mRNA_H-paniculata_contig28209.7700.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig28209.7700.1
Unique NamemRNA_H-paniculata_contig28209.7700.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig28209.7700.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE)

HSP 1 Score: 397 bits (1019), Expect = 2.240e-121
Identity = 221/493 (44.83%), Postives = 284/493 (57.61%), Query Frame = 1
Query:    1 WCGKIYSGTGVKHDPERIRGLVEMRRPESVGDLMQFLQAVNRMRTALPALEPTIAPLRELMELHMRGT-SRAKRVVARKVITAEEWTENRRAAWRGVRDRLVNAAELH*RKD*WSVLMFPDARDLFWGSFLPQVPTTQVKEGLPVAEIEHEPLGFLSGAFKGLKL-RWATVDKKAFAIVSTFRRLEYLLWDGVEIFCDHRNLAYIFGPDGGSSQV-----------------HSWTI----------------------------AVFAPSTADYTLPGKEVVQDRQDAT-------AQGQPTVVTEVGDAMRGADGLYRVTCRGVPVLWIPRNQHALQARLMACAHMQEAGYQSVDAKVNCLAAYSVWDGMEANVTEFVRQCLHCLDFRSGLRV-------------GEVLHFDFLHLGPSDPLKEHEVIRG-GCPYLLVLLDGVSGYVWLEPALECPAKGAAATVLRWCTVFGAPGVFVSDTALHFKNRLV 1275
            WCGK+YS   V+HDPER+ GL  MRRPE+ G+LMQFLQAVN +RT+LP +   + PLR  +E H+ G  SR KRV   + I A+  T     AW   +D +  A  L       +VLMFPDA D  WGSFL QVP  Q+  G+PV ++ HEP+GFLSG FKG +  RWATVDK+ +AIVSTF+RLEYLLWD V IF DHRNLAYIF P+   S V                 + +TI                            AV+APS  D  +P K+VV+D Q A        A    +  T VG A   A+GL+RV   G  VLWIP    ALQ RLM CAHM+EAG++   A +  L+ Y  W  ME +VT+FV+QCLHC+D ++G +V             GEV+HFD+L++G S PL +  +    G  Y+LV++D +S +VWLEP   C A   A  +L WC + G P V+VSDTA HFKN ++
Sbjct:  955 WCGKVYSEGQVEHDPERLSGLATMRRPETAGELMQFLQAVNWLRTSLPRMAEVVWPLRVFLEQHLVGAKSRTKRVAENRAIAADALTPALVEAWTAAQDLVARAVALSHPSPGCAVLMFPDASDEHWGSFLTQVPQDQLDRGVPVEDMAHEPMGFLSGTFKGAQQQRWATVDKEGYAIVSTFKRLEYLLWDSVHIFTDHRNLAYIFDPEACVSAVAKTTAQRLDQWKAVLGQYDYTIRHISGERNCWGDLLSRWVSVPSVSVRAAAVYAPSEPDAAMPSKQVVRDAQQAARSKLGALAGPASSFSTAVGTATLDAEGLFRVGMNGRDVLWIPDQASALQVRLMVCAHMKEAGHRGAVATLQRLSEYCCWFRMEEHVTDFVKQCLHCMDSKAGEKVPRPLGETVHGTRPGEVVHFDYLYVGASGPLGDDGLDEEEGFKYILVMMDDMSNWVWLEPTGACTACLTAQHLLTWCKILGVPEVWVSDTASHFKNHMM 1447          
BLAST of mRNA_H-paniculata_contig28209.7700.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 395 bits (1015), Expect = 4.600e-121
Identity = 212/489 (43.35%), Postives = 278/489 (56.85%), Query Frame = 1
Query:    1 WCGKIYSGTGVKHDPERIRGLVEMRRPESVGDLMQFLQAVNRMRTALPALEPTIAPLRELMELHMRGT-SRAKRVVARKVITAEEWTENRRAAWRGVRDRLVNAAELH*RKD*WSVLMFPDARDLFWGSFLPQVPTTQVKEGLPVAEIEHEPLGFLSGAFKGLKLRWATVDKKAFAIVSTFRRLEYLLWDGVEIFCDHRNLAYIFGPDGGSSQV-----------------HSWTI----------------------------AVFAPSTADYTLPGKEVVQDRQD----ATAQGQPTVVTEVGDAMRGADGLYRVTCRGVPVLWIPRNQHALQARLMACAHMQEAGYQSVDAKVNCLAAYSVWDGMEANVTEFVRQCLHCLDFRSG-------------LRVGEVLHFDFLHLGPSDPLKEHEVIRG-GCPYLLVLLDGVSGYVWLEPALECPAKGAAATVLRWCTVFGAPGVFVSDTALHFKNRLV 1275
            WCGK+YS   ++HD +R+ GL  +RRPE+ G+LMQFLQAVN +RT+LP +   +APLRE +ELHM G  +R KRV + + I  + WT     +W   +D + NA  L+      +VLMFPDA D  WGSF+ QVP ++V   +PV ++ HEPLGFLSG F+G +LRWATVDK+ FAI+STFRRLEYLLW GV I  DHRNLAYIF P+   S V                 + +TI                            AVF PST D  LP K  +++ Q     +           +G      +GL+RV   G  VLWIP     +Q RLM CAHM+EAG++ V A ++ L  Y  W  M+ +V EFV+QCLHC+D +SG              R GEVLHFD+LH+G S PL    +    G  YLLV++D +S + W+EP   C A+  A  +L WC   G P V+VSDTA HFKN ++
