prot_H-paniculata_contig28170.7689.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig28170.7689.1
Unique Nameprot_H-paniculata_contig28170.7689.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length222
Homology
BLAST of mRNA_H-paniculata_contig28170.7689.1 vs. uniprot
Match: A0A6G0WHK2_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WHK2_9STRA)

HSP 1 Score: 154 bits (390), Expect = 2.490e-42
Identity = 86/222 (38.74%), Postives = 136/222 (61.26%), Query Frame = 0
Query:    2 EEEWGALVKKGRWESEDPGRLMAGQKAIRTKWIFKGKPKEDGSVARYKAQLVAQGFSQVKGEDSFETSAPVARMSTLRTVFSLATEHDFELEGMDLDAAYLNAPVEEELFVKLPPSFS--LSPETYRLSAACVKSLYALEQGDRNWNNTLDDFLVGMGLDRSTTDSCLYFSSDEGGETNLLVAVYGDDLLIAGRR-EKVDEFKHNISQRFRVKDLGSLSRVL 220
            E E  +L+    W   D   L  G+KAI  KW+FK K K DGS+ +YKA+LVA+G+SQ  G D  ET  PVA+ +++R + SLA +H+ EL+ MD++ A+LN+ ++E++++++P   +   +P   +      KSLY L+Q  R WN T+D F++ +G  +S  D C+Y    +  E  +LV++Y DDL++A    E +   K  +S+RF++ DLG LS  L
Sbjct:   65 ESEIKSLLDNKTW---DVVELPQGRKAIGCKWVFKVKEKADGSIDKYKARLVAKGYSQTFGIDYEETFTPVAKFTSIRVLLSLAAKHNLELQQMDVNTAFLNSDLDEDIYMEIPMGLNDHKNPGLSKPVLKLKKSLYGLKQAPRLWNQTIDGFMLSIGFVKSKADHCIYIKRQD--EDIILVSLYVDDLILASNSDEMMQTTKIALSKRFKMTDLGPLSYCL 281          
BLAST of mRNA_H-paniculata_contig28170.7689.1 vs. uniprot
Match: A0A151S5M8_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151S5M8_CAJCA)

HSP 1 Score: 154 bits (388), Expect = 1.650e-40
Identity = 91/218 (41.74%), Postives = 130/218 (59.63%), Query Frame = 0
Query:    1 MEEEWGALVKKGRWESEDPGRLMAGQKAIRTKWIFKGKPKEDGSVARYKAQLVAQGFSQVKGEDSFETSAPVARMSTLRTVFSLATEHDFELEGMDLDAAYLNAPVEEELFVKLPPSFSLSPETYRLSAACVKSLYALEQGDRNWNNTLDDFLVGMGLDRSTTDSCLYFSSDEGGETNLLVAVYGDDLLIAGRREK-VDEFKHNISQRFRVKDLGSLS 217
            M+EE  A+ +   W   D   L      I  KW++K K   DGSVARYKA+LVA+GF Q +G +  E  APVARM T+RTV +LA+   +++  MD+ +A+LN  +EEE++V  PP F +  E +++     K+LY L+Q  R WNN +D FLV  G  +   +  +Y S  E GE  L++ +Y DDLLI G   K ++EFK  +  +F + DLG LS
Sbjct:    1 MQEELDAIQRNQTWALTD---LPKNHMPITVKWVYKTKLNPDGSVARYKARLVAKGFLQREGLNYKEIYAPVARMETIRTVVALASYKGWQMHQMDVKSAFLNGELEEEVYVTQPPGFKVVGEEHKV-LKLKKALYGLKQAPRAWNNKIDGFLVQQGFVKCAVEYGIY-SRIENGEV-LIICLYVDDLLITGSNIKMIEEFKRRMKVQFEMTDLGRLS 212          
BLAST of mRNA_H-paniculata_contig28170.7689.1 vs. uniprot
Match: A0A4Y1R7U6_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1R7U6_PRUDU)

