mRNA_H-paniculata_contig2824.7712.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2824.7712.1
Unique NamemRNA_H-paniculata_contig2824.7712.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2824.7712.1 vs. uniprot
Match: D7G2F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2F9_ECTSI)

HSP 1 Score: 231 bits (589), Expect = 1.820e-62
Identity = 116/222 (52.25%), Postives = 151/222 (68.02%), Query Frame = 3 
Query:  933 KRRRLHLQPPKFDVEQHGGGTIRKRYSLDFKIKVAKYALSKDPNGQAKGGTIGPRYAAIQLGIPEAQSVREWMKRLPEMEAALADAQELGGASWSHHMANKKSFSLGKAPLTLGIEDQLIAYIKEIKAK------------------GELPVSSRLLKEKAEELRPGVFGIPP------DDDVVAIRKYEGKINSWCHRFLRRHRISGV--NESPLKRRTFG 1520
            K+R+L LQPP F++E+HGGG IRKRYSLDFK+K A+YALS DP GQA+GGT+G RYAA QL IPE+QSVREWM+RLPEMEA L  AQ  GG   S H+  KKS S G+ P T  IE++L+A+I+   +                   G   VSSR +K+KA+EL P VFG+ P      DD  VA ++YE K++SWCHRFL+RHR++ +  N +P+K++  G
Sbjct:  239 KQRKLQLQPPNFEIEKHGGGKIRKRYSLDFKVKAARYALSPDPKGQARGGTVGARYAAAQLDIPESQSVREWMRRLPEMEAELMRAQTDGGEKVSRHVRRKKSMSNGRVPATHKIEEELLAFIQRESSSCSFSNGVAQAXXXXXXXXGSKKVSSRAVKDKAQELMPDVFGVVPSWERDGDDYPVAFKRYEAKMSSWCHRFLKRHRVANLCENPNPIKKKRIG 460
[Close]
BLAST of mRNA_H-paniculata_contig2824.7712.1 vs. uniprot
Match: A0A6H5JI20_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI20_9PHAE)

HSP 1 Score: 231 bits (588), Expect = 1.160e-59
Identity = 115/210 (54.76%), Postives = 149/210 (70.95%), Query Frame = 3 
Query:  933 KRRRLHLQPPKFDVEQHGGGTIRKRYSLDFKIKVAKYALSKDPNGQAKGGTIGPRYAAIQLGIPEAQSVREWMKRLPEMEAALADAQELGGASWSHHMANKKSFSLGKAPLTLGIEDQLIAYIKEIK---------AKGELPVSSRLLKEKAEELRPGVFGIPP------DDDVVAIRKYEGKINSWCHRFLRRHRISGV--NESPLKRR 1511
            K+R+L LQPP F++E+HGGG IRKRYSLDFK+K A+YALS DP GQA+GGT+G RYAA QL IPE+QSVREWM+RLPEMEA L  AQ  GG   S H+  KKS S G+ P T  IE++L+A+I+            A     VSSR +K+KA+EL P VFG+ P      DD  VA ++YE K++SWCHRFL+RHR++ +  N +P+K++
Sbjct:  601 KQRKLQLQPPNFEIEKHGGGKIRKRYSLDFKVKAARYALSPDPKGQARGGTVGARYAAAQLDIPESQSVREWMRRLPEMEAELTRAQTDGGEKVSRHVRRKKSMSNGRVPATHMIEEELLAFIQRESSSCSFSNGAASRSKKVSSRAVKDKAQELMPDVFGVVPSWERDGDDYPVAFKRYEAKMSSWCHRFLKRHRVANLCENPNPIKKK 810
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BLAST of mRNA_H-paniculata_contig2824.7712.1 vs. uniprot
Match: A0A6H5K8J2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8J2_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 1.170e-27
Identity = 65/186 (34.95%), Postives = 106/186 (56.99%), Query Frame = 3 
Query:  933 KRRRLHLQPPKFDVEQHGGGTIRKRYSLDFKIKVAKYALSKDPNGQAKGGTIGPRYAAIQLGIPEAQSVREWMKRLPEMEAALA-DAQELGGASWSHHMANKKSFSLGKAPLTLGIEDQLIAYIKEIKAKG-ELPVSSRLLKEKAEELRPGVFGIPP-DDDVVAIRKYEGKINSWCHRFLRRHRIS 1481
            K+ +L L+PP F++   GGG+ RKRY L FK+   +Y+  +    Q  GGT+G  YA   L IP+  ++ EW++++PE EAALA +  +  G     +  N+ S + G+       E  ++ +I +++++     VS+++LK KA EL P  FG  P   D+    KY+ K++ WC RFL+ +R S