Sbjct:  857 WCGKVYSKGVIEHDRDRLSGLANLRRPETAGELMQFLQAVNWLRTSLPRMSEIVAPLREFLELHMAGNPNRTKRVASNRAIAPDAWTPAMVESWERAQDMVANAVTLYHPVAGKAVLMFPDASDEHWGSFVTQVPQSEVDNNVPVEDMSHEPLGFLSGTFRGSQLRWATVDKEGFAIISTFRRLEYLLWGGVHIHTDHRNLAYIFDPEACISTVPKTTAQRLENWKAVLGQYDYTIQHISGERNCWGDLLSRWVNVPAVSNRSAAVFMPSTPDCNLPSKNAIREVQQTVRASVGDTNACFTDTLGRVAPDDEGLFRVMIDGRKVLWIPDTARDMQLRLMLCAHMKEAGHRGVTATMHRLREYCCWSTMDRDVKEFVQQCLHCMDSKSGEIVPRPFGETVHGKRPGEVLHFDYLHVGKSGPLGADGLDESDGYVYLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVPEVWVSDTATHFKNSVM 1345          
BLAST of mRNA_H-paniculata_contig28209.7700.1 vs. uniprot
Match: A0A6H5JCX8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCX8_9PHAE)

HSP 1 Score: 343 bits (879), Expect = 8.770e-108
Identity = 190/453 (41.94%), Postives = 249/453 (54.97%), Query Frame = 1
Query:  109 LQAVNRMRTALPALEPTIAPLRELMELHMRGT-SRAKRVVARKVITAEEWTENRRAAWRGVRDRLVNAAELH*RKD*WSVLMFPDARDLFWGSFLPQVPTTQVKEGLPVAEIEHEPLGFLSGAFKGLKLRWATVDKKAFAIVSTFRRLEYLLWDGVEIFCDHRNLAYIFGPDGGSSQV-----------------HSWTI----------------------------AVFAPSTADYTLPGKEVVQDRQD----ATAQGQPTVVTEVGDAMRGADGLYRVTCRGVPVLWIPRNQHALQARLMACAHMQEAGYQSVDAKVNCLAAYSVWDGMEANVTEFVRQCLHCLDFRSG-------------LRVGEVLHFDFLHLGPSDPLKEHEVIRG-GCPYLLVLLDGVSGYVWLEPALECPAKGAAATVLRWCTVFGAPGVFVSDTALHFKNRLV 1275
            + AVN +RT+LP +   +APLRE +ELHM G  +R KRV + + I  + WT     +W   +D + NA  L+      +VLMFPDA D  WGSF+ QVP ++V   +PV ++ HEPLGFLSG F+G +LRWATVDK+ FAI+STFRRLEYLLW GV I  DHRNLAYIF P+   S V                 + +TI                            AVF PST D  LP K  +++ Q     +           +G      +GL+RV   G  VLWIP     +Q RLM CAHM+EAG++ V A ++ L  Y  W  M+ +V EFV+QCLHC+D +SG              R GEVLHFD+LH+G S PL    +    G  YLLV++D +S + W+EP   C A+  A  +L WC   G P V+VSDTA HFKN ++
Sbjct:  117 ISAVNWLRTSLPRMSEIVAPLREFLELHMAGNPNRTKRVASNRAIAPDAWTPAMVESWERAQDMVANAVTLYHPVAGKAVLMFPDASDEHWGSFVTQVPQSEVDNNVPVEDMSHEPLGFLSGTFRGSQLRWATVDKEGFAIISTFRRLEYLLWGGVHIHTDHRNLAYIFDPEACISTVPKTTAQRLENWKAVLGQYDYTIQHISGERNCWGDLLSRWVNVPAVSNRSAAVFMPSTPDCNLPSKNAIREVQQTVRASVGDTNACFTDTLGRVAPDDEGLFRVMIDGRKVLWIPDTARDMQLRLMLCAHMKEAGHRGVTATMHRLREYCCWSTMDRDVKEFVQQCLHCMDSKSGEIVPRPFGETVHGKRPGEVLHFDYLHVGKSGPLGADGLDESDGYVYLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVPEVWVSDTATHFKNSVM 569          
BLAST of mRNA_H-paniculata_contig28209.7700.1 vs. uniprot
Match: A0A024TA55_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TA55_9STRA)

HSP 1 Score: 238 bits (606), Expect = 3.200e-66
Identity = 141/436 (32.34%), Postives = 216/436 (49.54%), Query Frame = 1
Query:    1 WCGKIYSGTGVKHDPERIRGLVEMRRPESVGDLMQFLQAVNRMRTALPALEPTIAPLRELMELHMRGTSRAKRVVARKV-ITAEEWTENRRAAWRGVRDRLVNAAELH*RKD*WSVLMFPDARDLFWGSFLPQVPTTQVKEGLPVAEIEHEPLGFLSGAFKGLKLRWATVDKKAFAIVSTFRRLEYLLW--DGVEIFCDHRNLAYIFGPDGGSSQV--------HSWTIAVFAPSTADYTLPGKEVVQDRQDATAQGQPTVVTEVGDAMRGADGLYRVTCRGVPVLWIPRNQHALQARLMACAHMQEAGYQSVDAKVNCLAAYSVWDGMEANVTEFVRQCLHCLDFRSGLRVGEVLHFDFLHLGPSDPLKEHEVIRGGCPYLLVLLDGVSGYVWLEPALECPAKGAAATVLRWCTVFGAPGVFVSDTALHFKNRLV 1275
            WCGKI S  GV H P  +RGL ++  P +  DL QF+ A N MR+++P     + PL  L+++  + +  AK+ V  K+ ++A  W       +  V+  + +       ++  +V +  D  D FWG+    VP   ++  LP++E  HEPL FLSG+F     RW  V+K+AFA+V    RL+YLL    G  +F DHRNL YIF P G S  V          W + +   ST  YT+       +  ++  + +          ++      +   +  P +W+P +    Q RL   AH   AG++ V A    +A    W  ++A+VT FV  CLHC+   S +R  E++HFD+L +  SD          G  ++LV+ DG+SG+V L P+    +   AA ++ W T FG    +VSD   HFKN +V