HSP 1 Score: 147 bits (370), Expect = 1.820e-40
Identity = 75/215 (34.88%), Postives = 134/215 (62.33%), Query Frame = 0
Query:    1 MEEEWGALVKKGRWESEDPGRLMAGQKAIRTKWIFKGKPKEDGSVARYKAQLVAQGFSQVKGEDSFETSAPVARMSTLRTVFSLATEHDFELEGMDLDAAYLNAPVEEELFVKLPPSFSLSPETYRLSAACVKSLYALEQGDRNWNNTLDDFLVGMGLDRSTTDSCLYFSSDEGGETNLLVAVYGDDLLIAGRR-EKVDEFKHNISQRFRVKDLG 214
            + +E+ ++++   W   +   L AG KAI  KW+F+ K K DGS+ +YKA+LVA+GF+Q KG D F+T +PV+R++T+RT+ +LA+ H+  +  MD+  A+LN  ++EE++++ P  F +  + +++    VKSLY L+Q  + W+   D  ++      +  D C+Y+  + G   ++++ +Y DD+LI G   E V+  K  +S+ F +KD+G
Sbjct:   12 INDEFQSIIQNNTWMLTN---LPAGNKAIGCKWVFRKKLKPDGSIDKYKARLVAKGFTQKKGIDYFDTYSPVSRITTIRTLIALASVHNLVIHQMDVKTAFLNGDLDEEIYMEQPEGFIVKGQEHKV-CKLVKSLYGLKQAPKQWHEKFDKVILDYDFKFNGHDKCVYYKENNG--EHVILCLYVDDILIFGTNLEIVNNVKSYLSRNFDMKDMG 220          
BLAST of mRNA_H-paniculata_contig28170.7689.1 vs. uniprot
Match: A0A151S930_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151S930_CAJCA)

HSP 1 Score: 150 bits (380), Expect = 2.200e-40
Identity = 88/221 (39.82%), Postives = 128/221 (57.92%), Query Frame = 0
Query:    1 MEEEWGALVKKGRWESEDPGRLMAGQKAIRTKWIFKGKPKEDGSVARYKAQLVAQGFSQVKGEDSFETSAPVARMSTLRTVFSLATEHDFELEGMDLDAAYLNAPVEEELFVKLPPSFSLSPETYRLSAACVKSLYALEQGDRNWNNTLDDFLVGMGLDRSTTDSCLYFSSDEGGETNLLVAVYGDDLLIAGR-REKVDEFKHNISQRFRVKDLGSLSRVL 220
            ME E  AL K   W      RL  G++ +  KW+++ K K DGSV RYKA+LVA+GF+Q +G D FET +PV ++ST+R + SLA  H++ L  +D+D A+L+  + EE+++K PP F LS    RL     KSLY L+Q  R WN  L + L+ +   +S+TD  L+        T LLV  Y DD+++ G    ++   K  +  +F +KDLG L   L
Sbjct:   61 MEAELQALEKNQTWSLV---RLPEGKRPVGCKWVYRVKYKVDGSVERYKARLVAKGFTQTEGVDYFETFSPVVKLSTVRFLLSLAAAHNWFLHQLDVDNAFLHGDLFEEVYMKPPPGFKLSHP--RLVCKLHKSLYGLKQASRQWNQKLTEALISLNFIQSSTDHSLFIKKSHSSITALLV--YVDDVVLTGNDMAEISAVKAYLHAQFHIKDLGPLKFFL 274          
BLAST of mRNA_H-paniculata_contig28170.7689.1 vs. uniprot
Match: A0A151RBY1_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RBY1_CAJCA)

