mRNA_H-paniculata_contig28254.7718.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig28254.7718.1
Unique NamemRNA_H-paniculata_contig28254.7718.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28254.7718.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig28254contigH-paniculata_contig28254:437..1724 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size190
Cds size189
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig28254.7718.1prot_H-paniculata_contig28254.7718.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig28254 437..1724 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929857.6459835-CDS-H-paniculata_contig28254:436..4731622929857.6459835-CDS-H-paniculata_contig28254:436..473Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28254 437..473 -
1691481042.2278252-CDS-H-paniculata_contig28254:436..4731691481042.2278252-CDS-H-paniculata_contig28254:436..473Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28254 437..473 -
1622929857.6613548-CDS-H-paniculata_contig28254:1137..12221622929857.6613548-CDS-H-paniculata_contig28254:1137..1222Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28254 1138..1222 -
1691481042.2372959-CDS-H-paniculata_contig28254:1137..12221691481042.2372959-CDS-H-paniculata_contig28254:1137..1222Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28254 1138..1222 -
1622929857.6824253-CDS-H-paniculata_contig28254:1657..17241622929857.6824253-CDS-H-paniculata_contig28254:1657..1724Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28254 1658..1724 -
1691481042.24842-CDS-H-paniculata_contig28254:1657..17241691481042.24842-CDS-H-paniculata_contig28254:1657..1724Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28254 1658..1724 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig28254.7718.1

>prot_H-paniculata_contig28254.7718.1 ID=prot_H-paniculata_contig28254.7718.1|Name=mRNA_H-paniculata_contig28254.7718.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=63bp
MYGRDDLFEVFRAIKPFSLLKAYPFYENAWWAKVGYTSGRMKTSQNIYHS
RYHDGYSACTDDE
back to top

mRNA from alignment at H-paniculata_contig28254:437..1724-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig28254.7718.1 ID=mRNA_H-paniculata_contig28254.7718.1|Name=mRNA_H-paniculata_contig28254.7718.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1288bp|location=Sequence derived from alignment at H-paniculata_contig28254:437..1724- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTACGGGCGTGATGACCTTTTTGAAGTCTTCCGGGCGATCAAGCCTTT
TAGCTTGTTGAAAGCTTGTGAGTGATCTTGGTCTGTCTTCATTACCCCGC
ATACAGACACCGGGTGCGGGTTTCTGGTTGTGTGCGGGTTATTATTTCAG
TGCGAACTAAGTTGCGGAAATGTCGCAGGGCGATATTGTGTGTCACGTCC
AAATGTCTGGACGTTTCTTTATCGGGCCGCGTATAGTGTTTGAACATGTC
ATCGTCGTCATCCGTATGTGACTTTTGCGGTAAATATCGCATGATTGCGT
CGAGGGTAAAGAGCTGAACTTGACCACTTCTAGTGGAATGTTGACTGCAT
ATCAGTAACGTCAGCTGTTGAGAAGATTTACAACACTGCGAAACATTTTT
GACGGAGGAGCGTCTTGATACACCACATGATCGTCGTATAAGGTAATACC
GCCTTCTCGTACCCGACCTTATCTGCGTGTTCCCGTGTCTTGATTGCGAA
AGATCCTTTCTACGAAAACGCTTGGTGGGCGAAGGTCGGGTACACGAGTG
GCAGAATGAAGACTTCGCAGAACATCTATCACAGCAGGTAGGTATACAGG
AAGTGAGGACATGCCTGACTTAACACTGGCATACATTTGTCGATGTGACT
ATTGTCGTGAATGGTGTTGCCCTCGTTCCCTGTACCCACATGCTACTACG
ATTTCGTCGCACTTTGTTTTTGTAGCTTCGAAGACAATGTGCAGCACACT
CATCACATTAGAACACATGTTGTAAAGGAAGACCGTGTTTTAACAGGAAG
AAAAATGACCGGTAATACTGGGTAACGCGTTTCCAAGTGGATATATTCTT
ACACGCCGTCGCCTGGTACCTGCGGTCAACTTGCGCCACTATTACTTCTC
ATCGTAACGTCATTATCACGCGAAAAATACACATCGTCCTACGAAACCAT
GTTTTACCGTCGACAAGCTTAACGGCATTCTTTCGTAGACATTCTAATCT
GTCCAGGTCATAAGAAACATCTTTTCTTCCCTATACTCGCAGCGGTTTCG
ATTTTGCTGTTCACTGTAAGTAACTCCGATTTCGATAAGGTGGGTACGAT
GAAGGTACTATTGTACTTGATATTGTGAAAAGCGTAAAGGCGGCTTCATT
TGTGAGTGAAGGGTCGGAAGTCAACTTAATCCCCCCGCATTTCCCCCCCT
CCCCCCGCTTGCCCCACGTCCCTTCTCGGCTGCGTATGGGCTCTGAAACA
GGTACCACGACGGGTACTCGGCCTGCACCGATGACGAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig28254:437..1724-

>mRNA_H-paniculata_contig28254.7718.1 ID=mRNA_H-paniculata_contig28254.7718.1|Name=mRNA_H-paniculata_contig28254.7718.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=378bp|location=Sequence derived from alignment at H-paniculata_contig28254:437..1724- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTACGGGCGTGATGACCTTTTTGAAGTCTTCCGGGCGATCAAGCCTTT
TAGCTTGTTGAAAGCTTATGTACGGGCGTGATGACCTTTTTGAAGTCTTC
CGGGCGATCAAGCCTTTTAGCTTGTTGAAAGCTTATCCTTTCTACGAAAA
CGCTTGGTGGGCGAAGGTCGGGTACACGAGTGGCAGAATGAAGACTTCGC
AGAACATCTATCACAGCAGATCCTTTCTACGAAAACGCTTGGTGGGCGAA
GGTCGGGTACACGAGTGGCAGAATGAAGACTTCGCAGAACATCTATCACA
GCAGGTACCACGACGGGTACTCGGCCTGCACCGATGACGAGGTACCACGA
CGGGTACTCGGCCTGCACCGATGACGAG
back to top