Sbjct:  144 KKGQLELEPPDFEIPNFGGGSQRKRYPLQFKVNAVRYSQKRVKGAQGPGGTVGISYATRVLNIPDKATLAEWVRKVPEYEAALAAEGGKFKGLKSKKNAKNRMSLNTGRVRTNREAEQAIVDWINDLRSESISARVSTKMLKHKAIELNPTFFGERPLVSDLAGNHKYKKKLSQWCRRFLKVYRFS 329
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BLAST of mRNA_H-paniculata_contig2824.7712.1 vs. uniprot
Match: A0A6H5J8Q8_9PHAE (TRAM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8Q8_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 1.470e-27
Identity = 67/185 (36.22%), Postives = 104/185 (56.22%), Query Frame = 3 
Query:  933 KRRRLHLQPPKFDVEQHGGGTIRKRYSLDFKIKVAKYALSKDPNGQAKGGTIGPRYAAIQLGIPEAQSVREWMKRLPEMEAALADAQELGGASWSHHMANKKSFSLGKAPLTLGIEDQLIAYIKEIKAKG-ELPVSSRLLKEKAEELRPGVFGI-PPDDDVVAIRKYEGKINSWCHRFLRRHRIS 1481
            K+ RL L+PP F +  HGGGT RKRY+L FK+   +Y+  K    Q  GGT+G  YA+  L IP+  ++  W+K + + EAALA+  +           ++ S ++G+       E +++ +I ++++ G    VS+R++K KA EL P  FG  PP  D+    +Y  K  +WC RFLR +R S
Sbjct:  384 KKGRLELEPPDFPIPDHGGGTQRKRYTLQFKVNAVRYSQRKLKGAQGPGGTVGVTYASRILKIPDKATLAAWVKDVDKYEAALAEETKYSRVKGRKKAKHRMSLNVGRTRTHTDAEREVVDWINDLRSDGISARVSTRMIKNKATELNPNFFGERPPPSDIEGNLRYTRKKTAWCRRFLRVYRFS 568
[Close]
BLAST of mRNA_H-paniculata_contig2824.7712.1 vs. uniprot
Match: A0A6H5KCX1_9PHAE (DDE-1 domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCX1_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 1.960e-27
Identity = 66/185 (35.68%), Postives = 104/185 (56.22%), Query Frame = 3 
Query:  933 KRRRLHLQPPKFDVEQHGGGTIRKRYSLDFKIKVAKYALSKDPNGQAKGGTIGPRYAAIQLGIPEAQSVREWMKRLPEMEAALADAQELGGASWSHHMANKKSFSLGKAPLTLGIEDQLIAYIKEIKAKG-ELPVSSRLLKEKAEELRPGVFGI-PPDDDVVAIRKYEGKINSWCHRFLRRHRIS 1481
            K+ RL L+PP F +  HGGGT RKRY+L FK+   +Y+  K    Q  GGT+G  YA+  L IP+  ++  W+K + + EAALA+  +           ++ S ++G+       E +++ +I ++++ G    VS+R++K KA EL P  FG  PP  D+ +  +Y  K  +WC R LR +R S
Sbjct:  106 KKGRLELEPPDFPIPDHGGGTQRKRYTLQFKVNAVRYSQRKLKGAQGPGGTVGVTYASRILKIPDKATLAAWVKDVDKYEAALAEETKYSRVKGRKEAKHRMSLNVGRTRTHTDAEREVVDWINDLRSDGISARVSTRMIKNKATELNPNFFGERPPPSDIESNLRYTRKKTAWCRRLLRVYRFS 290
[Close]
BLAST of mRNA_H-paniculata_contig2824.7712.1 vs. uniprot
Match: A0A6H5K5W7_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5W7_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 7.060e-27
Identity = 65/185 (35.14%), Postives = 104/185 (56.22%), Query Frame = 3 
Query:  933 KRRRLHLQPPKFDVEQHGGGTIRKRYSLDFKIKVAKYALSKDPNGQAKGGTIGPRYAAIQLGIPEAQSVREWMKRLPEMEAALADAQELGGASWSHHMANKKSFSLGKAPLTLGIEDQLIAYIKEIKAKG-ELPVSSRLLKEKAEELRPGVFGI-PPDDDVVAIRKYEGKINSWCHRFLRRHRIS 1481
            K+ RL L+PP   + +HGGGT RKRY+L FK+   +Y+  K    Q  GGT+G  YA+  L I +  ++  W+K + + EAALA+  +    +      ++ S ++G+       E +++ +I ++++ G    VS+R++K KA EL P  FG  PP  D+    +Y  K  +WC RFLR +R S