HSP 1 Score: 155 bits (392), Expect = 7.340e-40
Identity = 91/218 (41.74%), Postives = 131/218 (60.09%), Query Frame = 0
Query:    1 MEEEWGALVKKGRWESEDPGRLMAGQKAIRTKWIFKGKPKEDGSVARYKAQLVAQGFSQVKGEDSFETSAPVARMSTLRTVFSLATEHDFELEGMDLDAAYLNAPVEEELFVKLPPSFSLSPETYRLSAACVKSLYALEQGDRNWNNTLDDFLVGMGLDRSTTDSCLYFSSDEGGETNLLVAVYGDDLLIAGRREK-VDEFKHNISQRFRVKDLGSLS 217
            M+EE  A+ +   W   +   L    + I  KW++K K   DGSVARYKA+LVA+GF Q +G D  E  APVARM T+RTV +LA+   +++  MD+ +A+LN  +EEE++V  PP F +  E +++     K+LY L+Q  R WNN +D FLV  G  +   +  +Y S  E GE  L++ +Y DDLLI G   K ++EFK  +  +F + DLG LS
Sbjct:  841 MQEELDAIQRNQTWALTE---LPKNHRPITVKWVYKTKLNPDGSVARYKARLVAKGFLQREGLDYKEIYAPVARMETIRTVVALASYKGWQMHQMDVKSAFLNGELEEEVYVTQPPGFKVVGEEHKV-LKLKKALYGLKQAPRAWNNKIDGFLVQQGFVKCAVEYGIY-SRIENGEV-LIICLYVDDLLITGSNIKMIEEFKRRMKVQFEMTDLGRLS 1052          
BLAST of mRNA_H-paniculata_contig28170.7689.1 vs. uniprot
Match: A0A5E4GKT5_PRUDU (PREDICTED: Retrovirus-related Pol poly from transposon (Fragment) n=2 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4GKT5_PRUDU)

HSP 1 Score: 145 bits (366), Expect = 9.590e-40
Identity = 80/199 (40.20%), Postives = 122/199 (61.31%), Query Frame = 0
Query:   25 GQKAIRTKWIFKGKPKEDGSVARYKAQLVAQGFSQVKGEDSFETSAPVARMSTLRTVFSLATEHDFELEGMDLDAAYLNAPVEEELFVKLPPSFSLSPETYRLSAACV--KSLYALEQGDRNWNNTLDDFLVGMGLDRSTTDSCLYFSSDEGGETNLLVAVYGDDLLIAGRR-EKVDEFKHNISQRFRVKDLGSLSRVL 220
            G+K + ++WI+K K   DGS+ R+KA+LVA+GF+Q  G D  ET APVA+MST+R + S+A  H++ L  MD+  A+L+  +EEE++++LPP     P+    S  C   KS+Y L+Q  R W   L   L   G  RS  DS L+  +   G+  L+V +Y DD++I G   ++++  KH++ Q+F +KDLG L   L
Sbjct:    1 GKKVVGSRWIYKTKFNSDGSIERHKARLVARGFTQTFGVDYKETFAPVAKMSTVRVLLSVAINHEWPLYQMDVKNAFLHGDLEEEVYMQLPPGH---PQAQNSSMVCKLHKSIYGLKQSPRAWYAKLSSVLEKFGFKRSHADSSLFVRTGSVGK--LVVLIYVDDIIITGDNIDEINTLKHSLHQKFAIKDLGVLKYFL 194          
BLAST of mRNA_H-paniculata_contig28170.7689.1 vs. uniprot
Match: A0A151TIQ1_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151TIQ1_CAJCA)

