mRNA_H-paniculata_contig11210.771.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11210.771.1
Unique NamemRNA_H-paniculata_contig11210.771.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig11210.771.1 vs. uniprot
Match: D7FWR6_ECTSI (Putative 2-hydroxy-6-oxo-2,4-heptadienoate hydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWR6_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 5.590e-6
Identity = 38/66 (57.58%), Postives = 43/66 (65.15%), Query Frame = 1 
Query: 1543 DMFLPSRRPLREMGECDD---WGAEGEEEFMSMLNLAMDEQQDAEARRTGAASMASLEGLGWDDED 1731
            +  L S RPL E GE DD   WGA+GEEEFMSMLNLAM E+QDAE  RT   +   +E L  D ED
Sbjct:  756 EQSLLSPRPLDEFGEGDDGYDWGADGEEEFMSMLNLAM-EEQDAELSRTKGGAAMDMELLDMDMED 820
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11210.771.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FWR6_ECTSI5.590e-657.58Putative 2-hydroxy-6-oxo-2,4-heptadienoate hydrola... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11210contigH-paniculata_contig11210:1459..4426 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1758
Cds size1752
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11210.771.1prot_H-paniculata_contig11210.771.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11210 1465..4426 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928825.6722603-UTR-H-paniculata_contig11210:1458..14641622928825.6722603-UTR-H-paniculata_contig11210:1458..1464Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11210 1459..1464 +
1691480635.3715637-UTR-H-paniculata_contig11210:1458..14641691480635.3715637-UTR-H-paniculata_contig11210:1458..1464Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11210 1459..1464 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928825.684298-CDS-H-paniculata_contig11210:1464..15521622928825.684298-CDS-H-paniculata_contig11210:1464..1552Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11210 1465..1552 +
1691480635.3811185-CDS-H-paniculata_contig11210:1464..15521691480635.3811185-CDS-H-paniculata_contig11210:1464..1552Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11210 1465..1552 +
1622928825.6967032-CDS-H-paniculata_contig11210:2023..26011622928825.6967032-CDS-H-paniculata_contig11210:2023..2601Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11210 2024..2601 +