Sbjct:  363 WCGKIISSAGVTHAPAPVRGLCKLALPTTAVDLQQFICATNWMRSSIPEYSQLVDPLCRLLDVGTKLSRSAKKSVLAKIPVSAMGWAVEHTMCFEDVKKAMTSIVPFSQPREDMAVNLLTDTSDGFWGAIATHVPPENLE--LPLSEQRHEPLAFLSGSFDSASSRWPIVEKEAFAVVEACNRLDYLLIRPGGFRLFTDHRNLVYIFNPRGQSPNVARYQADKLQRWALVM---STFPYTIELVSGDDNLWESPLRHKDFEWPTAHSVLKSQKNGLQDDGQPPPGIWVPDDDLDFQQRLCVIAHQGAAGHRRVAATTQAVATRFEWTNLKADVTGFVTGCLHCMCVDSDMRPNELIHFDWLTMPKSDE---------GLKHVLVVKDGMSGFVRLFPSRTADSTATAAALMDWFTTFGIVATWVSDGGSHFKNEVV 784          
BLAST of mRNA_H-paniculata_contig28209.7700.1 vs. uniprot
Match: A0A6A3Z230_9STRA (RNA-directed DNA polymerase n=12 Tax=Phytophthora TaxID=4783 RepID=A0A6A3Z230_9STRA)

HSP 1 Score: 230 bits (586), Expect = 5.770e-63
Identity = 157/490 (32.04%), Postives = 230/490 (46.94%), Query Frame = 1
Query:    1 WCGKIYSGTGVKHDPERIRGLVEMRRPESVGDLMQFLQAVNRMRTALPALEPTIAPLRELMELHMRGT-SRAKRVVARKVITAEEWTENRRAAWRGVRDRLVNAAELH*RKD*WSVLMFPDARDLFWGSFLPQVPTTQVKEGLPVAEIEHEPLGFLSGAFKGLKLRWATVDKKAFAIVSTFRRLEYLLWD--GVEIFCDHRNLAYIFGP---DGG-----SSQVHSWTIAVFAPSTADYTLPGK--------------EVVQDRQDATAQGQPTVVTEVG-------------------DAMRGA----DGLYRVTCRGVPVL-----WIPRNQHALQARLMACAHMQEAGYQSVDAKVNCLAAYSVWDGMEANVTEFVRQCLHCLDFRSG------------LRVGEVLHFDFLHLGPSDPLKEHEVIRGGCPYLLVLLDGVSGYVWLEPALECPAKGAAATVLRWCTVFGAPGVFVSDTALHFKNRLV 1275
            WCG+I S  GV H PER++GLVEM+RP + G+L QF+ A N MR +LP      A L E ++   +   SR K  +++  +    W +   A++  VR  L+    L        V ++ DA   FWG+ + Q+P  + +   P+AE +H PL FLSG F G   RW+T+ K+A+AIV   RRLEYLL    G  ++ DHRNL YIF P   DG      + ++  W +++ +       +PG               +V +D  +AT   +  VV  V                    DA R A    +G  +   R + V+     WIP +   L+ RL   AH   +G++        L +   W  +  +V  FV +CLHC+   SG             +  E+LHFD+L +   D         GG  Y+LVL DG+SGYV L   L+  A  A   ++ W   FG    +VSD   HF+N++V
Sbjct:  588 WCGRIISADGVTHCPERVQGLVEMQRPRTAGELQQFVCAANWMRQSLPEYSRISAALYEALDRVAQVVGSRKKNQLSKVRLEDVNWGDAEVASFEAVRTALLKMVPLAHPNPTMDVCLYTDASQDFWGAAVTQLPAGEAQR--PLAEQDHRPLAFLSGRFVGAASRWSTIKKEAYAIVEATRRLEYLLLRPRGFRLYTDHRNLVYIFNPYATDGTMARYQADKLQRWALSLMSFQYIIDHVPGDVNVWGDLLSRWGAGQVREDEHEATRVARLAVVERVSPLEDPEFVWPSETEIKAVQDAAREAAQDLEGAQQTGERELMVMPSGQVWIPADAEDLRQRLCVIAHTGASGHRGAQTTQRALESVFYWKTLAVDVAAFVGECLHCMATASGRISRPFGETLVATKPNEILHFDYLSMVEGD---------GGVKYVLVLKDGMSGYVELVACLQATADTACQALIDWFKRFGVVHQWVSDQGAHFRNQIV 1066          
BLAST of mRNA_H-paniculata_contig28209.7700.1 vs. uniprot
Match: A0A6A4ZAT1_9STRA (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZAT1_9STRA)

HSP 1 Score: 224 bits (570), Expect = 2.870e-62
Identity = 156/487 (32.03%), Postives = 218/487 (44.76%), Query Frame = 1
Query:    1 WCGKIYSGTGVKHDPERIRGLVEMRRPESVGDLMQFLQAVNRMRTALPALEPTIAPLRELMELHMRGTSRAKRV-VARKVITAEEWTENRRAAWRGVRDRLVNAAELH*RKD*WSVLMFPDARDLFWGSFLPQVPTTQVKEGLPVAEIEHEPLGFLSGAFKGLKLRWATVDKKAFAIVSTFRRLEYLLW--DGVEIFCDHRNLAYIFGPDGGSS-----QVHSWTIAVFAPSTADYT----------------------LPGKE-------VVQDRQDAT-AQGQPTVVTEVGDAMRGADGL------------YRVTCRGVPVLWIPRNQHALQARLMACAHMQEAGYQSVDAKVNCLAAYSVWDGMEANVTEFVRQCLHCLDFRSGL------------RVGEVLHFDFLHLGPSDPLKEHEVIRGGCPYLLVLLDGVSGYVWLEPALECPAKGAAATVLRWCTVFGAPGVFVSDTALHFKNRLV 1275
