mRNA_H-paniculata_contig2819.7693.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2819.7693.1
Unique NamemRNA_H-paniculata_contig2819.7693.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2819.7693.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2819contigH-paniculata_contig2819:13668..17366 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons7
Model size666
Cds size549
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929855.0763626-UTR-H-paniculata_contig2819:13667..137521622929855.0763626-UTR-H-paniculata_contig2819:13667..13752Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2819 13668..13752 +
1691481041.1490705-UTR-H-paniculata_contig2819:13667..137521691481041.1490705-UTR-H-paniculata_contig2819:13667..13752Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2819 13668..13752 +
1622929855.2049677-UTR-H-paniculata_contig2819:17334..173661622929855.2049677-UTR-H-paniculata_contig2819:17334..17366Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2819 17335..17366 +
1691481041.2448323-UTR-H-paniculata_contig2819:17334..173661691481041.2448323-UTR-H-paniculata_contig2819:17334..17366Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2819 17335..17366 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929855.0912814-CDS-H-paniculata_contig2819:13752..137591622929855.0912814-CDS-H-paniculata_contig2819:13752..13759Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2819 13753..13759 +
1691481041.157985-CDS-H-paniculata_contig2819:13752..137591691481041.157985-CDS-H-paniculata_contig2819:13752..13759Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2819 13753..13759 +
1622929855.1119347-CDS-H-paniculata_contig2819:14151..142621622929855.1119347-CDS-H-paniculata_contig2819:14151..14262Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2819 14152..14262 +
1691481041.1678703-CDS-H-paniculata_contig2819:14151..142621691481041.1678703-CDS-H-paniculata_contig2819:14151..14262Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2819 14152..14262 +
1622929855.1258452-CDS-H-paniculata_contig2819:14594..146841622929855.1258452-CDS-H-paniculata_contig2819:14594..14684Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2819 14595..14684 +
1691481041.1776257-CDS-H-paniculata_contig2819:14594..146841691481041.1776257-CDS-H-paniculata_contig2819:14594..14684Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2819 14595..14684 +
1622929855.14226-CDS-H-paniculata_contig2819:15078..151891622929855.14226-CDS-H-paniculata_contig2819:15078..15189Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2819 15079..15189 +