1691480635.389522-CDS-H-paniculata_contig11210:2023..26011691480635.389522-CDS-H-paniculata_contig11210:2023..2601Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11210 2024..2601 +
1622928825.7094526-CDS-H-paniculata_contig11210:2887..30421622928825.7094526-CDS-H-paniculata_contig11210:2887..3042Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11210 2888..3042 +
1691480635.3978024-CDS-H-paniculata_contig11210:2887..30421691480635.3978024-CDS-H-paniculata_contig11210:2887..3042Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11210 2888..3042 +
1622928825.7235265-CDS-H-paniculata_contig11210:3273..41021622928825.7235265-CDS-H-paniculata_contig11210:3273..4102Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11210 3274..4102 +
1691480635.4158552-CDS-H-paniculata_contig11210:3273..41021691480635.4158552-CDS-H-paniculata_contig11210:3273..4102Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11210 3274..4102 +
1622928825.7371583-CDS-H-paniculata_contig11210:4324..44261622928825.7371583-CDS-H-paniculata_contig11210:4324..4426Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11210 4325..4426 +
1691480635.423994-CDS-H-paniculata_contig11210:4324..44261691480635.423994-CDS-H-paniculata_contig11210:4324..4426Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11210 4325..4426 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11210.771.1

>prot_H-paniculata_contig11210.771.1 ID=prot_H-paniculata_contig11210.771.1|Name=mRNA_H-paniculata_contig11210.771.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=584bp
MLKFQQQQQLQVYAQQSQAAQFQALASQVCRSSATGISAAGGSAPASAGA
VPPSPSFSGGAMRPASPAGSTVSLPAGTAASGAGAGAGDNAIGGFTLPPT
LTSKAGLGVGSGGGRDGTTSAVEGGSTHGGAGSLIGAGLGAAGRPGPAVA
TGGGGGGGVGGGGSGAIAAHQQQATLMQNFEASTAASRAAAAASGGGGGV
IEAAAASGGVGVGGARSGGNMPNVVEQQMLIRQQRQMAAAMAQQQLQLIR
QQQQQQQQQQQQQNQNQNQNQQQPDPTTALAGPQASFVQNLWLAGGIGVG
PHQQAITALSLTAQQEQQQQQQQQAQLLASKVFPSNNVGQPRADAVGTGE
VAAGLALTESPGAAAPGTAEIGSLQPQGRGGGQSFTASAGAAAAVTSSGS
APMPLDFVSLQQQQQQEIAASGVGGMTTFGAPAPSVASADGSVCGATTGG
GGDGSKTVRPPPTGSGVGFAGIQQTVVGGTADERGTSGGMGGSADGRAAK
DAGSSAAEGADGDMFLPSRRPLREMGECDDWGAEGEEEFMSMLNLAMDEQ
QDAEARRTGAASMASLEGLGWDDEDDFHFEGEP*
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mRNA from alignment at H-paniculata_contig11210:1459..4426+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11210.771.1 ID=mRNA_H-paniculata_contig11210.771.1|Name=mRNA_H-paniculata_contig11210.771.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2968bp|location=Sequence derived from alignment at H-paniculata_contig11210:1459..4426+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTCAGATGCTCAAGTTCCAGCAGCAACAGCAACTGCAGGTGTACGCGCA