            WCGK+ S  G+ H P+R++GL  +  P S  DL QF+ A N MR+++P+    I PLR L+++  +    +K+  +AR  + A  W     A +  V+D L     L        + ++ DA D  WG+   Q+P   ++  LPV +  HEPL FLSG F G   RW TV+K+AFAIV + +RLEYLL    G  +F DHRNL YIF P G +S     Q H         +T  YT                      LP          VV   QD   A   P  + E+  A   A G             Y VT  G   +WIP     LQ R+   AH   AG++ VD     +     W   + ++  FV  CLHCL     +            R  E++HFD+L L P+           G  Y+LV+ D +SG+  L P++   A+  A  ++ W         +VSD A HFKN +V
Sbjct:  271 WCGKVISAEGISHSPDRVQGLCALETPTSGADLQQFVCATNWMRSSIPSYSELIGPLRSLLDVAAKAAGGSKKTALARIKLAAIGWASEHDACFAAVKDTLRQMVPLSHPSADKIICLYTDASDTHWGAACTQIPPEDLE--LPVEQQRHEPLAFLSGGFGGASARWPTVEKEAFAIVESCKRLEYLLLRQQGFRLFTDHRNLLYIFNPLGYNSNMARYQAHKLQRWAMVMTTFPYTVEHVAGEANVWADLLSRWGAAPLPAAVARVRQLIVVSPLQDKDFAWPTPAKILEIQKAAWKAAGEDVPNVTWSVSDGYYVTATGK--IWIPEAAVDLQQRICIIAHQGAAGHRGVDVTTQGVLERFEWRTAKEDLNAFVGSCLHCLCVDGTMVPRPWGAALHAERPNELIHFDWLQLPPAG---------NGWKYVLVVKDDMSGFCRLFPSVTADAESTANALMDWFATHSIVSTWVSDGATHFKNEVV 744          
BLAST of mRNA_H-paniculata_contig28209.7700.1 vs. uniprot
Match: A0A6A4CL72_9STRA (Uncharacterized protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4CL72_9STRA)

HSP 1 Score: 223 bits (568), Expect = 8.570e-61
Identity = 152/490 (31.02%), Postives = 227/490 (46.33%), Query Frame = 1
Query:    1 WCGKIYSGTGVKHDPERIRGLVEMRRPESVGDLMQFLQAVNRMRTALPALEPTIAPLRELMELHMRGT-SRAKRVVARKVITAEEWTENRRAAWRGVRDRLVNAAELH*RKD*WSVLMFPDARDLFWGSFLPQVPTTQVKEGLPVAEIEHEPLGFLSGAFKGLKLRWATVDKKAFAIVSTFRRLEYLLWD--GVEIFCDHRNLAYIFGP---DGG-----SSQVHSWTIAVFAPSTADYTLPGK--------------EVVQDRQDATAQGQPTVVTEVG-------------------DAMRGAD---------GLYRVTCRGVPVLWIPRNQHALQARLMACAHMQEAGYQSVDAKVNCLAAYSVWDGMEANVTEFVRQCLHCLDFRSG------------LRVGEVLHFDFLHLGPSDPLKEHEVIRGGCPYLLVLLDGVSGYVWLEPALECPAKGAAATVLRWCTVFGAPGVFVSDTALHFKNRLV 1275
            WCG+I S  GV H PER++ LV+M+RP + G+L QF+ A N MR +LP      A L E ++   +   SR K  +++  +    W +   A++  VR  L+    L        V ++ DA   FWG+ + Q+P  + +   P+AE +H PL FLSG F G + RW+T++K+A+AIV   RRLEYLL    G  ++ DHRNL YIF P   DG      + ++  W +++ +       +PG+              +V +D  +AT   +  VV  V                    DA R A          G   +       +WIP +   L+ RL   AH   +G++        L +   W  +  +V  FV +C HC+   SG             +  E+LHFD+L +   D         GG  Y+LVL DG+SGYV L   L+  A  A   ++ W   FG    +VSD   HF+N++V
Sbjct:  274 WCGRIISADGVTHCPERVQCLVKMQRPRTAGELQQFVCAANWMRQSLPEYSRISAALYEALDRAAQVVDSRKKNQLSKVRLEYVNWGDAEVASFEAVRTALLKMVPLAHPNPTMDVCLYTDASQDFWGAAVTQLPAGEAQR--PLAEQDHRPLAFLSGRFVGAESRWSTIEKEAYAIVEATRRLEYLLLRPRGFRLYTDHRNLVYIFNPYATDGTMARYQADKLQRWALSLMSFQYIIEHVPGEVNVWGDLLSRWGAGQVREDEHEATRVARLAVVERVSPLEDPEFVWPSEAEIKAVQDAAREAGQDLEEAQQTGERELMVMSSGQVWIPADAEDLRQRLCVIAHAGASGHRGAQTTQRALESVFYWKTLAVDVAAFVGECQHCMATASGRIPRPFGETLVATKPNEILHFDYLSMVEGD---------GGVKYVLVLKDGMSGYVELVVCLQATADTAYQALIDWFKRFGVVHQWVSDQGAHFRNQIV 752          
BLAST of mRNA_H-paniculata_contig28209.7700.1 vs. uniprot
Match: H3H555_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H555_PHYRM)

HSP 1 Score: 222 bits (565), Expect = 1.040e-60
Identity = 160/490 (32.65%), Postives = 228/490 (46.53%), Query Frame = 1
