mRNA_H-paniculata_contig2817.7687.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2817.7687.1
Unique NamemRNA_H-paniculata_contig2817.7687.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2817.7687.1 vs. uniprot
Match: D7G4T6_ECTSI (Plastid protein-export protein secB, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4T6_ECTSI)

HSP 1 Score: 153 bits (386), Expect = 1.720e-40
Identity = 74/110 (67.27%), Postives = 89/110 (80.91%), Query Frame = 2 
Query:  356 AATEAAARSKQLNIACNDVVRTILKQNPGDSD--AKALRARLEEQRHLLVSSGDEMSSLFFENLLLVCDHELHPDVSQLQGEYGRAWKNILHYIEDAGWQLTDPPFTVMG 679
            AA + AARSKQLNIACNDVVRTIL  NP +    A+ALR RL  Q+  LVS  D+MS+LFF+NLLLVC+HELHPD+  L+G+YG+AW  ILHY+EDAGWQLTDPPF++ G
Sbjct:   90 AARQEAARSKQLNIACNDVVRTILDGNPTNEKERAEALRQRLISQKDDLVSPEDDMSALFFDNLLLVCEHELHPDIGILRGQYGKAWNTILHYVEDAGWQLTDPPFSISG 199
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BLAST of mRNA_H-paniculata_contig2817.7687.1 vs. uniprot
Match: A0A836CL25_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL25_9STRA)

HSP 1 Score: 122 bits (305), Expect = 2.450e-29
Identity = 55/101 (54.46%), Postives = 73/101 (72.28%), Query Frame = 2 
Query:  383 KQLNIACNDVVRTILKQNPG--DSDAKALRARLEEQRHLLVSSGDEMSSLFFENLLLVCDHELHPDVSQLQGEYGRAWKNILHYIEDAGWQLTDPPFTVMG 679
            K LNIACNDV++TILK +    DSD + ++ RL   + LLV + D  S LF+ NL+ VC+H LHP + +L+G Y  AWK++LH+IEDAGWQLT+PPF V G
Sbjct:   56 KHLNIACNDVIKTILKADAEKLDSDMQGIKERLIRDKELLVVTDDPQSELFYNNLVCVCEHSLHPRLHELKGRYASAWKSMLHWIEDAGWQLTEPPFRVNG 156
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2817.7687.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4T6_ECTSI1.720e-4067.27Plastid protein-export protein secB, putative n=2 ... [more]
A0A836CL25_9STRA2.450e-2954.46Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2817contigH-paniculata_contig2817:6983..9163 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionPlastid protein-export protein secB, putative
Ec32 orthologEc-20_000420.1
Exons2
Model size1378
Cds size606
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2817.7687.1prot_H-paniculata_contig2817.7687.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2817 7679..9087 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929854.3685284-UTR-H-paniculata_contig2817:6982..76781622929854.3685284-UTR-H-paniculata_contig2817:6982..7678Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2817 6983..7678 -
1691481040.8717093-UTR-H-paniculata_contig2817:6982..76781691481040.8717093-UTR-H-paniculata_contig2817:6982..7678Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2817 6983..7678 -
1622929854.4247649-UTR-H-paniculata_contig2817:9087..91631622929854.4247649-UTR-H-paniculata_contig2817:9087..9163Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2817 9088..9163 -
1691481040.9064798-UTR-H-paniculata_contig2817:9087..91631691481040.9064798-UTR-H-paniculata_contig2817:9087..9163Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2817 9088..9163 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929854.3876827-CDS-H-paniculata_contig2817:7678..80531622929854.3876827-CDS-H-paniculata_contig2817:7678..8053Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2817 7679..8053 -
1691481040.8816712-CDS-H-paniculata_contig2817:7678..80531691481040.8816712-CDS-H-paniculata_contig2817:7678..8053Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2817 7679..8053 -
1622929854.4059496-CDS-H-paniculata_contig2817:8856..90871622929854.4059496-CDS-H-paniculata_contig2817:8856..9087Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2817 8857..9087 -
1691481040.8957179-CDS-H-paniculata_contig2817:8856..90871691481040.8957179-CDS-H-paniculata_contig2817:8856..9087Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2817 8857..9087 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2817.7687.1