GCAATCGCAGGCTGCGCAGTTTCAGGCGCTGGCATCACAGGTTTGTGTTC
TTACCCTCATGTACGTCTGTCTGTTTATTTGTGTCGCAAAAGTTGAGAGT
AACTAGGGGAAGCGGCTTTGGCGCTGGCTGTTCGCTGCTTGTTTTTTTAC
TGTAGCATGTTGTTTTCAACCCTTTTTCAAATGGCGAAATCAGTATATTT
TATAGAAAACCTTGTGAGTGCAGCACAGTTTTGGTTTCGAGTTAGTAGTC
GCTACTGTCGGCGCATCCTTGATTTGTCGTGATTTATTCAGTCGATCAAC
CACGTCTTGTGCCATGCGTTACCCGTGGCTCACGTTTCCCGGGAGCCTTG
TTGCTTACCGCCTTGTGAACGGAGTGAAACAAGCGCGCGTACAGTATTGG
TCAGCAATACTGTATTTATTTTACCTTCTCTGTACCTAGATGTACCCTCC
CCTTCGCTTATCTCCCCTTCGATTGCAGATACAAACCGGCTTGCCGTTAG
CCCAAGGACAAACAGGCCGATCTTCGGCAACCGGCATATCGGCCGCTGGC
GGCAGCGCACCTGCCAGCGCCGGCGCAGTGCCCCCCAGTCCATCCTTTTC
CGGGGGGGCGATGCGTCCCGCTTCTCCAGCAGGTTCCACAGTATCTTTGC
CGGCGGGGACGGCCGCATCTGGTGCCGGCGCGGGCGCAGGCGACAACGCC
ATAGGCGGTTTTACTCTTCCCCCCACGCTCACGTCCAAAGCTGGTCTTGG
TGTTGGCAGTGGTGGAGGGAGGGATGGGACCACGTCGGCCGTTGAAGGTG
GAAGCACTCACGGAGGTGCTGGATCGCTCATCGGGGCTGGCCTTGGAGCG
GCAGGGAGACCTGGACCCGCCGTCGCGACCGGCGGCGGCGGCGGCGGTGG
TGTTGGTGGTGGTGGTAGTGGTGCGATTGCAGCACATCAGCAACAGGCAA
CACTAATGCAGAATTTCGAAGCCTCTACTGCGGCATCTCGCGCTGCGGCG
GCGGCATCGGGGGGTGGGGGAGGCGTTATCGAAGCCGCGGCAGCGTCCGG
TGGAGTAGGGGTAGGGGGTGCTCGAAGTGGTGGGAACATGCCTGTGAGTT
TCATGTGTTTTCTTTTCTTCGGATACAATTTGTGATTTGCTCCTCGTCTT
GTCGTGTGTGTATATGTGTGCGTGTATTTTGGTGTATTTGGTGGCGTGGC
TTGGCTTCGCTCAGGCTTTGTTGCATGTGTTGCGGCGTTGAAAAATGCAC
ACCTCCTATTGGTGTCGTGGGCCGTCAGCTGACATTGTTCACGCACGCTA
CGTTCGCCCTGCGCACCCTTTGTTCTTTGTTTTTTTACATCCCTGTAACG
TGCCTTCGCATGTGGGTATACATGAGCAGAACGTGGTGGAACAGCAGATG
CTCATCCGCCAGCAAAGGCAGATGGCTGCCGCGATGGCCCAACAGCAGCT
GCAGCTTATTCGTCAACAGCAACAGCAACAGCAACAGCAACAGCAACAGC
AAAACCAGAACCAGAACCAGAACCAGCAGCAACCGTCACTGTTGACTACT
TTGCCGCCACTGCCCGCGGTAGAAAGAGTTGCACACGCCGCGCTATCTAC
GGAGGAACAGCTCAAGTCGCCATCCCAGCATCAGCAACAACAACAGCCGC
AAGTGATGTTGTCGCGAAGTGTCCCAACTGACTTCCCTTACCCATCTGTC
CTCGCTCCCTCCACAGCCGCCGCTGCCGCAGCCGTCAATGGGGCACCGGT
CGCGGGCCGGGCAAGCGACCCCACCACAGCGCTTGCGGGACCGCAGGCAT
CTTTCGTTCAAAACCTCTGGCTAGCAGGAGGAATAGGGGTGGGTCCGCAT
CAGCAAGCAATAACTGCGCTCAGCCTAACGGCGCAGCAGGAGCAGCAGCA
GCAACAACAGCAGCAGGCACAGCTGCTTGCGTCAAAGGTGTTTCCGAGCA
ATAACGTCGGTCAACCACGTGCCGATGCCGTTGGGACTGGGGAAGTGGCG
GCGGGGCTGGCGTTGACAGAGTCTCCCGGTGCTGCGGCTCCTGGCACAGC
AGAGATTGGGAGTTTGCAACCTCAGGGTCGGGGGGGGGGGCAGTCCTTTA
CAGCATCAGCTGGAGCCGCTGCAGCTGTCACAAGTTCTGGTAGTGCGCCT