Query:    1 WCGKIYSGTGVKHDPERIRGLVEMRRPESVGDLMQFLQAVNRMRTALPALEPTIAPLRELMELHMR-GTSRAKRVVARKVITAEEWTENRRAAWRGVRDRLVNAAELH*RKD*WSVLMFPDARDLFWGSFLPQVPTTQVKEGLPVAEIEHEPLGFLSGAFKGLKLRWATVDKKAFAIVSTFRRLEYLLWD--GVEIFCDHRNLAYIFGP---DG-----GSSQVHSWTIAVFAPSTADYTLPGKE--------------VVQDRQDATAQGQPTVVTEVGD---------------AMRGADGL-------------YRVTCRGVPVLWIPRNQHALQARLMACAHMQEAGYQSVDAKVNCLAAYSVWDGMEANVTEFVRQCLHCLDFRSG------------LRVGEVLHFDFLHLGPSDPLKEHEVIRGGCPYLLVLLDGVSGYVWLEPALECPAKGAAATVLRWCTVFGAPGVFVSDTALHFKNRLV 1275
            WCG++ S  GV+H PERI+GLVEM+ P++ GDL QFL AVN MR ++P      A L + ++   +   SR K  +AR  +    W  +  A    VRD L+N   L        + ++ DA + +WG+ +  +   ++K  LP AE  H PL FLSG F G   RW T++K+AFAIV   RRLEYLL    G  +F DHRNL YIF P   DG      + ++  W +A+ +       +PG+E               ++  + A    +  VV  V                 A++ A G               ++T  G   +WIP +   LQ RL   AH   +G++   A +  L+    W  M  +VT FV +CLHC+    G             R  EVLHFDFL +  S           G  Y+LVL DG+SG+V L       +  A   ++ W   FG    +VSD   HF+N++V
Sbjct:  147 WCGRMISAQGVRHCPERIQGLVEMQAPQTAGDLQQFLCAVNWMRQSIPEFTRITAVLYDALDRAAQIAGSRKKVKLARVRLEDVSWGADEMAGVEAVRDALLNMVPLAHPSPTADLCLYSDASNDYWGAVVTMLDPEELK--LPRAEQHHRPLAFLSGRFVGAAQRWPTIEKEAFAIVEAVRRLEYLLLRPRGFHLFTDHRNLVYIFNPYATDGMMARYQADKLQRWALALMSFRYVIEHVPGEENAWGDLLSRWGAGPPLEATRTAIRAARLAVVERVSPLEEADFVWPSEQEIRAVQQAAGAAAHPGVQWNEERQLQMTSTGQ--VWIPPDSGELQQRLCVVAHAGASGHRGAAATLKSLSTCFFWPTMGPDVTTFVNECLHCMVAAGGRIPRPFGETLRATRPNEVLHFDFLTMIMS---------TSGVKYVLVLKDGMSGFVELLACTHATSDHAYQGLIDWFKRFGVVHQWVSDQGAHFRNQVV 623          
BLAST of mRNA_H-paniculata_contig28209.7700.1 vs. uniprot
Match: A0A6A3I3R6_9STRA (Uncharacterized protein n=3 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3I3R6_9STRA)

HSP 1 Score: 221 bits (563), Expect = 2.740e-60
Identity = 152/486 (31.28%), Postives = 228/486 (46.91%), Query Frame = 1
Query:    1 WCGKIYSGTGVKHDPERIRGLVEMRRPESVGDLMQFLQAVNRMRTALPALEPTIAPLRELMELHMR-GTSRAKRVVARKVITAEEWTENRRAAWRGVRDRLVNAAELH*RKD*WSVLMFPDARDLFWGSFLPQVPTTQVKEGLPVAEIEHEPLGFLSGAFKGLKLRWATVDKKAFAIVSTFRRLEYLLWD--GVEIFCDHRNLAYIFGP---DGG-----SSQVHSWTIAVFAPSTADYTLPGKE--------------VVQDRQDATAQGQPTVVTEVG-------------------DAMRGADGLYRVTCRG-----VPVLWIPRNQHALQARLMACAHMQEAGYQSVDAKVNCLAAYSVWDGMEANVTEFVRQCLHCLDFRSG------------LRVGEVLHFDFLHLGPSDPLKEHEVIRGGCPYLLVLLDGVSGYVWLEPALECPAKGAAATVLRWCTVFGAPGVFVSDTALHFKNRLV 1275
            WCG+I S  GVKH PERI+GLV+M+ P + G+L QF+ A N MR ++P      A L E +E   +   SR +  +A+  +    W +   +++  VR  L+    L   +    V ++ DA   FWG+ L Q+   + +  LP+ E +H+PL FLSG F G   RW+T++K+AFAIV   RRLEYLL    G  ++ DHRNL YIF P   DG      + ++  W +++ +       +PG+E              V++    A    +  VV  V                    +A R +  +   T        +  ++IP +   LQ RL   AH   +G++   A    L A   W  + A+V  FV  CLHC+   SG             +  E+LHFD+L +   +         GG  Y+LVL DG+SGYV L   L+  A  A   ++ W   FG    + SD   HF+N+++
Sbjct:  252 WCGRIISAEGVKHCPERIQGLVDMQPPRTAGELQQFVCAANWMRQSIPEYSRLSAALYEALERAAQVAGSRKQNKLAKVRLDEVGWHDTEASSFEAVRAALLRMVPLAHPRPTAEVCLYTDASQDFWGAVLTQLKPGEAE--LPLTEQQHQPLAFLSGRFVGASSRWSTIEKEAFAIVEATRRLEYLLLRPAGFRLYTDHRNLVYIFNPYATDGAMARYRADKLQRWALSLMSFKYVIEHVPGEENVWGDLLSRWGAGQVLEAHHGAVRVARLAVVQRVSPLEEPEFVWPSESEIRASQEAARASGQIMTGTQLDDEHHLLVTVYIPDDAADLQQRLCVVAHAGASGHRGGRATQQALEAVFYWSSLGADVAAFVNGCLHCMTTASGRIPRPFGETLVATKPNELLHFDYLTMVEGE---------GGLKYVLVLKDGMSGYVELVARLQATADTAYRALIDWFKRFGVVHQWASDQGAHFRNQII 726          
BLAST of mRNA_H-paniculata_contig28209.7700.1 vs. uniprot