HSP 1 Score: 154 bits (390), Expect = 1.160e-39
Identity = 90/224 (40.18%), Postives = 131/224 (58.48%), Query Frame = 0
Query:    1 MEEEWGALVKKGRWESEDPGRLMAGQKAIRTKWIFKGKPKEDGSVARYKAQLVAQGFSQVKGEDSFETSAPVARMSTLRTVFSLATEHDFELEGMDLDAAYLNAPVEEELFVKLPPSFSLS---PETYRLSAACVKSLYALEQGDRNWNNTLDDFLVGMGLDRSTTDSCLYFSSDEGGETNLLVAVYGDDLLIAGRREK-VDEFKHNISQRFRVKDLGSLSRVL 220
            M EE  ++ K   W+      L  G+KAI  +W++K K    G VA+YKA+LVA+GF Q +G D  E  APVAR+ T+R V S+A+ H + +  MD+ +A+LN P+EEE+FV  PP F +     + YRL     K+LY L+Q  R WN  +D FL+ +G  + TT+  +Y       +  L+V +Y DDLL+ G + K +D FK ++   F + DLG LS  L
Sbjct:  363 MREELRSIEKNQTWKLTP---LPMGKKAITVRWVYKVKLNSKGEVAKYKARLVAKGFLQRQGLDYDEVFAPVARLETIRLVVSMASYHCWPIHQMDVKSAFLNGPLEEEVFVSQPPGFEIKGKKKQVYRLH----KALYGLKQAPRAWNKRIDSFLLQLGFVKCTTEYGVYTKGLNMTDL-LIVCLYVDDLLVTGSKAKEIDAFKQDMKAEFEMNDLGKLSYFL 578          
BLAST of mRNA_H-paniculata_contig28170.7689.1 vs. uniprot
Match: H3H934_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H934_PHYRM)

HSP 1 Score: 147 bits (370), Expect = 1.320e-39
Identity = 80/218 (36.70%), Postives = 129/218 (59.17%), Query Frame = 0
Query:    4 EWGALVKKGRWESEDPGRLMAGQKAIRTKWIFKGKPKEDGSVARYKAQLVAQGFSQVKGEDSFETSAPVARMSTLRTVFSLATEHDFELEGMDLDAAYLNAPVEEELFVKLPPSFSLSPETYRLSAACVKSLYALEQGDRNWNNTLDDFLVGMGLDRSTTDSCLYFSSDEGGETNLLVAVYGDDLLIAGRREKV-DEFKHNISQRFRVKDLGSLSRVL 220
            E  +L+K   W   D   L  G+KAI  +W+F+ K  + G + R+KA+LVA+GFSQ  G D  ET APVA+ +++R V SLA ++  +L  MD+  A+LN  ++E++++  P  +        +     +SLY L+Q  R WN T+DDF++ +G  +  +D C+Y   D  G+  + VA+Y DDL++A   +++ +  KH +S+RF + DLG L   L
Sbjct:    7 ECDSLLKNDTW---DVVPLPKGRKAIGCRWVFRVKDNQAGEIERFKARLVAKGFSQKYGIDYDETFAPVAKFTSIRIVLSLAAKYGLKLHQMDVKTAFLNGVLDEDIYMAQPDGYVDEDHPDHV-CKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD--GQDMIFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGELEYFL 218          
BLAST of mRNA_H-paniculata_contig28170.7689.1 vs. uniprot
Match: A0A6A4ZM73_9STRA (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZM73_9STRA)

HSP 1 Score: 153 bits (386), Expect = 2.450e-39
Identity = 81/210 (38.57%), Postives = 132/210 (62.86%), Query Frame = 0
Query:   15 ESEDPGRLMAGQKAIRTKWIFKGKPKEDGSVARYKAQLVAQGFSQVKGEDSFETSAPVARMSTLRTVFSLATEHDFELEGMDLDAAYLNAPVEEELFVKLPPSFSLS---PETYRLSAACVKSLYALEQGDRNWNNTLDDFLVGMGLDRSTTDSCLYFSSDEGGETNLLVAVYGDDLLIAGRREKVDEFKHN-ISQRFRVKDLGSLSRVL 220
            E+ D  +L+ G+KAI +KW+FK K K DGS+ ++KA+LVA+GFSQ  G D  ET APVA+ +++R + SLA ++  +L+ MD+  A+LN  ++EE+++K+P    ++    ++  L     KSLY L+Q  R WN T DDF++  G ++S  D C+Y  S    +  + +++Y DDL++A    ++ +   N +  RF++ DLGSL   L
Sbjct:  332 ETWDVVKLLEGRKAIGSKWVFKVKEKADGSIDKFKARLVAKGFSQQYGVDYEETFAPVAKFASIRILLSLAAQYSLDLQQMDVKTAFLNGTLDEEIYMKIPEGLDVNNGDSKSGPLVLRLKKSLYGLKQAPRLWNKTFDDFMLSNGFNKSEADHCIY--SKRTDDDLMFISLYVDDLIMASNCPRLMKATKNALHGRFKMSDLGSLQYCL 539          
BLAST of mRNA_H-paniculata_contig28170.7689.1 vs. uniprot
Match: A0A5S6Q3I8_TRIMR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6Q3I8_TRIMR)