Sbjct:   16 KKGRLELEPPDVPIPEHGGGTQRKRYTLQFKVNAVRYSQRKLKGAQGPGGTVGVTYASRILKISDKATLAVWVKDVDKYEAALAEETKYSRVNGRKKAKHRMSLNVGRTRTHTDAEREVVDWINDLRSDGISARVSTRMIKNKATELNPNFFGERPPPSDIEGNLRYTRKKTAWCRRFLRVYRFS 200
[Close]
BLAST of mRNA_H-paniculata_contig2824.7712.1 vs. uniprot
Match: A0A6H5J6V1_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6V1_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 9.800e-27
Identity = 65/186 (34.95%), Postives = 106/186 (56.99%), Query Frame = 3 
Query:  933 KRRRLHLQPPKFDVEQHGGGTIRKRYSLDFKIKVAKYALSKDPNGQAKGGTIGPRYAAIQLGIPEAQSVREWMKRLPEMEAALA-DAQELGGASWSHHMANKKSFSLGKAPLTLGIEDQLIAYIKEIKAKG-ELPVSSRLLKEKAEELRPGVFGIPP-DDDVVAIRKYEGKINSWCHRFLRRHRIS 1481
            K+ +L L+PP F++   GGG+ RKRY L FK+   +Y+  +    Q  GGT+G  YA   L IP+  ++ EW++++PE EAALA +  +  G     +  N+ S + G+       E  ++ +I +++++     VS+++LK KA EL P  FG  P   D+    KY+ K++ WC RFL+ +R S
Sbjct:  144 KKGQLELEPPDFEIPNFGGGSQRKRYPLQFKVNAVRYSQKRVKGAQGPGGTVGISYATRVLNIPDKATLAEWVRKVPEYEAALAAEGGKFKGLKSKKNAKNRMSLNTGRVRTNREAEQAIVDWINDLRSESISARVSTKMLKHKAIELNPTFFGERPLVSDLAGNHKYKKKLSQWCRRFLKVYRFS 329
[Close]
BLAST of mRNA_H-paniculata_contig2824.7712.1 vs. uniprot
Match: A0A6H5JRS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRS3_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 2.980e-26
Identity = 66/185 (35.68%), Postives = 103/185 (55.68%), Query Frame = 3 
Query:  933 KRRRLHLQPPKFDVEQHGGGTIRKRYSLDFKIKVAKYALSKDPNGQAKGGTIGPRYAAIQLGIPEAQSVREWMKRLPEMEAALADAQELGGASWSHHMANKKSFSLGKAPLTLGIEDQLIAYIKEIKAKG-ELPVSSRLLKEKAEELRPGVFGI-PPDDDVVAIRKYEGKINSWCHRFLRRHRIS 1481
            K+ RL L+PP F +  HGGGT RKRY+L FK+   +Y+  K    Q  GGT+G   A+  L IP+  ++  W+K + + EAALA+  +           ++ S ++G+       E +++ +I ++++ G    VS+R++K KA EL P  FG  PP  D+    +Y  K  +WC RFLR +R S
Sbjct:   47 KKGRLELEPPDFPIPDHGGGTQRKRYTLQFKVNAVRYSQRKLKGAQGPGGTVGVTDASRILKIPDKATLATWVKDV-KYEAALAEETKYSRVKGRKKAKHRMSLNVGRTRTHTDAEREVVDWINDLRSDGISARVSTRMIKNKATELNPNFFGERPPPSDIEGNLRYTRKQTAWCRRFLRVYRFS 230
[Close]
BLAST of mRNA_H-paniculata_contig2824.7712.1 vs. uniprot
Match: A0A6H5JEJ4_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ4_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 5.740e-26
Identity = 65/185 (35.14%), Postives = 102/185 (55.14%), Query Frame = 3 
Query:  933 KRRRLHLQPPKFDVEQHGGGTIRKRYSLDFKIKVAKYALSKDPNGQAKGGTIGPRYAAIQLGIPEAQSVREWMKRLPEMEAALADAQELGGASWSHHMANKKSFSLGKAPLTLGIEDQLIAYIKEIKAKG-ELPVSSRLLKEKAEELRPGVFGI-PPDDDVVAIRKYEGKINSWCHRFLRRHRIS 1481
            K+ RL L+ P F +  HGGGT RKRY+L FK+   +Y+  K    Q  GGT+G  YA+  L IP+  ++  W+K + + EAALA+  +           ++ S ++G+       E +++ +I ++++ G    VS+R++K KA EL P  FG  PP  D+    +Y     +WC RFLR +R S
Sbjct:  224 KKGRLELESPDFPIPDHGGGTQRKRYTLQFKVNAVRYSQRKLKGAQGPGGTVGVTYASRILKIPDKATLAAWVKDVDKYEAALAEETKYSRVKGRKKAKHRMSLNVGRTRTHTDAEREVVDWINDLRSDGISARVSTRMIKNKATELNPNFFGERPPPSDIEGNLRYTRTKTAWCRRFLRVYRFS 408