Match: H3H4S7_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H4S7_PHYRM)

HSP 1 Score: 222 bits (566), Expect = 2.790e-60
Identity = 160/490 (32.65%), Postives = 228/490 (46.53%), Query Frame = 1
Query:    1 WCGKIYSGTGVKHDPERIRGLVEMRRPESVGDLMQFLQAVNRMRTALPALEPTIAPLRELMELHMR-GTSRAKRVVARKVITAEEWTENRRAAWRGVRDRLVNAAELH*RKD*WSVLMFPDARDLFWGSFLPQVPTTQVKEGLPVAEIEHEPLGFLSGAFKGLKLRWATVDKKAFAIVSTFRRLEYLLWD--GVEIFCDHRNLAYIFGP---DG-----GSSQVHSWTIAVFAPSTADYTLPGKE--------------VVQDRQDATAQGQPTVVTEVGD---------------AMRGADGL-------------YRVTCRGVPVLWIPRNQHALQARLMACAHMQEAGYQSVDAKVNCLAAYSVWDGMEANVTEFVRQCLHCLDFRSG------------LRVGEVLHFDFLHLGPSDPLKEHEVIRGGCPYLLVLLDGVSGYVWLEPALECPAKGAAATVLRWCTVFGAPGVFVSDTALHFKNRLV 1275
            WCG++ S  GV+H PERI+GLVEM+ P++ GDL QFL AVN MR ++P      A L + ++   +   SR K  +AR  +    W  +  A    VRD L+N   L        + ++ DA + +WG+ +  +   ++K  LP AE  H PL FLSG F G   RW T++K+AFAIV   RRLEYLL    G  +F DHRNL YIF P   DG      + ++  W +A+ +       +PG+E               ++  + A    +  VV  V                 A++ A G               ++T  G   +WIP +   LQ RL   AH   +G++   A +  L+    W  M  +VT FV +CLHC+    G             R  EVLHFDFL +  S           G  Y+LVL DG+SG+V L       +  A   ++ W   FG    +VSD   HF+N++V
Sbjct:  875 WCGRMISAQGVRHCPERIQGLVEMQAPQTAGDLQQFLCAVNWMRQSIPEFTRITAVLYDALDRAAQIAGSRKKVKLARVRLEDVSWGADEMAGVEAVRDALLNMVPLAHPSPTADLCLYSDASNDYWGAVVTMLDPEELK--LPRAEQHHRPLAFLSGRFVGAAQRWPTIEKEAFAIVEAVRRLEYLLLRPRGFHLFTDHRNLVYIFNPYATDGMMARYQADKLQRWALALMSFRYVIEHVPGEENAWGDLLSRWGAGPPLEATRTAIRAARLAVVERVSPLEEADFVWPSEQEIRAVQQAAGAAAHPGVQWNEERQLQMTSTGQ--VWIPPDSGELQQRLCVVAHAGASGHRGAAATLKSLSTCFFWPTMGPDVTTFVNECLHCMVAAGGRIPRPFGETLRATRPNEVLHFDFLTMIES---------TSGVKYVLVLKDGMSGFVELLACTHATSDHAYQGLIDWFKRFGVVHQWVSDQGAHFRNQVV 1351          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28209.7700.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K5A5_9PHAE2.240e-12144.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7F6_9PHAE4.600e-12143.35Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCX8_9PHAE8.770e-10841.94Integrase catalytic domain-containing protein n=1 ... [more]
A0A024TA55_9STRA3.200e-6632.34Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A6A3Z230_9STRA5.770e-6332.04RNA-directed DNA polymerase n=12 Tax=Phytophthora ... [more]
A0A6A4ZAT1_9STRA2.870e-6232.03Integrase catalytic domain-containing protein (Fra... [more]
A0A6A4CL72_9STRA8.570e-6131.02Uncharacterized protein n=1 Tax=Phytophthora rubi ... [more]
H3H555_PHYRM1.040e-6032.65Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A6A3I3R6_9STRA2.740e-6031.28Uncharacterized protein n=3 Tax=Phytophthora rubi ... [more]
H3H4S7_PHYRM2.790e-6032.65Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig28209contigH-paniculata_contig28209:1724..3198 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score156.8
Seed ortholog evalue1.7e-35
Seed eggNOG ortholog164328.Phyra85588
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QEWS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons3
Model size1275
Cds size927
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig28209.7700.1prot_H-paniculata_contig28209.7700.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig28209 2072..3198 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929856.3186324-UTR-H-paniculata_contig28209:1723..20711622929856.3186324-UTR-H-paniculata_contig28209:1723..2071Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28209 1724..2071 +
