mRNA_H-paniculata_contig28203.7699.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig28203.7699.1
Unique NamemRNA_H-paniculata_contig28203.7699.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28203.7699.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig28203contigH-paniculata_contig28203:41..1825 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size305
Cds size252
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig28203.7699.1prot_H-paniculata_contig28203.7699.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig28203 92..1825 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929856.234796-UTR-H-paniculata_contig28203:40..911622929856.234796-UTR-H-paniculata_contig28203:40..91Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28203 41..91 -
1691481041.7001126-UTR-H-paniculata_contig28203:40..911691481041.7001126-UTR-H-paniculata_contig28203:40..91Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig28203 41..91 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929856.256703-CDS-H-paniculata_contig28203:91..3211622929856.256703-CDS-H-paniculata_contig28203:91..321Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28203 92..321 -
1691481041.7130759-CDS-H-paniculata_contig28203:91..3211691481041.7130759-CDS-H-paniculata_contig28203:91..321Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28203 92..321 -
1622929856.2727015-CDS-H-paniculata_contig28203:1803..18251622929856.2727015-CDS-H-paniculata_contig28203:1803..1825Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28203 1804..1825 -
1691481041.7250416-CDS-H-paniculata_contig28203:1803..18251691481041.7250416-CDS-H-paniculata_contig28203:1803..1825Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28203 1804..1825 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig28203.7699.1

>prot_H-paniculata_contig28203.7699.1 ID=prot_H-paniculata_contig28203.7699.1|Name=mRNA_H-paniculata_contig28203.7699.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=84bp
STAPTTQVKRYRYFGVLFGTPSEPPERFCQNLVGQEYGNHHARCHVEIAT
QGGQEHFCGRALPSALGKERCVKIWLPSQSQRQ*
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mRNA from alignment at H-paniculata_contig28203:41..1825-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig28203.7699.1 ID=mRNA_H-paniculata_contig28203.7699.1|Name=mRNA_H-paniculata_contig28203.7699.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1785bp|location=Sequence derived from alignment at H-paniculata_contig28203:41..1825- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCAACTGCCCCTACAACACAAGGTTCGCGAGACTGGAACCTAGGTCAATC
TTTTGTGTATCGATTGGATCTTATATCACCTGAGTTTACAGCATCTAATA
GGGCGGAGGTAACGGCATAAACAACTCCAACAATGTACAAACCGGTCAAA
GATGTGCACAACAGTCTAGGAAGTGTTACCGATGCAACAGCGCTGAACAC
CTAATTGTCGATTGCACAGCAGTAATTGTACCAGCGCCGCAAACAAGTAC
AGCTTCGTTAGCAGCAACGATCAATCAATTGCCTGCAGTAGGATTGATGG
TACAAGCCAACGGCAGAATACCTTGTGAGAAACTTGTTTCCAACGACGAA
TTGTGGGTTAGTGATCGTAGCGCAAGGTATCACATGACAGGTTCGCCGTT
GCATATGTTCGATTATGTGCACAATAGAGACCGTACACATAGCACTAGGG
AGCGCAGAAATTGTTGGTTTCGATAGTTTGAATGTGGTTTTTCGAAGTGA
AGGGGGAGATGTGGACATCATTTTACGTAGTGTCGCATATTTTCCGTTTC
TGAGCAATTTGTTCTCTTCGACAGCTTTGGGAGATGAAGGAGTGGATAGT
CTCAAAAGTGAAGAAGGAATCTCCTCTATTGATGGTGGTCTCAAATTTGT
GCGAAGAGGTGGTGGCAGATCGCTGTTGGGTCACAGACTACCGCATGTAA
CAGCTGCACCTGTACTTGCCGCAGGACTTCCTTCCGGCCATGTCGAACCA
ATAGACATCAACGACTTTCATTGCGCATATGGCCATTCCCATGAAGGATT
GCTACGAGAAACTGCGAAGCGTCTAAGTGTAAAGCTTGCTGGTTGTTTGC
AGCCATGCGAAGGATGTTCCATGACAAGAGGATATCGAAAGGGTATACCA
TCAGTAACGAAAGTGAGGGGCACGAAGAAGTTGGGCTGAAGTTCCGTGGA
TTTGAGAGGTCCCAAACCAGAACCAAGCATCGGAGATGCACATTACACAC
TGATCGTAAAGGATGATTACAGTAGGTGTACATGGACGTACTTCTTGAAA
AAGAAAAGCGAAGCGGCGTTCATGTTCAAGGCTTTCATGGCTTATGTGAA
TGGGAATGGGAAGGTACAAATTGTCCGATCAGATGATTGTGGGTAATCCA
GAGATGGAGATTTTCATAAGATGTATGTTGAGAACTACTATATCAGGCAA
GAGTTCACCAGCGCAAAAGCCCTCAATTTAATGGGGTGGCTGACCGATCA
TTAGGCATTATTCAGTCAGTAGCGCTTGAAGCCCGAATACAGGCCCCACC
CCACTCCTTTTTCCAGATTTGACGTTGCCTACCGCGGAGTCGCTGTGAGC
AGAGGCAGTACATTGACTGTTTGACGCTCTCAACCGCACATTTACTGCTG
GGAATGATACTAGTAAGAGTCCCAATGAGGTTTGGCATGGGAGGGTGGTA
AACCTTCTTTTGCTGCCTTTCCTTCGACGTTGTTTTTATCGAATTTTGTG
GCAGTCAAGCGCTATCGCTATTTTGGGGTACTATTTGGGACCCCCTCGGA
ACCACCCGAGAGATTCTGTCAGAATTTGGTCGGCCAAGAATACGGCAATC
ATCACGCGAGATGTCACGTGGAGATCGCCACTCAGGGAGGGCAGGAACAC
TTCTGTGGTAGAGCCCTTCCCTCTGCGCTGGGGAAGGAGAGGTGTGTAAA
AATATGGCTTCCTAGCCAGAGTCAACGACAGTAGTGCGTAAGCGTTGTAG
CGTGAAGTGAAGTGGCAACACTTGGTGTTAAGAGA
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Coding sequence (CDS) from alignment at H-paniculata_contig28203:41..1825-

>mRNA_H-paniculata_contig28203.7699.1 ID=mRNA_H-paniculata_contig28203.7699.1|Name=mRNA_H-paniculata_contig28203.7699.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=504bp|location=Sequence derived from alignment at H-paniculata_contig28203:41..1825- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCAACTGCCCCTACAACACAAGTCAACTGCCCCTACAACACAAGTCAAGC
GCTATCGCTATTTTGGGGTACTATTTGGGACCCCCTCGGAACCACCCGAG
AGATTCTGTCAGAATTTGGTCGGCCAAGAATACGGCAATCATCACGCGAG
ATGTCACGTGGAGATCGCCACTCAGGGAGGGCAGGAACACTTCTGTGGTA
GAGCCCTTCCCTCTGCGCTGGGGAAGGAGAGGTGTGTAAAAATATGGCTT
CCTAGCCAGAGTCAACGACAGTAGTCAAGCGCTATCGCTATTTTGGGGTA
CTATTTGGGACCCCCTCGGAACCACCCGAGAGATTCTGTCAGAATTTGGT
CGGCCAAGAATACGGCAATCATCACGCGAGATGTCACGTGGAGATCGCCA
CTCAGGGAGGGCAGGAACACTTCTGTGGTAGAGCCCTTCCCTCTGCGCTG
GGGAAGGAGAGGTGTGTAAAAATATGGCTTCCTAGCCAGAGTCAACGACA
GTAG
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