[Close]
BLAST of mRNA_H-paniculata_contig2824.7712.1 vs. uniprot
Match: A0A6H5KA10_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA10_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 3.810e-24
Identity = 67/205 (32.68%), Postives = 106/205 (51.71%), Query Frame = 3 
Query:  933 KRRRLHLQPPKFDVEQHGGGTIRKRYSLDFKIKVAKYALSKDPNGQAKGGTIGPRYAAIQLGIPEAQSVREWMKRLPEMEAALADAQELGGASWSHHMANKKSFSLGKAPLTLGIEDQLIAYIKEIKAKG-ELPVSSRLLKEKAEELRPGVFGI-PPDDDVVAIRKYEGKINSWCHRFLRRHRIS--GVNESPLKRRTFGSVASP 1535
            K+ RL L+PP F +  HGGGT RKRY+L FK+   +Y+  K    Q  GGT+G  YA+  L I +  ++  W++ + + EAALA+  +           ++ S ++G+       E +++ +I ++++ G    VS+R++K KA EL P  FG   P  D+    +Y  K  +WC RF+R +  S   V     KR     V  P
Sbjct:   58 KKGRLELEPPDFPIPDHGGGTQRKRYTLQFKVNAVRYSQRKLKGAQGPGGTVGVTYASRILKILDKVTLAAWVEDVDKYEAALAEETKYSRVKGRKKAKHRMSLNVGRTRTHTDAEREVVDWINDLRSDGISARVSTRMIKNKATELNPNFFGERSPPSDIEGNLRYTRKKTAWCRRFVRVYSFSVRAVTRQGQKRVEEAEVRRP 262
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2824.7712.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D7G2F9_ECTSI1.820e-6252.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JI20_9PHAE1.160e-5954.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8J2_9PHAE1.170e-2734.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J8Q8_9PHAE1.470e-2736.22TRAM domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KCX1_9PHAE1.960e-2735.68DDE-1 domain-containing protein n=4 Tax=Ectocarpus... [more]
A0A6H5K5W7_9PHAE7.060e-2735.14DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5J6V1_9PHAE9.800e-2734.95DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JRS3_9PHAE2.980e-2635.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEJ4_9PHAE5.740e-2635.14DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KA10_9PHAE3.810e-2432.68DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2824contigH-paniculata_contig2824:10548..14146 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_001430.1
Exons2
Model size3051
Cds size2208
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2824.7712.1prot_H-paniculata_contig2824.7712.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2824 10685..13440 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929857.2306373-UTR-H-paniculata_contig2824:10547..106841622929857.2306373-UTR-H-paniculata_contig2824:10547..10684Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2824 10548..10684 +
1691481042.0613437-UTR-H-paniculata_contig2824:10547..106841691481042.0613437-UTR-H-paniculata_contig2824:10547..10684Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2824 10548..10684 +
1622929857.2735353-UTR-H-paniculata_contig2824:13440..141461622929857.2735353-UTR-H-paniculata_contig2824:13440..14146Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2824 13441..14146 +