1691481041.734182-UTR-H-paniculata_contig28209:1723..20711691481041.734182-UTR-H-paniculata_contig28209:1723..2071Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28209 1724..2071 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929856.3326275-CDS-H-paniculata_contig28209:2071..23361622929856.3326275-CDS-H-paniculata_contig28209:2071..2336Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28209 2072..2336 +
1691481041.746704-CDS-H-paniculata_contig28209:2071..23361691481041.746704-CDS-H-paniculata_contig28209:2071..2336Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28209 2072..2336 +
1622929856.347946-CDS-H-paniculata_contig28209:2497..29041622929856.347946-CDS-H-paniculata_contig28209:2497..2904Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28209 2498..2904 +
1691481041.759101-CDS-H-paniculata_contig28209:2497..29041691481041.759101-CDS-H-paniculata_contig28209:2497..2904Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28209 2498..2904 +
1622929856.3804698-CDS-H-paniculata_contig28209:2943..31981622929856.3804698-CDS-H-paniculata_contig28209:2943..3198Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28209 2944..3198 +
1691481041.7739236-CDS-H-paniculata_contig28209:2943..31981691481041.7739236-CDS-H-paniculata_contig28209:2943..3198Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28209 2944..3198 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig28209.7700.1

>prot_H-paniculata_contig28209.7700.1 ID=prot_H-paniculata_contig28209.7700.1|Name=mRNA_H-paniculata_contig28209.7700.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=309bp
MFPDARDLFWGSFLPQVPTTQVKEGLPVAEIEHEPLGFLSGAFKGLKLRW
ATVDKKAFAIVSTFRRLEYLLWDGVEIFCDHRNLAYIFGPDGGSSQVHSW
TIAVFAPSTADYTLPGKEVVQDRQDATAQGQPTVVTEVGDAMRGADGLYR
VTCRGVPVLWIPRNQHALQARLMACAHMQEAGYQSVDAKVNCLAAYSVWD
GMEANVTEFVRQCLHCLDFRSGLRVGEVLHFDFLHLGPSDPLKEHEVIRG
GCPYLLVLLDGVSGYVWLEPALECPAKGAAATVLRWCTVFGAPGVFVSDT
ALHFKNRLV
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mRNA from alignment at H-paniculata_contig28209:1724..3198+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig28209.7700.1 ID=mRNA_H-paniculata_contig28209.7700.1|Name=mRNA_H-paniculata_contig28209.7700.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1475bp|location=Sequence derived from alignment at H-paniculata_contig28209:1724..3198+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGTGTGGCAAGATCTACTCGGGGACCGGCGTGAAGCACGACCCGGAGCG GATCCGGGGTTTAGTGGAGATGCGGAGGCCGGAGAGCGTTGGCGACCTGA TGCAGTTCCTGCAAGCCGTGAACCGGATGCGGACTGCGCTCCCCGCGCTG GAACCCACGATCGCCCCGCTACGGGAGCTGATGGAGCTTCACATGCGGGG GACTAGCCGTGCCAAGCGCGTGGTGGCGCGCAAGGTTATCACGGCCGAAG AATGGACGGAAAACCGTCGTGCGGCTTGGAGGGGCGTGCGGGACCGTCTG GTGAACGCAGCGGAGCTGCACTAAAGGAAGGATTGATGGAGCGTTCTCAT GTTTCCGGATGCGAGAGACCTGTTCTGGGGGAGTTTTCTCCCCCAGGTTC CCACCACGCAGGTAAAGGAGGGCTTGCCGGTGGCGGAGATAGAGCATGAG CCGCTGGGGTTCCTCAGCGGCGCATTCAAGGGCTTGAAGCTGCGTTGGGC CACGGTGGACAAGAAGGCGTTCGCGATTGTGAGCACGTTCCGTCGGCTAG AATATCTGCTGTGGGATGGGGTGGAGATTTTCTGCGACCATCGCAACCTG GCATACATCTTTGGTGCCGCCAGCAACGAGCCCCTTCCAAGGCCACCGCC