ATGCCTCTAGACTTTGTTTCGCTTCAGCAGCAGCAGCAGCAGGAAATCGC
GGCCTCCGGCGTCGGCGGGATGACGACATTTGGGGCACCTGCCCCATCCG
TCGCCAGCGCAGATGGAAGTGTCTGCGGGGCAACGACTGGCGGCGGCGGT
GACGGAAGCAAGACAGTGCGTCCTCCCCCGACTGGGTCAGGTGTTGGGTT
TGCGGGCATTCAACAGACTGTCGTCGGGGGGACCGCCGACGAACGTGGCA
CTAGCGGCGGCATGGGTGGCTCAGCTGATGGTAGAGCAGCGAAAGATGCG
GGATCTAGTGCGGCAGAGGGGGCAGACGGGGACATGTTTCTCCCGTCTCG
TCGGCCATTACGGGAGATGGGGGAATGCGATGACTGGGGGGCTGAGGGTG
AAGAGGAGTTCATGAGTATGCTGAACCTCGCTATGGACGAGCAGGTAACA
GTAGGTGGTACATACTGGGGGTCGCAGGGGGGTTGCTTCTAGGTACACGT
TTTGCTTGGGGTTCGTGTTGGGGTGGGGTGTTTGCGATTCTGGTCGAGGA
GGTGACGTAGGTTTGTTTGTCTCCCTCTCGGTGCATGGTCATCCCATGTC
GACGTGTAGTGGGGTGTTACCTTTTTTAGCAGCGAGCTTTCCCGTCCTCC
CTGTTGTTCTGGTTAGCAGGATGCTGAGGCAAGAAGGACAGGAGCCGCAT
CGATGGCGAGCCTAGAGGGGTTAGGGTGGGATGACGAAGACGATTTTCAT
TTCGAAGGTGAACCTTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig11210:1459..4426+

>mRNA_H-paniculata_contig11210.771.1 ID=mRNA_H-paniculata_contig11210.771.1|Name=mRNA_H-paniculata_contig11210.771.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3504bp|location=Sequence derived from alignment at H-paniculata_contig11210:1459..4426+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTCAAGTTCCAGCAGCAACAGCAACTGCAGGTGTACGCGCAGCAATC
GCAGGCTGCGCAGTTTCAGGCGCTGGCATCACAGGTTTATGCTCAAGTTC
CAGCAGCAACAGCAACTGCAGGTGTACGCGCAGCAATCGCAGGCTGCGCA
GTTTCAGGCGCTGGCATCACAGGTTTGCCGATCTTCGGCAACCGGCATAT
CGGCCGCTGGCGGCAGCGCACCTGCCAGCGCCGGCGCAGTGCCCCCCAGT
CCATCCTTTTCCGGGGGGGCGATGCGTCCCGCTTCTCCAGCAGGTTCCAC
AGTATCTTTGCCGGCGGGGACGGCCGCATCTGGTGCCGGCGCGGGCGCAG
GCGACAACGCCATAGGCGGTTTTACTCTTCCCCCCACGCTCACGTCCAAA
GCTGGTCTTGGTGTTGGCAGTGGTGGAGGGAGGGATGGGACCACGTCGGC
CGTTGAAGGTGGAAGCACTCACGGAGGTGCTGGATCGCTCATCGGGGCTG
GCCTTGGAGCGGCAGGGAGACCTGGACCCGCCGTCGCGACCGGCGGCGGC
GGCGGCGGTGGTGTTGGTGGTGGTGGTAGTGGTGCGATTGCAGCACATCA
GCAACAGGCAACACTAATGCAGAATTTCGAAGCCTCTACTGCGGCATCTC
GCGCTGCGGCGGCGGCATCGGGGGGTGGGGGAGGCGTTATCGAAGCCGCG
GCAGCGTCCGGTGGAGTAGGGGTAGGGGGTGCTCGAAGTGGTGGGAACAT
GCCTGCCGATCTTCGGCAACCGGCATATCGGCCGCTGGCGGCAGCGCACC
TGCCAGCGCCGGCGCAGTGCCCCCCAGTCCATCCTTTTCCGGGGGGGCGA
TGCGTCCCGCTTCTCCAGCAGGTTCCACAGTATCTTTGCCGGCGGGGACG
GCCGCATCTGGTGCCGGCGCGGGCGCAGGCGACAACGCCATAGGCGGTTT
TACTCTTCCCCCCACGCTCACGTCCAAAGCTGGTCTTGGTGTTGGCAGTG
GTGGAGGGAGGGATGGGACCACGTCGGCCGTTGAAGGTGGAAGCACTCAC
GGAGGTGCTGGATCGCTCATCGGGGCTGGCCTTGGAGCGGCAGGGAGACC
TGGACCCGCCGTCGCGACCGGCGGCGGCGGCGGCGGTGGTGTTGGTGGTG
GTGGTAGTGGTGCGATTGCAGCACATCAGCAACAGGCAACACTAATGCAG