1691481042.0867345-UTR-H-paniculata_contig2824:13440..141461691481042.0867345-UTR-H-paniculata_contig2824:13440..14146Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2824 13441..14146 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929857.2464213-CDS-H-paniculata_contig2824:10684..116171622929857.2464213-CDS-H-paniculata_contig2824:10684..11617Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2824 10685..11617 +
1691481042.0701041-CDS-H-paniculata_contig2824:10684..116171691481042.0701041-CDS-H-paniculata_contig2824:10684..11617Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2824 10685..11617 +
1622929857.2610512-CDS-H-paniculata_contig2824:12165..134401622929857.2610512-CDS-H-paniculata_contig2824:12165..13440Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2824 12166..13440 +
1691481042.078134-CDS-H-paniculata_contig2824:12165..134401691481042.078134-CDS-H-paniculata_contig2824:12165..13440Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2824 12166..13440 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2824.7712.1

>prot_H-paniculata_contig2824.7712.1 ID=prot_H-paniculata_contig2824.7712.1|Name=mRNA_H-paniculata_contig2824.7712.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=736bp
MDSNGTSASASNNDDENDGQDKYIDVTASSDSPSQRGSPGKQPIRAESDT
ESESPAAVTGGNSIQHPPEQSRGPGRPRRDLLDTSVTSSKPVGTSDSVFS
GVANAPICGGLQVLGQAVESATLASLRDPPREGVAAKTAEIRARTGDIDH
TEQAPDSAVEGSGEHVASRRSSARKRTPTAKVQDSATLEDDHEDCSVEGQ
HRRSGPPAVDGDAGKQGSESTAAAKSSASSSGGGASQGKKRRAGSQGTSK
SSKRGGSKAKGKKQPKRRRLHLQPPKFDVEQHGGGTIRKRYSLDFKIKVA
KYALSKDPNGQAKGGTIGPRYAAIQLGIPEAQSVREWMKRLPEMEAALAD
AQELGGASWSHHMANKKSFSLGKAPLTLGIEDQLIAYIKEIKAKGELPVS
SRLLKEKAEELRPGVFGIPPDDDVVAIRKYEGKINSWCHRFLRRHRISGV
NESPLKRRTFGSVASPTVSTSGPTVSTSGPTVSTSGGGGGNGSSGFAFSS
GLPGLSGLVASAAGAVGISSIPGASPPQMLSLASASSTTAYTAPLAANTA
TATTTIDTTAFTTTATAAPASVAATAEITTVATTTPATTTAATTTAVGTI
EPNSSDSVVHGRSATPGAAAVGGPRVVAATSYLGITPQAPPAQPGHASWP
SPTMNLASFPSLANNSMSRDGASALTKGALQDPAAHQHSTAPGESGAVRN
ESSAVLDEGGAVSDEGGAEPTESDSPVRVDDDDDA*
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mRNA from alignment at H-paniculata_contig2824:10548..14146+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2824.7712.1 ID=mRNA_H-paniculata_contig2824.7712.1|Name=mRNA_H-paniculata_contig2824.7712.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3599bp|location=Sequence derived from alignment at H-paniculata_contig2824:10548..14146+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTGTCTTTTGTTTTGCTCCTATAGTAAATTGACAACACGTGGTTATCAC
CCCCCGTAAAACAACACGATCGAAGTTTAACACCCCCCTGATAACAGGAC
GCTCCAAAGGCACAGCCAGTGACGCCGACGCACGACGATGGATTCAAATG
GTACCAGTGCTTCTGCTTCGAATAACGACGATGAAAATGACGGACAGGAT
AAATATATCGACGTTACCGCCTCTTCTGACAGCCCATCTCAGCGCGGTAG
CCCAGGAAAGCAACCTATTCGAGCCGAAAGCGACACTGAAAGCGAATCCC