HSP 1 Score: 151 bits (381), Expect = 3.350e-39
Identity = 82/208 (39.42%), Postives = 119/208 (57.21%), Query Frame = 0
Query:   14 WESEDPGRLMAGQKAIRTKWIFKGKPKEDGSVARYKAQLVAQGFSQVKGEDSFETSAPVARMSTLRTVFSLATEHDFELEGMDLDAAYLNAPVEEELFVKLPPSFSLSPETYRLSAACVKSLYALEQGDRNWNNTLDDFLVGMGLDRSTTDSCLYFSSDEGGETNLLVAVYGDDLLIAGRREKVD-EFKHNISQRFRVKDLGSLSRVL 220
            W+  D   L  G+K I  KW+FK KP  +G    YKA+LVA+GFSQ  GED  ET APV +  T+R + SLA      +  +D+ AAYLN+P+EEEL+VK PP F +  + +++     KSLY L+Q  R WN    D L  +G +++  D CL+   ++ G    ++ +Y DDLL+ G   K+  E    + + F+ KDLG +   L
Sbjct:   60 WDLVD---LPPGKKPISLKWVFKVKPNSEGQADTYKARLVARGFSQRYGEDYDETFAPVVKHDTVRVLLSLAAAQKLHVRHLDVKAAYLNSPLEEELYVKQPPGFEVQGQEHKV-LLLRKSLYGLKQSARAWNKMATDTLTSLGFEQAMADHCLFSKKEKNGSRTYIL-IYVDDLLVVGATPKITKEVGIQMDKFFQTKDLGEVKNYL 262          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28170.7689.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6G0WHK2_9STRA2.490e-4238.74Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A151S5M8_CAJCA1.650e-4041.74Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y1R7U6_PRUDU1.820e-4034.88Transposable element protein n=1 Tax=Prunus dulcis... [more]
A0A151S930_CAJCA2.200e-4039.82Retrovirus-related Pol polyprotein from transposon... [more]
A0A151RBY1_CAJCA7.340e-4041.74Retrovirus-related Pol polyprotein from transposon... [more]
A0A5E4GKT5_PRUDU9.590e-4040.20PREDICTED: Retrovirus-related Pol poly from transp... [more]
A0A151TIQ1_CAJCA1.160e-3940.18Retrovirus-related Pol polyprotein from transposon... [more]
H3H934_PHYRM1.320e-3936.70Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A4ZM73_9STRA2.450e-3938.57Integrase catalytic domain-containing protein (Fra... [more]
A0A5S6Q3I8_TRIMR3.350e-3939.42Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 25..220
e-value: 1.1E-46
score: 159.5
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 1..181
NoneNo IPR availablePANTHERPTHR11439:SF273coord: 1..181

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig28170contigH-paniculata_contig28170:2072..2737 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig28170.7689.1mRNA_H-paniculata_contig28170.7689.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig28170 2015..3054 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig28170.7689.1 ID=prot_H-paniculata_contig28170.7689.1|Name=mRNA_H-paniculata_contig28170.7689.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=222bp
MEEEWGALVKKGRWESEDPGRLMAGQKAIRTKWIFKGKPKEDGSVARYKA
QLVAQGFSQVKGEDSFETSAPVARMSTLRTVFSLATEHDFELEGMDLDAA
YLNAPVEEELFVKLPPSFSLSPETYRLSAACVKSLYALEQGDRNWNNTLD
DFLVGMGLDRSTTDSCLYFSSDEGGETNLLVAVYGDDLLIAGRREKVDEF
KHNISQRFRVKDLGSLSRVLK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like