1691481041.1973162-CDS-H-paniculata_contig2819:15078..151891691481041.1973162-CDS-H-paniculata_contig2819:15078..15189Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2819 15079..15189 +
1622929855.156316-CDS-H-paniculata_contig2819:15548..156501622929855.156316-CDS-H-paniculata_contig2819:15548..15650Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2819 15549..15650 +
1691481041.2154675-CDS-H-paniculata_contig2819:15548..156501691481041.2154675-CDS-H-paniculata_contig2819:15548..15650Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2819 15549..15650 +
1622929855.1715212-CDS-H-paniculata_contig2819:16152..162601622929855.1715212-CDS-H-paniculata_contig2819:16152..16260Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2819 16153..16260 +
1691481041.2283483-CDS-H-paniculata_contig2819:16152..162601691481041.2283483-CDS-H-paniculata_contig2819:16152..16260Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2819 16153..16260 +
1622929855.192145-CDS-H-paniculata_contig2819:17314..173341622929855.192145-CDS-H-paniculata_contig2819:17314..17334Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2819 17315..17334 +
1691481041.2366464-CDS-H-paniculata_contig2819:17314..173341691481041.2366464-CDS-H-paniculata_contig2819:17314..17334Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2819 17315..17334 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2819.7693.1prot_H-paniculata_contig2819.7693.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2819 13753..17334 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2819.7693.1

>prot_H-paniculata_contig2819.7693.1 ID=prot_H-paniculata_contig2819.7693.1|Name=mRNA_H-paniculata_contig2819.7693.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=183bp
MNLCLVPPTEPTCVDKDGKCDIDADCCDPNECSNVSGERVCTAKCATETE
KCGSTTDPACCDGYSCVADACVDDSTEPTCASEFDKCDSDSDCCEDLECG
SDGTMSLCVFPVPDPTCETEGGPCSAADDCCTVGLQCISEKCAFDDSCAK
LDERCVNDADCCDDFSYSYVLCCYEGECEISA*
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mRNA from alignment at H-paniculata_contig2819:13668..17366+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2819.7693.1 ID=mRNA_H-paniculata_contig2819.7693.1|Name=mRNA_H-paniculata_contig2819.7693.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3699bp|location=Sequence derived from alignment at H-paniculata_contig2819:13668..17366+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CATCGCTACATGCGCACAGGAGCTCGAGGAGTGCGGCGTTGGCAAGGAGT
GCTGTGACAATTTGGAGTGCGGCAACGACGGCATCATGAACCGTGCGTGA
ACACTTGCGTCATTTAATATAATATTTTGACTCGATGTAGGTCAGCGAGC
CAGTGACTTAAACCCCCTGGCCGCCTGCAGGGAGGCAACTAACGCACTGA