CCGCGGCTGTCACGGGCGGTAACTCAATCCAGCACCCTCCTGAACAAAGC
CGCGGCCCAGGACGACCTCGTCGTGACCTTCTCGACACCTCTGTCACATC
TAGTAAGCCCGTAGGCACGAGCGATTCTGTTTTTTCTGGAGTTGCTAACG
CTCCGATTTGCGGTGGGCTCCAGGTTCTTGGCCAAGCGGTCGAATCTGCA
ACCTTGGCCAGCCTCCGGGATCCTCCGAGAGAGGGCGTCGCAGCCAAAAC
AGCAGAGATCAGGGCTCGGACGGGAGACATCGACCACACCGAACAAGCGC
CGGACAGCGCGGTGGAGGGAAGTGGAGAGCACGTTGCGTCCAGGAGGAGT
AGTGCACGAAAGCGTACACCGACGGCCAAGGTGCAGGATTCCGCTACCCT
AGAAGACGATCACGAGGACTGCTCCGTTGAGGGCCAGCACAGAAGGTCTG
GCCCACCTGCCGTTGACGGAGACGCTGGCAAGCAAGGTTCGGAATCGACA
GCGGCGGCAAAGTCATCTGCTTCATCTAGCGGAGGGGGGGCAAGCCAAGG
CAAGAAGCGGCGGGCGGGGAGTCAAGGTACTTCAAAGTCGTCGAAACGTG
GAGGAAGCAAGGCGAAGGGCAAGAAACAACCGAAGAGGCGGAGGCTCCAC
CTGCAGCCGCCGAAGTTCGACGTGGAGCAGCACGGTGGGGGGACCATCCG
AAAGAGATACTCGCTCGACTTCAAGATCAAAGTCGCCAAGTATGCCCTTT
CGAAGGATCCCAACGGTCAGGTAAGGAAACTGTACGATACACGCTGTGTT
ATTGTTTTACGTAGCAGTGATTCTTGACTTCAAGCTACATCCGCTAGAGC
AATGCTAGAGCTGTAAATCTGCAGGCCACGACGTGTGAAGTATTACCTAT
ATGGTACACAGAACAGTACACCGCATAGACGACGGATCCCCCAAACTGTA
CTGTGTCTGTCCATCAGCAACATGTTGGCACTTATCACCGGTAGGTGCTC
TTCATCAACCCCGCTCCCCCAGTGCATGCACAACGGTTCTCCTATGCAGG
TGTAAAATCCATCATGTCTAAGTCCTCTATTTTCAGCGGAATACCGGGAG
TAAATCTATGAACATCTGTCAGTCCCAGCTGCGGCACAGAGAATCGCGTA
TTCTTCATGACAGAGAAGACACAACTAAATTCAGCTCTCTCGATGGGTCG
GTCTTGCTGGACCACTCCGTGTTACTTAGATTTTGACGTTTTCGAAACTT
GACGAAAATCCTTTGCATTGTACTCTCCGGACATTTGTTGACCCTTGTTC
GTTTTTACCCGTGAAAAGGCGAAGGGCGGGACAATTGGCCCCCGTTACGC
GGCGATACAGCTCGGGATTCCGGAGGCGCAGAGTGTGAGAGAGTGGATGA
AACGCCTCCCCGAGATGGAAGCTGCCCTGGCGGACGCGCAGGAGCTGGGC
GGGGCGAGCTGGTCTCACCACATGGCGAACAAGAAGTCGTTTTCTCTAGG
GAAGGCACCGTTAACCCTTGGCATTGAAGATCAACTGATCGCATACATAA
AGGAAATTAAAGCCAAAGGCGAACTCCCGGTGTCCTCGCGGCTTCTAAAG
GAAAAGGCAGAAGAGCTTCGGCCGGGCGTGTTCGGAATACCCCCGGATGA
CGACGTCGTTGCGATCCGGAAATATGAGGGAAAGATCAACTCCTGGTGTC
ACCGGTTTCTCCGACGCCACCGCATCTCCGGTGTAAACGAAAGTCCCCTT
AAGAGGCGCACTTTCGGGAGTGTCGCCTCGCCCACTGTAAGTACAAGCGG
GCCCACTGTTAGTACCAGCGGGCCCACTGTGAGTACCAGCGGCGGCGGCG
GTGGCAATGGCAGCAGTGGCTTCGCCTTTAGTTCAGGACTTCCGGGACTT
TCGGGGCTAGTTGCGAGCGCCGCTGGTGCTGTCGGTATTTCAAGCATACC
TGGCGCGTCGCCGCCGCAGATGCTCTCTCTTGCCTCTGCTTCTTCTACAA
CAGCATACACAGCTCCCCTTGCTGCTAACACCGCTACCGCCACCACCACT
ATCGATACAACCGCTTTCACCACCACCGCTACCGCCGCCCCCGCTTCCGT
TGCCGCTACCGCCGAAATCACTACCGTAGCAACCACCACTCCCGCAACCA
CCACTGCCGCTACCACCACTGCTGTAGGCACCATCGAACCAAATTCGAGC
GATTCGGTCGTGCACGGTAGGTCCGCCACCCCCGGTGCTGCAGCCGTTGG
TGGACCAAGGGTTGTTGCTGCGACCAGTTATCTCGGCATAACGCCTCAGG
CACCTCCCGCACAGCCAGGGCACGCCTCGTGGCCATCACCGACCATGAAT
CTAGCGTCTTTTCCGTCTCTGGCAAATAACTCCATGTCCCGGGACGGTGC
ATCGGCCCTCACCAAGGGAGCCCTGCAAGATCCCGCTGCGCATCAACACT
CGACTGCACCGGGTGAGAGCGGCGCAGTTCGGAATGAGAGCAGCGCGGTG
TTAGACGAGGGCGGCGCGGTGTCAGATGAGGGCGGCGCAGAGCCGACTGA
GAGTGACTCACCCGTACGAGTGGATGATGACGACGATGCATGAAGCCCGG
CAAGGCCATATCTTGTGAGACTCATTCACTTTGTATTTGTCTGCCGTTAG
AGGCTGGCGGGGTGAGATGGGGTGACAAGAACTCGAGCGGGCAAGCAGGA
CCGATTGGCTCTACTCTATGACACGACGGAATTTCGAAGCGCAAGTGGAT
