mRNA_H-paniculata_contig1121.769.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1121.769.1
Unique NamemRNA_H-paniculata_contig1121.769.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1121.769.1 vs. uniprot
Match: A0A6H5K2S4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K2S4_9PHAE)

HSP 1 Score: 216 bits (551), Expect = 9.220e-62
Identity = 173/429 (40.33%), Postives = 228/429 (53.15%), Query Frame = 1 
Query:   67 NEKPFKDFSRKKRNIIARSLRASNAADCSRKTSAAL--------------------VPDCLTPRRRRRGQHEH-----ELDLDTMPNLEPYRREVVAQQSTTFGHRPRSASRMFNPSTMATSCGRPAENSESGAMRGGSVECFKGSRAGGKSKKQTASTLLPLGKGSRVHASM-LTAPMLKELLFRDASSVDELARDSSMLYQGRSTATAPASGSHGRSKRELFQLTIGN--ARDATTGITSSVAFANGNDVASATSSAK----KWRSDDPSARGDRGNIDTSWLSSSIQDMNMKNQGGVRNSMMKETTRRDILFPETTSWDGTPAPLPAPKDVRRAVSSLLEPDPDERLRDKLAKSRKLAAGVPVTASSMKHEKECTAMPV--ATAARWGPSPATPRTIIANEEVKRLVEARRERDQVMARRVRRAQF 1251
            N+KPF++FSRKKRN++A S+RA++A+D + +++A                      + +     R   G+  H     E+D+DT+P LEPYRREVVAQQ  TFGHRP SASRMFNP TMATSCG P++        GG     +G + GG             G+ S+   +  L+APMLK LL  D  +             G   A    +  H   ++ELF+   GN  +RD+       V     +   S+ +S K    KWRS D   RG+      SWL +S        +  + N+   +   R I   E   WDG PAPLPAP+  RRA+SSLL PDPDERLRDKL KSRK AAGVPVTASS K E+E    P       RW   PATPR +IA +E++RL E R ERD+ MA++VR+A+ 
Sbjct:   56 NKKPFREFSRKKRNLLAWSIRAASASDAAAQSTANKTHMPTRRLSTTVRSDLDGTDIGEFFNMERGMSGRVLHPTDRVEVDVDTLPTLEPYRREVVAQQPITFGHRPLSASRMFNPCTMATSCGIPSDGHH--PSTGG----IRGRKKGGGGHXXXX--XXXRGRNSKPRRTTGLSAPMLKALLRGDTPT-------------GEGGAALVTASQH---QQELFEPN-GNIVSRDSAPKPNYLVLDGQEDLTDSSVNSEKLDESKWRSVDDLGRGEALGELESWLQTSSHSGLGHGRRRLGNTKEGQELHR-IFSSERPPWDGAPAPLPAPQHTRRAISSLLMPDPDERLRDKLIKSRKAAAGVPVTASSTKDERERELRPFNPTPIGRWEVCPATPRAVIARQEIRRLSELREERDRAMAKKVRQAEL 458
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1121.769.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K2S4_9PHAE9.220e-6240.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1121contigH-paniculata_contig1121:4313..7245 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_000180.1
Exons4
Model size1260
Cds size1260
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1121.769.1prot_H-paniculata_contig1121.769.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1121 4313..7245 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928825.293163-CDS-H-paniculata_contig1121:4312..44801622928825.293163-CDS-H-paniculata_contig1121:4312..4480Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1121 4313..4480 -
1691480635.142072-CDS-H-paniculata_contig1121:4312..44801691480635.142072-CDS-H-paniculata_contig1121:4312..4480Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1121 4313..4480 -