AATTTCGAAGCCTCTACTGCGGCATCTCGCGCTGCGGCGGCGGCATCGGG
GGGTGGGGGAGGCGTTATCGAAGCCGCGGCAGCGTCCGGTGGAGTAGGGG
TAGGGGGTGCTCGAAGTGGTGGGAACATGCCTAACGTGGTGGAACAGCAG
ATGCTCATCCGCCAGCAAAGGCAGATGGCTGCCGCGATGGCCCAACAGCA
GCTGCAGCTTATTCGTCAACAGCAACAGCAACAGCAACAGCAACAGCAAC
AGCAAAACCAGAACCAGAACCAGAACCAGCAGCAACCAACGTGGTGGAAC
AGCAGATGCTCATCCGCCAGCAAAGGCAGATGGCTGCCGCGATGGCCCAA
CAGCAGCTGCAGCTTATTCGTCAACAGCAACAGCAACAGCAACAGCAACA
GCAACAGCAAAACCAGAACCAGAACCAGAACCAGCAGCAACCCGACCCCA
CCACAGCGCTTGCGGGACCGCAGGCATCTTTCGTTCAAAACCTCTGGCTA
GCAGGAGGAATAGGGGTGGGTCCGCATCAGCAAGCAATAACTGCGCTCAG
CCTAACGGCGCAGCAGGAGCAGCAGCAGCAACAACAGCAGCAGGCACAGC
TGCTTGCGTCAAAGGTGTTTCCGAGCAATAACGTCGGTCAACCACGTGCC
GATGCCGTTGGGACTGGGGAAGTGGCGGCGGGGCTGGCGTTGACAGAGTC
TCCCGGTGCTGCGGCTCCTGGCACAGCAGAGATTGGGAGTTTGCAACCTC
AGGGTCGGGGGGGGGGGCAGTCCTTTACAGCATCAGCTGGAGCCGCTGCA
GCTGTCACAAGTTCTGGTAGTGCGCCTATGCCTCTAGACTTTGTTTCGCT
TCAGCAGCAGCAGCAGCAGGAAATCGCGGCCTCCGGCGTCGGCGGGATGA
CGACATTTGGGGCACCTGCCCCATCCGTCGCCAGCGCAGATGGAAGTGTC
TGCGGGGCAACGACTGGCGGCGGCGGTGACGGAAGCAAGACAGTGCGTCC
TCCCCCGACTGGGTCAGGTGTTGGGTTTGCGGGCATTCAACAGACTGTCG
TCGGGGGGACCGCCGACGAACGTGGCACTAGCGGCGGCATGGGTGGCTCA
GCTGATGGTAGAGCAGCGAAAGATGCGGGATCTAGTGCGGCAGAGGGGGC
AGACGGGGACATGTTTCTCCCGTCTCGTCGGCCATTACGGGAGATGGGGG
AATGCGATGACTGGGGGGCTGAGGGTGAAGAGGAGTTCATGAGTATGCTG
AACCTCGCTATGGACGAGCAGCGACCCCACCACAGCGCTTGCGGGACCGC
AGGCATCTTTCGTTCAAAACCTCTGGCTAGCAGGAGGAATAGGGGTGGGT
CCGCATCAGCAAGCAATAACTGCGCTCAGCCTAACGGCGCAGCAGGAGCA
GCAGCAGCAACAACAGCAGCAGGCACAGCTGCTTGCGTCAAAGGTGTTTC
CGAGCAATAACGTCGGTCAACCACGTGCCGATGCCGTTGGGACTGGGGAA
GTGGCGGCGGGGCTGGCGTTGACAGAGTCTCCCGGTGCTGCGGCTCCTGG
CACAGCAGAGATTGGGAGTTTGCAACCTCAGGGTCGGGGGGGGGGGCAGT
CCTTTACAGCATCAGCTGGAGCCGCTGCAGCTGTCACAAGTTCTGGTAGT
GCGCCTATGCCTCTAGACTTTGTTTCGCTTCAGCAGCAGCAGCAGCAGGA
AATCGCGGCCTCCGGCGTCGGCGGGATGACGACATTTGGGGCACCTGCCC
CATCCGTCGCCAGCGCAGATGGAAGTGTCTGCGGGGCAACGACTGGCGGC
GGCGGTGACGGAAGCAAGACAGTGCGTCCTCCCCCGACTGGGTCAGGTGT
TGGGTTTGCGGGCATTCAACAGACTGTCGTCGGGGGGACCGCCGACGAAC
GTGGCACTAGCGGCGGCATGGGTGGCTCAGCTGATGGTAGAGCAGCGAAA
GATGCGGGATCTAGTGCGGCAGAGGGGGCAGACGGGGACATGTTTCTCCC
GTCTCGTCGGCCATTACGGGAGATGGGGGAATGCGATGACTGGGGGGCTG
AGGGTGAAGAGGAGTTCATGAGTATGCTGAACCTCGCTATGGACGAGCAG
CAGGATGCTGAGGCAAGAAGGACAGGAGCCGCATCGATGGCGAGCCTAGA
GGGGTTAGGGTGGGATGACGAAGACGATTTTCATTTCGAAGGTGAACCTT
AACAGGATGCTGAGGCAAGAAGGACAGGAGCCGCATCGATGGCGAGCCTA
GAGGGGTTAGGGTGGGATGACGAAGACGATTTTCATTTCGAAGGTGAACC
TTAA
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