AGAGTGGAGAAGGAAGCAAAGGATGCGGCGTGCTGGAGATAAGGGAGGTG
GGAGGGGGTCTCAACATGGGCATACCAGGCAAACATTTTACTGTAGCACG
ACTCGTGTGTGAATTAGTGAGGCAGTTGTATGACTTTAAAGATATCGTGG
ACATATTTCCCCAGCGGTTCGTGTGTACTATTGCGGATAGTGTTGGGATG
TACAGTGTAAGAGTTGTTAGTGTCACCAGGATTTTGGTGGATAGGGTAGA
GAACTCGTCTTCTTTGCATTTTCTTTGTGTGTGTGATGAATTACGCGTAG
TGAGGTCTAATTGCAAATTCCTTCAGGTTCTCTGAAGTATCGTCGTTCAT
GGGGTAGTTGCGTATGGTGATTGCCGTGGTTGTACGTTTCAAGCACACCA
TAGTTGGAGTGGCTGCTTGGTGATGGCTGATGACAGATAATTTTCAACAT
TCTCCCATTCTCCACAACGTGTCTATTTATGGCATACCTGACCGAAGGAC
CTGGACAAGGGCGTGTTACACCGGGTGTAATAACTGTGTAACAGAGCTG
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Coding sequence (CDS) from alignment at H-paniculata_contig2824:10548..14146+

>mRNA_H-paniculata_contig2824.7712.1 ID=mRNA_H-paniculata_contig2824.7712.1|Name=mRNA_H-paniculata_contig2824.7712.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4416bp|location=Sequence derived from alignment at H-paniculata_contig2824:10548..14146+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATTCAAATGGTACCAGTGCTTCTGCTTCGAATAACGACGATGAAAA
TGACGGACAGGATAAATATATCGACGTTACCGCCTCTTCTGACAGCCCAT
CTCAGCGCGGTAGCCCAGGAAAGCAACCTATTCGAGCCGAAAGCGACACT
GAAAGCGAATCCCCCGCGGCTGTCACGGGCGGTAACTCAATCCAGCACCC
TCCTGAACAAAGCCGCGGCCCAGGACGACCTCGTCGTGACCTTCTCGACA
CCTCTGTCACATCTAGTAAGCCCGTAGGCACGAGCGATTCTGTTTTTTCT
GGAGTTGCTAACGCTCCGATTTGCGGTGGGCTCCAGGTTCTTGGCCAAGC
GGTCGAATCTGCAACCTTGGCCAGCCTCCGGGATCCTCCGAGAGAGGGCG
TCGCAGCCAAAACAGCAGAGATCAGGGCTCGGACGGGAGACATCGACCAC
ACCGAACAAGCGCCGGACAGCGCGGTGGAGGGAAGTGGAGAGCACGTTGC
GTCCAGGAGGAGTAGTGCACGAAAGCGTACACCGACGGCCAAGGTGCAGG
ATTCCGCTACCCTAGAAGACGATCACGAGGACTGCTCCGTTGAGGGCCAG
CACAGAAGGTCTGGCCCACCTGCCGTTGACGGAGACGCTGGCAAGCAAGG
TTCGGAATCGACAGCGGCGGCAAAGTCATCTGCTTCATCTAGCGGAGGGG
GGGCAAGCCAAGGCAAGAAGCGGCGGGCGGGGAGTCAAGGTACTTCAAAG
TCGTCGAAACGTGGAGGAAGCAAGGCGAAGGGCAAGAAACAACCGAAGAG
GCGGAGGCTCCACCTGCAGCCGCCGAAGTTCGACGTGGAGCAGCACGGTG
GGGGGACCATCCGAAAGAGATACTCGCTCGACTTCAAGATCAAAGTCGCC
AAGTATGCCCTTTCGAAGGATCCCAACGGTCAGATGGATTCAAATGGTAC
CAGTGCTTCTGCTTCGAATAACGACGATGAAAATGACGGACAGGATAAAT
ATATCGACGTTACCGCCTCTTCTGACAGCCCATCTCAGCGCGGTAGCCCA
GGAAAGCAACCTATTCGAGCCGAAAGCGACACTGAAAGCGAATCCCCCGC
GGCTGTCACGGGCGGTAACTCAATCCAGCACCCTCCTGAACAAAGCCGCG
GCCCAGGACGACCTCGTCGTGACCTTCTCGACACCTCTGTCACATCTAGT
AAGCCCGTAGGCACGAGCGATTCTGTTTTTTCTGGAGTTGCTAACGCTCC
GATTTGCGGTGGGCTCCAGGTTCTTGGCCAAGCGGTCGAATCTGCAACCT
TGGCCAGCCTCCGGGATCCTCCGAGAGAGGGCGTCGCAGCCAAAACAGCA
GAGATCAGGGCTCGGACGGGAGACATCGACCACACCGAACAAGCGCCGGA
CAGCGCGGTGGAGGGAAGTGGAGAGCACGTTGCGTCCAGGAGGAGTAGTG
CACGAAAGCGTACACCGACGGCCAAGGTGCAGGATTCCGCTACCCTAGAA
GACGATCACGAGGACTGCTCCGTTGAGGGCCAGCACAGAAGGTCTGGCCC
ACCTGCCGTTGACGGAGACGCTGGCAAGCAAGGTTCGGAATCGACAGCGG
CGGCAAAGTCATCTGCTTCATCTAGCGGAGGGGGGGCAAGCCAAGGCAAG
AAGCGGCGGGCGGGGAGTCAAGGTACTTCAAAGTCGTCGAAACGTGGAGG
AAGCAAGGCGAAGGGCAAGAAACAACCGAAGAGGCGGAGGCTCCACCTGC