1622928825.3100126-CDS-H-paniculata_contig1121:5451..56221622928825.3100126-CDS-H-paniculata_contig1121:5451..5622Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1121 5452..5622 -
1691480635.151058-CDS-H-paniculata_contig1121:5451..56221691480635.151058-CDS-H-paniculata_contig1121:5451..5622Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1121 5452..5622 -
1622928825.3282945-CDS-H-paniculata_contig1121:6052..69011622928825.3282945-CDS-H-paniculata_contig1121:6052..6901Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1121 6053..6901 -
1691480635.158846-CDS-H-paniculata_contig1121:6052..69011691480635.158846-CDS-H-paniculata_contig1121:6052..6901Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1121 6053..6901 -
1622928825.3400273-CDS-H-paniculata_contig1121:7173..72451622928825.3400273-CDS-H-paniculata_contig1121:7173..7245Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1121 7174..7245 -
1691480635.1717312-CDS-H-paniculata_contig1121:7173..72451691480635.1717312-CDS-H-paniculata_contig1121:7173..7245Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1121 7174..7245 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1121.769.1

>prot_H-paniculata_contig1121.769.1 ID=prot_H-paniculata_contig1121.769.1|Name=mRNA_H-paniculata_contig1121.769.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=420bp
QNPSFGQLTSADVPRTASFMIDNEKPFKDFSRKKRNIIARSLRASNAADC
SRKTSAALVPDCLTPRRRRRGQHEHELDLDTMPNLEPYRREVVAQQSTTF
GHRPRSASRMFNPSTMATSCGRPAENSESGAMRGGSVECFKGSRAGGKSK
KQTASTLLPLGKGSRVHASMLTAPMLKELLFRDASSVDELARDSSMLYQG
RSTATAPASGSHGRSKRELFQLTIGNARDATTGITSSVAFANGNDVASAT
SSAKKWRSDDPSARGDRGNIDTSWLSSSIQDMNMKNQGGVRNSMMKETTR
RDILFPETTSWDGTPAPLPAPKDVRRAVSSLLEPDPDERLRDKLAKSRKL
AAGVPVTASSMKHEKECTAMPVATAARWGPSPATPRTIIANEEVKRLVEA
RRERDQVMARRVRRAQFRYL
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mRNA from alignment at H-paniculata_contig1121:4313..7245-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1121.769.1 ID=mRNA_H-paniculata_contig1121.769.1|Name=mRNA_H-paniculata_contig1121.769.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2933bp|location=Sequence derived from alignment at H-paniculata_contig1121:4313..7245- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGAATCCGTCGTTCGGTCAGCTGACGTCAGCAGACGTGCCGCGGACAGC
TTCCTTCATGATAGATAACGAGGTGGGTGAAAAATATATTGTGGTTTGTA
CCCAAGCACAAAAAAATGCACCACCGTGCCTAAATACTTGGCATAAATAG
GCGAACGTCACAATTTTACTTCGTGCTTCCATTCTGAGCGGTCATGTTTA
GGGAATTTTTCTGGAAAGTATGATTACAAGGGGGGGGGGAGACATGAGCG
CTGTAGCAACTTGACCGCTTTTAATTGGTCACCGGGCGTGTGCCTGATCA
TTCCCTCTTCGCCCGACTATCTCCCTCCTGCCTTTATCCTGTAGAAACCC
TTTAAAGATTTTTCCCGGAAAAAGCGAAACATTATAGCCCGGTCACTTCG
TGCCAGCAACGCTGCAGATTGCTCTAGGAAAACGTCGGCAGCACTGGTGC
CGGACTGTCTTACCCCACGACGCAGACGACGTGGTCAACACGAACACGAG
CTTGATTTAGACACGATGCCAAATTTGGAGCCCTATCGAAGAGAGGTGGT
