [more]
A0A5E8BIR2_9ASCO1.030e-1541.94Uncharacterized protein n=1 Tax=Saprochaete ingens... [more]
A0A1E3PYY1_LIPST9.970e-1540.86Uncharacterized protein n=1 Tax=Lipomyces starkeyi... [more]
A0A1Y2HKQ8_9FUNG1.280e-1440.86Putative YMC1-protein of the mitochondrial carrier... [more]
A0A8H7PNJ7_MORIS1.590e-1441.49Uncharacterized protein n=1 Tax=Mortierella isabel... [more]
A0A0J9XBB8_GEOCN3.400e-1440.86Similar to Saccharomyces cerevisiae YPR058W YMC1 P... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig28291contigH-paniculata_contig28291:955..1834 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.8
Seed ortholog evalue5.9e-20
Seed eggNOG ortholog2880.D8LDU1
KEGG koko:K15109
KEGG TC2.A.29.8
KEGG Pathwayko04714,map04714
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006810,GO:0006839,GO:0008150,GO:0016020,GO:0016021,GO:0019866,GO:0022857,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0051179,GO:0051234,GO:0055085
EggNOG free text desc.mitochondrial transport
EggNOG OGsKOG0758@1,KOG0758@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Exons1
Model size880
Cds size189
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig28291.7724.1prot_H-paniculata_contig28291.7724.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig28291 1083..1271 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929858.4516156-UTR-H-paniculata_contig28291:954..10821622929858.4516156-UTR-H-paniculata_contig28291:954..1082Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28291 955..1082 +
1691481042.6072617-UTR-H-paniculata_contig28291:954..10821691481042.6072617-UTR-H-paniculata_contig28291:954..1082Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28291 955..1082 +
1622929858.497702-UTR-H-paniculata_contig28291:1271..18341622929858.497702-UTR-H-paniculata_contig28291:1271..1834Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28291 1272..1834 +
1691481042.6293452-UTR-H-paniculata_contig28291:1271..18341691481042.6293452-UTR-H-paniculata_contig28291:1271..1834Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28291 1272..1834 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929858.471611-CDS-H-paniculata_contig28291:1082..12711622929858.471611-CDS-H-paniculata_contig28291:1082..1271Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28291 1083..1271 +
1691481042.61935-CDS-H-paniculata_contig28291:1082..12711691481042.61935-CDS-H-paniculata_contig28291:1082..1271Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28291 1083..1271 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig28291.7724.1

>prot_H-paniculata_contig28291.7724.1 ID=prot_H-paniculata_contig28291.7724.1|Name=mRNA_H-paniculata_contig28291.7724.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=63bp
MQGDHTDPAKRAYSGVMDCFNKTLKEGGMKAFYKGYIPSITRAMPVNGAI
FTGFTAASRALS*
back to top

mRNA from alignment at H-paniculata_contig28291:955..1834+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig28291.7724.1 ID=mRNA_H-paniculata_contig28291.7724.1|Name=mRNA_H-paniculata_contig28291.7724.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=880bp|location=Sequence derived from alignment at H-paniculata_contig28291:955..1834+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGGAACCAAAAAGGCCTTGACGAAGCCAGGAGAGGTGCCGTCCCTCGGC
AAGTGCTTCCTCGCGGGAGCGTCTGCAGGGGCGGGGTTCTGGGGAGTGTA
CTACCCTCTTGAAACGATCAAGACTCGCATGCAGGGGGATCACACGGACC
CCGCGAAACGGGCGTACTCTGGAGTGATGGACTGCTTCAACAAAACCTTG
AAGGAGGGCGGTATGAAAGCCTTTTACAAGGGATACATTCCCTCGATCAC
GAGAGCCATGCCCGTCAACGGAGCTATCTTCACCGGCTTCACTGCGGCGT
CACGGGCTCTGAGTTGAACCCCCTTCCGTTTCTCCTCATACACGAGAAGA
ATAAATTTTTGGTGGATATTTACGGCGTCTGCGCACACAAAGTTTGTCTC
TAGATATTCTTGGTTGCGGTCCGTCCTGCAGTGACTTTTGCGGTTGTCAC
ATGTAGCTTGAGAAGTAACGAATCTCGGGGATGTCTGCCTAACTTTTTTA
TTCGGCGTACGCGCGGACTGCTTGAAGTGCGGGGGAATGCATCAAGAGCG
TAATGAAAGAAAGGCATGCGTCTTTCATTTTTAACATCATCATGACAACA
TGATCAAATCCTCCATGGTGGTTTTGTCTCTTTTTTGTGGCATGTCGCAT
GCGTGTGCGAGTGTGATGGTTAATCCGCGAGATCCGTTGTGGCTTCCATT
TGTCGATTTTTGTTTTGGTGTGGACTGAGCCTTGACCCCATGTTCATTGG
GTGAGATTTCTCAGATGAGCCAATGATAAGCCGCCGCGGCACTGTACGAC
GGTAACGTGAAAATTACGTTAGAAGAGTAAGAAACGTTGTGCTCAAAAAC
ACCCTACCGATTTTTTTTTGCTAGGGAGGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig28291:955..1834+

>mRNA_H-paniculata_contig28291.7724.1 ID=mRNA_H-paniculata_contig28291.7724.1|Name=mRNA_H-paniculata_contig28291.7724.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=378bp|location=Sequence derived from alignment at H-paniculata_contig28291:955..1834+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGGGGGATCACACGGACCCCGCGAAACGGGCGTACTCTGGAGTGAT
GGACTGCTTCAACAAAACCTTGAAGGAGGGCGGTATGAAAGCCTTTTACA
AGGGATACATTCCCTCGATCACGAGAGCCATGCCCGTCAACGGAGCTATC
TTCACCGGCTTCACTGCGGCGTCACGGGCTCTGAGTTGAATGCAGGGGGA
TCACACGGACCCCGCGAAACGGGCGTACTCTGGAGTGATGGACTGCTTCA
ACAAAACCTTGAAGGAGGGCGGTATGAAAGCCTTTTACAAGGGATACATT
CCCTCGATCACGAGAGCCATGCCCGTCAACGGAGCTATCTTCACCGGCTT
CACTGCGGCGTCACGGGCTCTGAGTTGA
back to top