AGCCGCCGAAGTTCGACGTGGAGCAGCACGGTGGGGGGACCATCCGAAAG
AGATACTCGCTCGACTTCAAGATCAAAGTCGCCAAGTATGCCCTTTCGAA
GGATCCCAACGGTCAGGCGAAGGGCGGGACAATTGGCCCCCGTTACGCGG
CGATACAGCTCGGGATTCCGGAGGCGCAGAGTGTGAGAGAGTGGATGAAA
CGCCTCCCCGAGATGGAAGCTGCCCTGGCGGACGCGCAGGAGCTGGGCGG
GGCGAGCTGGTCTCACCACATGGCGAACAAGAAGTCGTTTTCTCTAGGGA
AGGCACCGTTAACCCTTGGCATTGAAGATCAACTGATCGCATACATAAAG
GAAATTAAAGCCAAAGGCGAACTCCCGGTGTCCTCGCGGCTTCTAAAGGA
AAAGGCAGAAGAGCTTCGGCCGGGCGTGTTCGGAATACCCCCGGATGACG
ACGTCGTTGCGATCCGGAAATATGAGGGAAAGATCAACTCCTGGTGTCAC
CGGTTTCTCCGACGCCACCGCATCTCCGGTGTAAACGAAAGTCCCCTTAA
GAGGCGCACTTTCGGGAGTGTCGCCTCGCCCACTGTAAGTACAAGCGGGC
CCACTGTTAGTACCAGCGGGCCCACTGTGAGTACCAGCGGCGGCGGCGGT
GGCAATGGCAGCAGTGGCTTCGCCTTTAGTTCAGGACTTCCGGGACTTTC
GGGGCTAGTTGCGAGCGCCGCTGGTGCTGTCGGTATTTCAAGCATACCTG
GCGCGTCGCCGCCGCAGATGCTCTCTCTTGCCTCTGCTTCTTCTACAACA
GCATACACAGCTCCCCTTGCTGCTAACACCGCTACCGCCACCACCACTAT
CGATACAACCGCTTTCACCACCACCGCTACCGCCGCCCCCGCTTCCGTTG
CCGCTACCGCCGAAATCACTACCGTAGCAACCACCACTCCCGCAACCACC
ACTGCCGCTACCACCACTGCTGTAGGCACCATCGAACCAAATTCGAGCGA
TTCGGTCGTGCACGGTAGGTCCGCCACCCCCGGTGCTGCAGCCGTTGGTG
GACCAAGGGTTGTTGCTGCGACCAGTTATCTCGGCATAACGCCTCAGGCA
CCTCCCGCACAGCCAGGGCACGCCTCGTGGCCATCACCGACCATGAATCT
AGCGTCTTTTCCGTCTCTGGCAAATAACTCCATGTCCCGGGACGGTGCAT
CGGCCCTCACCAAGGGAGCCCTGCAAGATCCCGCTGCGCATCAACACTCG
ACTGCACCGGGTGAGAGCGGCGCAGTTCGGAATGAGAGCAGCGCGGTGTT
AGACGAGGGCGGCGCGGTGTCAGATGAGGGCGGCGCAGAGCCGACTGAGA
GTGACTCACCCGTACGAGTGGATGATGACGACGATGCATGAGCGAAGGGC
GGGACAATTGGCCCCCGTTACGCGGCGATACAGCTCGGGATTCCGGAGGC
GCAGAGTGTGAGAGAGTGGATGAAACGCCTCCCCGAGATGGAAGCTGCCC
TGGCGGACGCGCAGGAGCTGGGCGGGGCGAGCTGGTCTCACCACATGGCG
AACAAGAAGTCGTTTTCTCTAGGGAAGGCACCGTTAACCCTTGGCATTGA
AGATCAACTGATCGCATACATAAAGGAAATTAAAGCCAAAGGCGAACTCC
CGGTGTCCTCGCGGCTTCTAAAGGAAAAGGCAGAAGAGCTTCGGCCGGGC
GTGTTCGGAATACCCCCGGATGACGACGTCGTTGCGATCCGGAAATATGA
GGGAAAGATCAACTCCTGGTGTCACCGGTTTCTCCGACGCCACCGCATCT
CCGGTGTAAACGAAAGTCCCCTTAAGAGGCGCACTTTCGGGAGTGTCGCC
TCGCCCACTGTAAGTACAAGCGGGCCCACTGTTAGTACCAGCGGGCCCAC
TGTGAGTACCAGCGGCGGCGGCGGTGGCAATGGCAGCAGTGGCTTCGCCT
TTAGTTCAGGACTTCCGGGACTTTCGGGGCTAGTTGCGAGCGCCGCTGGT
GCTGTCGGTATTTCAAGCATACCTGGCGCGTCGCCGCCGCAGATGCTCTC
TCTTGCCTCTGCTTCTTCTACAACAGCATACACAGCTCCCCTTGCTGCTA
ACACCGCTACCGCCACCACCACTATCGATACAACCGCTTTCACCACCACC
GCTACCGCCGCCCCCGCTTCCGTTGCCGCTACCGCCGAAATCACTACCGT
AGCAACCACCACTCCCGCAACCACCACTGCCGCTACCACCACTGCTGTAG
GCACCATCGAACCAAATTCGAGCGATTCGGTCGTGCACGGTAGGTCCGCC
ACCCCCGGTGCTGCAGCCGTTGGTGGACCAAGGGTTGTTGCTGCGACCAG
TTATCTCGGCATAACGCCTCAGGCACCTCCCGCACAGCCAGGGCACGCCT
CGTGGCCATCACCGACCATGAATCTAGCGTCTTTTCCGTCTCTGGCAAAT
AACTCCATGTCCCGGGACGGTGCATCGGCCCTCACCAAGGGAGCCCTGCA
AGATCCCGCTGCGCATCAACACTCGACTGCACCGGGTGAGAGCGGCGCAG
TTCGGAATGAGAGCAGCGCGGTGTTAGACGAGGGCGGCGCGGTGTCAGAT
GAGGGCGGCGCAGAGCCGACTGAGAGTGACTCACCCGTACGAGTGGATGA
TGACGACGATGCATGA
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