TGCTCAGCAGTCGACTACTTTCGGACACCGTCCGCGATCCGCCTCACGGA
TGTTCAACCCTTCAACGATGGCTACATCTTGCGGGAGGCCCGCGGAAAAT
TCTGAAAGCGGTGCAATGAGGGGGGGCAGTGTTGAATGTTTCAAGGGTTC
GAGAGCTGGTGGGAAGAGTAAAAAGCAAACCGCATCGACTCTACTACCGC
TAGGAAAAGGGAGCAGGGTGCATGCGTCTATGCTTACCGCCCCAATGCTG
AAGGAATTACTTTTCCGAGACGCGAGTAGCGTAGATGAATTAGCGAGGGA
CTCGTCGATGTTATACCAGGGACGGAGTACAGCTACGGCACCGGCCTCAG
GCTCGCATGGACGAAGCAAGCGTGAACTATTTCAGTTAACCATTGGAAAT
GCGCGTGATGCGACCACCGGTATTACAAGCTCCGTTGCTTTTGCAAATGG
TAACGATGTTGCAAGTGCAACTTCTAGTGCCAAAAAATGGCGATCGGACG
ATCCCAGCGCCAGAGGAGACCGAGGAAATATTGACACAAGTTGGCTATCA
AGTTCAATTCAAGACATGAACATGAAGAACCAGGGCGGGGTTCGAAATTC
CATGATGAAGGAAACAACTAGACGAGACATTTTGTTCCCTGAGGTGAGGA
CAATTGAGTCTTTCGCTCTAGGGCAAAAAGCGACCAACAGAGTTAGATTC
GATTTCCTCAACGCTGGGTGAATAAGTCAAGGCTGCCGGTTCAATTCGAG
AACGACACCGAATCTAGGAAGGCAATCGTTGCTAGGACCGCATTACCGTA
TGTGCCTTTGTTGCGGGTTTTGTAAATACTACAAAATATATCGCCATCCG
CCATGGGCCACCCCGCACGATATGCGGAGAATATATTGAGTCAACACAAG
CTCGCATATACGCACAATCTTCGTGAGTACTGCCTGGCGCTATTTCAATC
TACCAACATATTCGCCCTAAATCGAATTAAATCAGACAAGGCAGCTACTC
CCTGCGCACCCTCTACTGTTGTCTTTCAATCGCTACTGTTTGTCCTGGGG
AATATCGGTTTGGGCCGCCGTAGACAACATCATGGGACGGGACACCCGCG
CCTCTACCCGCTCCAAAAGATGTACGACGAGCTGTGAGCTCGTTGCTGGA
GCCAGACCCGGACGAGAGGTTGAGGGACAAGCTTGCCAAGTCCAGAAAAC
TCGCGGCAGGGGTTCCAGTCACGGCATCAAGCATGAAGCACGAGGTGAAG
ACACTGTACAGACCCCCAATGCGTTAAAGCTAGGGAGGCAACATTCTATG
AACTGCACCCGGGGCTAAGGTGGGCGCGGAAGACTCAGCCGTTGGTTGTG
AATGTGGGGATCAGTTTGCAGGAAATACTGTGGGTTGTTTGAAACCGTCT
CGGGGTTTTGTCAGCGAGTAGGTAAGGTCCGCTCCATACGAGGCCGCTTT
TTGTCCGATGTTTTTCCGTCCTTCATTTTCCGAAAAGTATAAATCACGAT
AGAGAGCTCCATATTGAGAGAAATGTGCGGAAACGCTGTACATCATTCCC
CCCCACACACGTCTGATTATCTTTGGTTACAGACGTCAACTTTTTCGGAA
AACGGAACAACATCAGAAATTCGGACAAAATAGTTACTTCGTTGAGAACA
TGCATACTAAGACTGCAGAGTATACATGTTTTCTTCATGGAAGGATAACC
GAGTCTCAGTGGTAATAGCAAATGTAGCGTAATTCCTATCGACGCCTTGT
AACTCTCGAGAACCGAGAAGAATCCATGGTGTCACTTACGGTAGAGGTGT
TCAGCATTAGGGGATCAATCGCGTGCCTTCAGGCGATGCTATTCTGTTTC
CGTTCATCCAAGCGTCCACCGCTACCTTTCCCTACCTTTCCACACGTTCT
TTATGCGCTATCGAGGGCCTAAACAATACGTAATCGGTAAAAAAAGCTCA
TGTCGCATCATCTCCTGTAACTCATGGCCGTCGTCTATTAACCCTCAAGC
GGCTAAGGCAATCGACCCTTCAGTAAAGTCGAAATATTTCTTGTGCCTCC
TCTGCGCACCGGCAGCACATAGTCAGCTTTTGTTGCTAATCTTGGGCTGA
TGACTGTTGGATATTTTTGTTCGGGGAGTGAAGCAACGCACCGAATCTTC
TCTCGTCACTCATCACTCGTCACCACGTGAAGTATAAACATCTACAACTT
GACACGTCCACGCAGAAGGAGTGCACGGCGATGCCTGTGGCCACAGCTGC
GCGGTGGGGACCGTCTCCCGCAACTCCCCGCACTATCATTGCCAACGAGG
AAGTAAAACGGTTAGTGGAAGCGCGACGAGAGAGAGACCAAGTCATGGCA
CGCCGCGTTCGGCGGGCACAATTTAGGTACTTG
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Coding sequence (CDS) from alignment at H-paniculata_contig1121:4313..7245-

>mRNA_H-paniculata_contig1121.769.1 ID=mRNA_H-paniculata_contig1121.769.1|Name=mRNA_H-paniculata_contig1121.769.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2520bp|location=Sequence derived from alignment at H-paniculata_contig1121:4313..7245- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGAATCCGTCGTTCGGTCAGCTGACGTCAGCAGACGTGCCGCGGACAGC