CAACGACTGCTGCACTGGCAGATGTTTCTCGGATAGTTCCGTTACCGCAT CCAGCATATTCCTCGTGTGGAAAACCTGTGGGGGGACATGCTGTCGAGGA GGAGGGCGGTAGAAGCCGACGGAGGGCCGGACGGCGGGAGTTCGCAGGTG CACTCGTGGACCATCGCGGTGTTTGCACCTTCTACAGCGGACTACACGCT GCCCGGCAAGGAGGTGGTGCAAGACCGGCAAGACGCGACCGCACAGGGGC AGCCGACGGTGGTTACCGAGGTGGGTGATGCGATGCGCGGGGCTGATGGT CTGTACCGGGTGACGTGTCGAGGGGTGCCTGTGCTGTGGATTCCCCGTAA CCAGCACGCGCTGCAGGCGCGGCTCATGGCATGCGCCCACATGCAGGAGG CGGGCTACCAGAGCGTGGACGCTAAGGTCAACTGCCTTGCGGCATACTCC GTGTGGGACGGGATGGAGGCGAACGTGACGGAGTTTGTCCGGCAGTGTTT GCACTGTTTGGATTTCAGGTCAGGGTTGCGGGTGTCCCGCCCGTTAGGCG AGCTGTTGTACGGCACGGAGGTGGGGGAGGTACTTCACTTCGACTTCCTC CATCTGGGCCCGAGCGACCCGCTCAAGGAGCACGAGGTGATCCGCGGGGG CTGCCCGTACCTTCTCGTGTTGCTGGATGGCGTCAGCGGTTACGTGTGGC TAGAGCCGGCGTTGGAATGCCCGGCGAAAGGGGCTGCCGCCACCGTGTTG AGGTGGTGCACGGTATTTGGAGCGCCTGGGGTGTTCGTCAGCGATACCGC CCTTCACTTCAAGAACCGACTGGTC
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Coding sequence (CDS) from alignment at H-paniculata_contig28209:1724..3198+

>mRNA_H-paniculata_contig28209.7700.1 ID=mRNA_H-paniculata_contig28209.7700.1|Name=mRNA_H-paniculata_contig28209.7700.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1854bp|location=Sequence derived from alignment at H-paniculata_contig28209:1724..3198+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTTCCGGATGCGAGAGACCTGTTCTGGGGGAGTTTTCTCCCCCAGGT
TCCCACCACGCAGGTAAAGGAGGGCTTGCCGGTGGCGGAGATAGAGCATG
AGCCGCTGGGGTTCCTCAGCGGCGCATTCAAGGGCTTGAAGCTGCGTTGG
GCCACGGTGGACAAGAAGGCGTTCGCGATTGTGAGCACGTTCCGTCGGCT
AGAATATCTGCTGTGGGATGGGGTGGAGATTTTCTGCGACCATCGCAACC
TGGCATACATCTTTGATGTTTCCGGATGCGAGAGACCTGTTCTGGGGGAG
TTTTCTCCCCCAGGTTCCCACCACGCAGGTAAAGGAGGGCTTGCCGGTGG
CGGAGATAGAGCATGAGCCGCTGGGGTTCCTCAGCGGCGCATTCAAGGGC
TTGAAGCTGCGTTGGGCCACGGTGGACAAGAAGGCGTTCGCGATTGTGAG
CACGTTCCGTCGGCTAGAATATCTGCTGTGGGATGGGGTGGAGATTTTCT
GCGACCATCGCAACCTGGCATACATCTTTGGGCCGGACGGCGGGAGTTCG
CAGGTGCACTCGTGGACCATCGCGGTGTTTGCACCTTCTACAGCGGACTA
CACGCTGCCCGGCAAGGAGGTGGTGCAAGACCGGCAAGACGCGACCGCAC
AGGGGCAGCCGACGGTGGTTACCGAGGTGGGTGATGCGATGCGCGGGGCT
GATGGTCTGTACCGGGTGACGTGTCGAGGGGTGCCTGTGCTGTGGATTCC
CCGTAACCAGCACGCGCTGCAGGCGCGGCTCATGGCATGCGCCCACATGC
AGGAGGCGGGCTACCAGAGCGTGGACGCTAAGGTCAACTGCCTTGCGGCA
TACTCCGTGTGGGACGGGATGGAGGCGAACGTGACGGAGTTTGTCCGGCA
GTGTTTGCACTGTTTGGATTTCAGGTCAGGGTTGCGGGGCCGGACGGCGG
GAGTTCGCAGGTGCACTCGTGGACCATCGCGGTGTTTGCACCTTCTACAG
CGGACTACACGCTGCCCGGCAAGGAGGTGGTGCAAGACCGGCAAGACGCG
ACCGCACAGGGGCAGCCGACGGTGGTTACCGAGGTGGGTGATGCGATGCG
CGGGGCTGATGGTCTGTACCGGGTGACGTGTCGAGGGGTGCCTGTGCTGT
GGATTCCCCGTAACCAGCACGCGCTGCAGGCGCGGCTCATGGCATGCGCC
CACATGCAGGAGGCGGGCTACCAGAGCGTGGACGCTAAGGTCAACTGCCT
TGCGGCATACTCCGTGTGGGACGGGATGGAGGCGAACGTGACGGAGTTTG
TCCGGCAGTGTTTGCACTGTTTGGATTTCAGGTCAGGGTTGCGGGTGGGG
GAGGTACTTCACTTCGACTTCCTCCATCTGGGCCCGAGCGACCCGCTCAA
GGAGCACGAGGTGATCCGCGGGGGCTGCCCGTACCTTCTCGTGTTGCTGG
ATGGCGTCAGCGGTTACGTGTGGCTAGAGCCGGCGTTGGAATGCCCGGCG
AAAGGGGCTGCCGCCACCGTGTTGAGGTGGTGCACGGTATTTGGAGCGCC
TGGGGTGTTCGTCAGCGATACCGCCCTTCACTTCAAGAACCGACTGGTCG
TGGGGGAGGTACTTCACTTCGACTTCCTCCATCTGGGCCCGAGCGACCCG
CTCAAGGAGCACGAGGTGATCCGCGGGGGCTGCCCGTACCTTCTCGTGTT
GCTGGATGGCGTCAGCGGTTACGTGTGGCTAGAGCCGGCGTTGGAATGCC
CGGCGAAAGGGGCTGCCGCCACCGTGTTGAGGTGGTGCACGGTATTTGGA
GCGCCTGGGGTGTTCGTCAGCGATACCGCCCTTCACTTCAAGAACCGACT
GGTC
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