prot_H-paniculata_contig2817.7687.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2817.7687.1
Unique Nameprot_H-paniculata_contig2817.7687.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length202
Homology
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BLAST of mRNA_H-paniculata_contig2817.7687.1 vs. uniprot
Match: D7G4T6_ECTSI (Plastid protein-export protein secB, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4T6_ECTSI)

HSP 1 Score: 152 bits (383), Expect = 5.180e-43
Identity = 74/110 (67.27%), Postives = 89/110 (80.91%), Query Frame = 0 
Query:   94 AATEAAARSKQLNIACNDVVRTILKQNPGDSD--AKALRARLEEQRHLLVSSGDEMSSLFFENLLLVCDHELHPDVSQLQGEYGRAWKNILHYIEDAGWQLTDPPFTVMG 201
            AA + AARSKQLNIACNDVVRTIL  NP +    A+ALR RL  Q+  LVS  D+MS+LFF+NLLLVC+HELHPD+  L+G+YG+AW  ILHY+EDAGWQLTDPPF++ G
Sbjct:   90 AARQEAARSKQLNIACNDVVRTILDGNPTNEKERAEALRQRLISQKDDLVSPEDDMSALFFDNLLLVCEHELHPDIGILRGQYGKAWNTILHYVEDAGWQLTDPPFSISG 199
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BLAST of mRNA_H-paniculata_contig2817.7687.1 vs. uniprot
Match: A0A836CL25_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL25_9STRA)

HSP 1 Score: 120 bits (302), Expect = 2.340e-31
Identity = 55/101 (54.46%), Postives = 73/101 (72.28%), Query Frame = 0 
Query:  103 KQLNIACNDVVRTILKQNPG--DSDAKALRARLEEQRHLLVSSGDEMSSLFFENLLLVCDHELHPDVSQLQGEYGRAWKNILHYIEDAGWQLTDPPFTVMG 201
            K LNIACNDV++TILK +    DSD + ++ RL   + LLV + D  S LF+ NL+ VC+H LHP + +L+G Y  AWK++LH+IEDAGWQLT+PPF V G
Sbjct:   56 KHLNIACNDVIKTILKADAEKLDSDMQGIKERLIRDKELLVVTDDPQSELFYNNLVCVCEHSLHPRLHELKGRYASAWKSMLHWIEDAGWQLTEPPFRVNG 156
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2817.7687.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4T6_ECTSI5.180e-4367.27Plastid protein-export protein secB, putative n=2 ... [more]
A0A836CL25_9STRA2.340e-3154.46Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..19
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..201
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..21
score: 0.694

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2817contigH-paniculata_contig2817:7679..9087 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2817.7687.1mRNA_H-paniculata_contig2817.7687.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2817 6983..9163 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2817.7687.1 ID=prot_H-paniculata_contig2817.7687.1|Name=mRNA_H-paniculata_contig2817.7687.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=202bp
MSSFIGILASLLSVLPAFTDGFLVPIKLASLDFSAVARFDPSPTTSASHP
SSVNVNWRRRSCESSSPSRSRVAQLTMVSSEGDNAGAFASAGTAATEAAA
RSKQLNIACNDVVRTILKQNPGDSDAKALRARLEEQRHLLVSSGDEMSSL
FFENLLLVCDHELHPDVSQLQGEYGRAWKNILHYIEDAGWQLTDPPFTVM
G*
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