TTCCTTCATGATAGATAACGAGCAGAATCCGTCGTTCGGTCAGCTGACGT
CAGCAGACGTGCCGCGGACAGCTTCCTTCATGATAGATAACGAGAAACCC
TTTAAAGATTTTTCCCGGAAAAAGCGAAACATTATAGCCCGGTCACTTCG
TGCCAGCAACGCTGCAGATTGCTCTAGGAAAACGTCGGCAGCACTGGTGC
CGGACTGTCTTACCCCACGACGCAGACGACGTGGTCAACACGAACACGAG
CTTGATTTAGACACGATGCCAAATTTGGAGCCCTATCGAAGAGAGGTGGT
TGCTCAGCAGTCGACTACTTTCGGACACCGTCCGCGATCCGCCTCACGGA
TGTTCAACCCTTCAACGATGGCTACATCTTGCGGGAGGCCCGCGGAAAAT
TCTGAAAGCGGTGCAATGAGGGGGGGCAGTGTTGAATGTTTCAAGGGTTC
GAGAGCTGGTGGGAAGAGTAAAAAGCAAACCGCATCGACTCTACTACCGC
TAGGAAAAGGGAGCAGGGTGCATGCGTCTATGCTTACCGCCCCAATGCTG
AAGGAATTACTTTTCCGAGACGCGAGTAGCGTAGATGAATTAGCGAGGGA
CTCGTCGATGTTATACCAGGGACGGAGTACAGCTACGGCACCGGCCTCAG
GCTCGCATGGACGAAGCAAGCGTGAACTATTTCAGTTAACCATTGGAAAT
GCGCGTGATGCGACCACCGGTATTACAAGCTCCGTTGCTTTTGCAAATGG
TAACGATGTTGCAAGTGCAACTTCTAGTGCCAAAAAATGGCGATCGGACG
ATCCCAGCGCCAGAGGAGACCGAGGAAATATTGACACAAGTTGGCTATCA
AGTTCAATTCAAGACATGAACATGAAGAACCAGGGCGGGGTTCGAAATTC
CATGATGAAGGAAACAACTAGACGAGACATTTTGTTCCCTGAGAAACCCT
TTAAAGATTTTTCCCGGAAAAAGCGAAACATTATAGCCCGGTCACTTCGT
GCCAGCAACGCTGCAGATTGCTCTAGGAAAACGTCGGCAGCACTGGTGCC
GGACTGTCTTACCCCACGACGCAGACGACGTGGTCAACACGAACACGAGC
TTGATTTAGACACGATGCCAAATTTGGAGCCCTATCGAAGAGAGGTGGTT
GCTCAGCAGTCGACTACTTTCGGACACCGTCCGCGATCCGCCTCACGGAT
GTTCAACCCTTCAACGATGGCTACATCTTGCGGGAGGCCCGCGGAAAATT
CTGAAAGCGGTGCAATGAGGGGGGGCAGTGTTGAATGTTTCAAGGGTTCG
AGAGCTGGTGGGAAGAGTAAAAAGCAAACCGCATCGACTCTACTACCGCT
AGGAAAAGGGAGCAGGGTGCATGCGTCTATGCTTACCGCCCCAATGCTGA
AGGAATTACTTTTCCGAGACGCGAGTAGCGTAGATGAATTAGCGAGGGAC
TCGTCGATGTTATACCAGGGACGGAGTACAGCTACGGCACCGGCCTCAGG
CTCGCATGGACGAAGCAAGCGTGAACTATTTCAGTTAACCATTGGAAATG
CGCGTGATGCGACCACCGGTATTACAAGCTCCGTTGCTTTTGCAAATGGT
AACGATGTTGCAAGTGCAACTTCTAGTGCCAAAAAATGGCGATCGGACGA
TCCCAGCGCCAGAGGAGACCGAGGAAATATTGACACAAGTTGGCTATCAA
GTTCAATTCAAGACATGAACATGAAGAACCAGGGCGGGGTTCGAAATTCC
ATGATGAAGGAAACAACTAGACGAGACATTTTGTTCCCTGAGACAACATC
ATGGGACGGGACACCCGCGCCTCTACCCGCTCCAAAAGATGTACGACGAG
CTGTGAGCTCGTTGCTGGAGCCAGACCCGGACGAGAGGTTGAGGGACAAG
CTTGCCAAGTCCAGAAAACTCGCGGCAGGGGTTCCAGTCACGGCATCAAG
CATGAAGCACGAGACAACATCATGGGACGGGACACCCGCGCCTCTACCCG
CTCCAAAAGATGTACGACGAGCTGTGAGCTCGTTGCTGGAGCCAGACCCG
GACGAGAGGTTGAGGGACAAGCTTGCCAAGTCCAGAAAACTCGCGGCAGG
GGTTCCAGTCACGGCATCAAGCATGAAGCACGAGAAGGAGTGCACGGCGA
TGCCTGTGGCCACAGCTGCGCGGTGGGGACCGTCTCCCGCAACTCCCCGC
ACTATCATTGCCAACGAGGAAGTAAAACGGTTAGTGGAAGCGCGACGAGA
GAGAGACCAAGTCATGGCACGCCGCGTTCGGCGGGCACAATTTAGGTACT
TGAAGGAGTGCACGGCGATGCCTGTGGCCACAGCTGCGCGGTGGGGACCG
TCTCCCGCAACTCCCCGCACTATCATTGCCAACGAGGAAGTAAAACGGTT
AGTGGAAGCGCGACGAGAGAGAGACCAAGTCATGGCACGCCGCGTTCGGC
GGGCACAATTTAGGTACTTG
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