mRNA_H-paniculata_contig28284.7722.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig28284.7722.1
Unique NamemRNA_H-paniculata_contig28284.7722.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig28284.7722.1 vs. uniprot
Match: D7G1B0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1B0_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 6.440e-22
Identity = 44/69 (63.77%), Postives = 54/69 (78.26%), Query Frame = 1 
Query:    1 LSEQLDFTYTISAPPDGTGTSETIEMVRNGTKDLAGSWITITEERCNYVSFTYPYYDVGIALVYKTVND 207
            L++ + FTY++ APP+GT T ETIEMVRNG+ D+ GSWITIT ER  YVSFTYPY+D+GIA VY    D
Sbjct:  400 LADVVGFTYSLRAPPEGTTTPETIEMVRNGSADMTGSWITITSERAEYVSFTYPYFDLGIAFVYLPTID 468
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BLAST of mRNA_H-paniculata_contig28284.7722.1 vs. uniprot
Match: A0A6H5JES6_9PHAE (PBPe domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JES6_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 1.360e-21
Identity = 43/69 (62.32%), Postives = 54/69 (78.26%), Query Frame = 1 
Query:    1 LSEQLDFTYTISAPPDGTGTSETIEMVRNGTKDLAGSWITITEERCNYVSFTYPYYDVGIALVYKTVND 207
            L++ + FTY++ APP+GT T +TIEMVRNG+ D+ GSWITIT ER  YVSFTYPY+D+GIA VY    D
Sbjct:  182 LADVVGFTYSLRAPPEGTTTPDTIEMVRNGSADMTGSWITITSERAEYVSFTYPYFDLGIAFVYLPTID 250
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28284.7722.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1B0_ECTSI6.440e-2263.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JES6_9PHAE1.360e-2162.32PBPe domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig28284contigH-paniculata_contig28284:176..382 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score98.6
Seed ortholog evalue1.2e-18
Seed eggNOG ortholog2880.D7G1B0
KEGG koko:K05313
KEGG TC1.A.10.1.14,1.A.10.1.15,1.A.10.1.16,1.A.10.1.17
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ionotropic glutamate receptor activity
EggNOG OGsKOG1052@1,KOG1052@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04040
Exons1
Model size207
Cds size207
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929858.1752415-CDS-H-paniculata_contig28284:175..3821622929858.1752415-CDS-H-paniculata_contig28284:175..382Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28284 176..382 -
1691481042.4530087-CDS-H-paniculata_contig28284:175..3821691481042.4530087-CDS-H-paniculata_contig28284:175..382Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28284 176..382 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig28284.7722.1prot_H-paniculata_contig28284.7722.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig28284 176..382 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig28284.7722.1

>prot_H-paniculata_contig28284.7722.1 ID=prot_H-paniculata_contig28284.7722.1|Name=mRNA_H-paniculata_contig28284.7722.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=69bp
LSEQLDFTYTISAPPDGTGTSETIEMVRNGTKDLAGSWITITEERCNYVS
FTYPYYDVGIALVYKTVND
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mRNA from alignment at H-paniculata_contig28284:176..382-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig28284.7722.1 ID=mRNA_H-paniculata_contig28284.7722.1|Name=mRNA_H-paniculata_contig28284.7722.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=207bp|location=Sequence derived from alignment at H-paniculata_contig28284:176..382- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGTCGGAACAGCTTGATTTCACGTACACGATTTCGGCTCCTCCAGACGG
AACGGGGACGTCGGAAACGATAGAGATGGTGCGAAACGGCACGAAAGACT
TGGCCGGCAGTTGGATTACGATCACGGAGGAGCGCTGCAACTACGTGTCG
TTCACCTACCCTTACTATGACGTTGGCATCGCGCTGGTCTATAAGACCGT
CAATGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig28284:176..382-

>mRNA_H-paniculata_contig28284.7722.1 ID=mRNA_H-paniculata_contig28284.7722.1|Name=mRNA_H-paniculata_contig28284.7722.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=414bp|location=Sequence derived from alignment at H-paniculata_contig28284:176..382- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGTCGGAACAGCTTGATTTCACGTACACGATTTCGGCTCCTCCAGACGG
AACGGGGACGTCGGAAACGATAGAGATGGTGCGAAACGGCACGAAAGACT
TGGCCGGCAGTTGGATTACGATCACGGAGGAGCGCTGCAACTACGTGTCG
TTCACCTACCCTTACTATGACGTTGGCATCGCGCTGGTCTATAAGACCGT
CAATGACTTGTCGGAACAGCTTGATTTCACGTACACGATTTCGGCTCCTC
CAGACGGAACGGGGACGTCGGAAACGATAGAGATGGTGCGAAACGGCACG
AAAGACTTGGCCGGCAGTTGGATTACGATCACGGAGGAGCGCTGCAACTA
CGTGTCGTTCACCTACCCTTACTATGACGTTGGCATCGCGCTGGTCTATA
AGACCGTCAATGAC
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