GCTTAGACCCCCTCGTGGTAATCATCATCACCACGTTCGAGAGCTATTTA
AGTGATACTACCTTGTTTTTGGCCATTTTACTGTGCAAGTTTAGTATGTT
ACGGTTCGTTTCCTCGTCTCTGGCAAGATTGCGCCCCCCCCCCCGAGTGT
ATGTCAATGATGCGACGGGTGCCCTCGTGGCTCTCACCGATGTTTTTCTC
ACAATATCACACATTGCTCTCGCAGTTCCTGTTCTTGACGTTGATGTCGC
CTTGCTCGTGTCTTTCATCACCACCCGCGTGCAGTGTGCCTGGTACCCCC
GACTGAGCCTACCTGCGTGGACAAGGACGGCAAGTGTGATATCGATGCCG
ACTGTTGTGATCCAAACGAGTGCTCCAACGTCAGCGGCGAGAGAGGTGCG
CCTTCCTTTGCATCCACACTCGTGTTTTGTTTTCCCCCGTGTGTGGTGGA
CATGTCCCAATGCTTCGACGTGACCACTATTACTATCTGCATTGCAACTG
TATGGTTCATTCCATCACGGAGCTTAGACATGCTGTCAACATTAACTATA
CATGGGAACTTTCCACGGTTTCGCGCGCTTTTCCGTCGTAGCAGAGGTGT
GGTTTCTTGCCTTCATGTGTGCCTGATTTTCCGCGTTCCCTATCTAAAGT
AATTTTCGCCCGCCAGCTTACCCATCTGCCTGCCCCCCTGTCCGCCCGCG
CGCTGTTTCGATCGTTTGGTGGTGCAGTGTGCACCGCCAAATGCGCTACT
GAGACTGAGAAGTGCGGGTCGACCACTGACCCGGCGTGCTGTGACGGTTA
TAGCTGCGTAGCCGACGGTACGTGTCGATACATGCTTTCACGTGGTTTGT
AAATTTGGAATTATTTTCGTGCCCTCCAGGTTATTCTTTGTCTTGTGTAT
TCCCTCCCTACCGAGTCTGTATGCGACGCATGAGGAGACATCCTAATGTG
ACGACGGCCTCAATGTTGTTTAGCAATCAAGTACAATTTTGCTGTTTTAT
ACTTTCTACTGTTCTTGGGATTCGATGTCGACGTTGACGGTGTTGGTGCT
TCGTTTTTGGTTGAATACAACATTTTGGGTTTCAACTCTTAATGGTCTAC
AGCAGCGATCTGTAATATAATCGCGTCTCGCCTGTCTCCCGTTTTGGTAA
CATGTACGCGCGCGCGCGCGTGTGTGTGTGTGCGCGCGCACGTCAATTTC
GTGTCGTGCAGCGTGCGTTGACGATAGCACGGAGCCTACCTGCGCATCCG
AGTTCGACAAGTGCGACTCTGATTCGGACTGTTGCGAGGACCTGGAGTGT
GGTAGCGACGGGACGATGAGCTGTGAGTAATCTGGTCGGGCGCTCCATTC
CCATTTGACTGTCGGTGTAAATTGTTCGCGTACCGGATCGAAAAATGGGC
TCTGTAGTATTGCAGAGGAGCTTGGCATGGCTAATTACAGTTGACAACTT
TATAAGTTTTGGGCGGCCGCGCTATTTTTTTTTTCGAAAACAAATTAGGC
ACACGCGGGGGGTTTTCCACGTATGGGTCGGTCTCGGCTGTTGTCTGACC
TTCTTGGATCGAGTTGAGGATAAACTGCCGATTTCAGGTAAACATTCCTT
CTGACTCATCTCTCTTGACTGATATTCCGGGCGTTTGGGGTGTTTGCCTC
TATTTTCTTCTGTGTACCCTCCTGCGTGCAGTGTGCGTTTTCCCGGTCCC
CGACCCCACATGCGAGACGGAAGGTGGACCCTGCTCTGCTGCCGACGACT
GCTGTACTGTTGGCCTGCAATGCATCTCTGAGAGTGAGCTGATGAGATAT
TTCGTGCCCCCGATAATGATTCGGGATATGATTGAAAAAATATTTGTTCG
GGACTTGGCGGTGAACCAAGCGTGTCATCAAGCGTAGAGAGGAAGGAAGT
CTGATGACGTCAATTCTATGGGTATTAAGTCTCTCTGTCGGCAGGGATAG
GGATTGTTCCCTTTGTCCCCCATCACAGGTTCTAAAACGAAGGCAAACAG
ATGACAGACGGGTAGAACCCTGTCTATTTTGGTTTGAATGGATAATGTCG
CTTGTGTTTGTCTCGCTTTGCGGCTCCCTGACTGACACAAGGTTCTCGCG
GCGTGTTAATTTTATTTTTGGAGTAAAAAATAATCATGTAGGCTGCGCCC
CTGCATGCACGAATCATCATCTTAGCGCCTGCTTACTTGCAATCAGAACA
CCCTTAATCCACGTGTTGCTGACCGTTTTACTAGTTGTCGCCCCTTACAC
GTCGTTTTCGTGGGATTCTGCTCCGGTAATCCCAGAGTGTGCCTTCGACG
ACTCGTGCGCCAAGCTGGATGAACGCTGCGTCAACGACGCGGACTGCTGT
GATGACTTCAGCTACAGCTACGTCCTTTGCTGCTACGAAGGAGGTAAGCG
CGTTCTTTCATCATGGAGGTGTATATGGTCTGAACAATACCGCAGATCAC
AGCGAGAGTCACGTTTTGAACCATGGCACTCACCCTCCGGGTTTCCGATC
CTCCTTCCAACTTGATATTTCCACATCGTGTTTATTTTTACCGGTCTCGC
TATACGACACAACATCAGCGTGCACCTTGTTGATCACCCGGGTGCTTCCG
CCGGCCGCTGTGAACGTTGTTGCAGTATCCATCTTTTCGGCCATGCTTTC
ACTTGATGCCGTGCAGTGCTTGGGCAGTACGCTCTCGTGAAGTTTTTGGA
TATGGTGCGATACATGCGTACATTTCAACGACTACCACTCAGAGCCGTTG
AAGTCACTTTCATCGTGTAAACATTCGTCGCGTGAACATTAATCGCATTT
GGTCGACTAAGTTGACTATAATCGTTTCGATGTTTGGGAACTACTTACTT
ATTTGACACATTCGACTAAACTAGTCGTTTTCATGTTGAATAGCTAGTGA
GACCTGGTGGGCTCCGGCGACGGTTGGGAATTAATCATCATAATTCGACT
GTGACTAATGAGCGGTTGAATGTGTCATACTCCCCCCGTCACGCGACCAG
GTGCTAATGTATTCCCAGTCATTGTACGCTGACGAGTGTGTGATGACACC
GCTGGAACACTATATATTGACCGTGTTGTTTGCAAGATCTCAATAATTTT
CTGAAGCGTCGAAATTATCGACGCTGAGGGCGACGAAATCTTGTTTCACG
TGTCATCTCGACTCTGGACACTGGATCAACTTCAAGAGAGTGTTGTGAAT
ATTGTCAGTGAATCACTGAATCGCGGATATCATGGGTGCTCTGAGCGTCA
CATGTTTGGTTTAGGTTGTTTCTACACCGGAAGATTGCACCAGATACCCT
ACACTGAATTAATTGGTTTGTTCCTTCCATAGCAACAGTGTGGCTTGTTT
GACACAGTGATGTATCTATCGCATCGCCATCACTATTTTACCGTGTCCGA
CTTGAGTTTTCTTCTTTTTTTTTCGTCCGTCTGTTTGCTATTTGCAGAGT
GCGAAATCAGTGCCTAAATGCGGGGTCACGATGAGAAACGTACTTGGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig2819:13668..17366+

>mRNA_H-paniculata_contig2819.7693.1 ID=mRNA_H-paniculata_contig2819.7693.1|Name=mRNA_H-paniculata_contig2819.7693.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1098bp|location=Sequence derived from alignment at H-paniculata_contig2819:13668..17366+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACCATGAACCTGTGCCTGGTACCCCCGACTGAGCCTACCTGCGTGG
ACAAGGACGGCAAGTGTGATATCGATGCCGACTGTTGTGATCCAAACGAG
TGCTCCAACGTCAGCGGCGAGAGAGTGTGCCTGGTACCCCCGACTGAGCC
TACCTGCGTGGACAAGGACGGCAAGTGTGATATCGATGCCGACTGTTGTG
ATCCAAACGAGTGCTCCAACGTCAGCGGCGAGAGAGTGTGCACCGCCAAA
TGCGCTACTGAGACTGAGAAGTGCGGGTCGACCACTGACCCGGCGTGCTG
TGACGGTTATAGCTGCGTAGCCGACGTGTGCACCGCCAAATGCGCTACTG
AGACTGAGAAGTGCGGGTCGACCACTGACCCGGCGTGCTGTGACGGTTAT
AGCTGCGTAGCCGACGCGTGCGTTGACGATAGCACGGAGCCTACCTGCGC
ATCCGAGTTCGACAAGTGCGACTCTGATTCGGACTGTTGCGAGGACCTGG
AGTGTGGTAGCGACGGGACGATGAGCTCGTGCGTTGACGATAGCACGGAG
CCTACCTGCGCATCCGAGTTCGACAAGTGCGACTCTGATTCGGACTGTTG
CGAGGACCTGGAGTGTGGTAGCGACGGGACGATGAGCTTGTGCGTTTTCC
CGGTCCCCGACCCCACATGCGAGACGGAAGGTGGACCCTGCTCTGCTGCC
GACGACTGCTGTACTGTTGGCCTGCAATGCATCTCTGAGATGTGCGTTTT
CCCGGTCCCCGACCCCACATGCGAGACGGAAGGTGGACCCTGCTCTGCTG
CCGACGACTGCTGTACTGTTGGCCTGCAATGCATCTCTGAGAAGTGTGCC
TTCGACGACTCGTGCGCCAAGCTGGATGAACGCTGCGTCAACGACGCGGA
CTGCTGTGATGACTTCAGCTACAGCTACGTCCTTTGCTGCTACGAAGGAG
AGTGTGCCTTCGACGACTCGTGCGCCAAGCTGGATGAACGCTGCGTCAAC
GACGCGGACTGCTGTGATGACTTCAGCTACAGCTACGTCCTTTGCTGCTA
CGAAGGAGAGTGCGAAATCAGTGCCTAAAGTGCGAAATCAGTGCCTAA
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