>prot_H-paniculata_contig2817.7687.1 ID=prot_H-paniculata_contig2817.7687.1|Name=mRNA_H-paniculata_contig2817.7687.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=202bp
MSSFIGILASLLSVLPAFTDGFLVPIKLASLDFSAVARFDPSPTTSASHP
SSVNVNWRRRSCESSSPSRSRVAQLTMVSSEGDNAGAFASAGTAATEAAA
RSKQLNIACNDVVRTILKQNPGDSDAKALRARLEEQRHLLVSSGDEMSSL
FFENLLLVCDHELHPDVSQLQGEYGRAWKNILHYIEDAGWQLTDPPFTVM
G*
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mRNA from alignment at H-paniculata_contig2817:6983..9163-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2817.7687.1 ID=mRNA_H-paniculata_contig2817.7687.1|Name=mRNA_H-paniculata_contig2817.7687.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2181bp|location=Sequence derived from alignment at H-paniculata_contig2817:6983..9163- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACTAGCACGATGCATATACCTTATTGTGTTTGAGGTTGAACACTTCGTTG
TGAGGCTCACCAACGGCGGCATCGTCATGAGTTCATTCATAGGTATCTTA
GCAAGTCTTTTATCTGTGTTACCTGCCTTCACCGATGGCTTCTTAGTCCC
AATAAAACTGGCATCATTGGACTTTTCAGCAGTAGCTAGATTTGATCCGT
CTCCAACAACGAGTGCCTCACACCCGTCCAGCGTCAATGTCAACTGGCGA
CGACGCAGCTGCGAAAGCTCCTCCCCATCTAGGTCACGCGTTGCACAATT
AACAATGGTGAGATTTTTTTTCGCTGGTTGTATGCCGCTGAACGTATGCT
ACCCGCACTTGTCGCAATCATGTGTAATGCCAATTTACCAAGTTGCCAAC
ATTCTGCACTATGTCCTCTCCAAGAGTACAGATAGAAACATGCGCATAAC
TATGAAGTGTTGTACGTGGATTCTATTTGATCATACTGTACTATTCAATC
TAGATACGCATCTGGCACTTAGGAGTCTCATATGTTCGATCATAGAACGC
GTTTGCCGGAGAAAGGGGGATTCCTCCCTCGCCACTGGAGAAAGTCGTCT
CGTGTAATACACGACAATTGATGTACACACAAGTGCATGCTTCGGGCTCA
TATGCGTGAACTATAAGTTTGACAGGATTTGATCGCACCCAGCCCCTCAC
TCTTGAACTGTCCCTCTTGAAATGTCGAGCTAACTATGTGCGAGGTAAAA
ATGATGAACGAATGTGCTTAGATCCTAGCGTACGGAGGGTTGCTAGCGTC
CGCTCCTATGTGCACAGTCTCTCATACATCACATACTCTCGAACGCGATT
TACTCCAGCAGTACAGAAGAATGTTAGCGCGGACCCAAGGAAACAGGTGT
AGTAATCAAAATCGGTGTTCCTTTCGGGGAGTTCCATTCGACCAAACGCT
TGATTTTGATCTCGGCGAACACAACGATGTTTCAGCAGTTCCCTTGAACG
CAGTCAGCACGACGAGAAGTACCTGCTGACAGACACAACAAGCGTGAGGC
TGAGCCAGTCGTCTCTTGGCGAAAACTAAGAGAGGAATTCTCTACACAAT
GTTGTCACAGGTGTCGAGTGAAGGAGATAACGCAGGGGCATTTGCATCAG
CAGGGACAGCAGCTACTGAAGCGGCCGCTCGAAGCAAGCAACTTAACATT
GCCTGCAACGACGTCGTTCGTACGATCCTCAAGCAAAACCCGGGAGACTC
AGACGCAAAAGCCCTCCGGGCTAGGTTGGAGGAGCAGAGGCACCTCTTGG
TGTCTTCTGGCGACGAAATGTCTTCGCTTTTCTTCGAGAACTTGTTGCTT
GTGTGCGACCACGAACTGCACCCGGACGTGAGCCAGTTGCAGGGCGAGTA
CGGCAGGGCGTGGAAGAATATTTTGCACTATATTGAGGATGCTGGATGGC
AACTGACAGATCCTCCCTTCACCGTCATGGGGTAACGATGTCGCCACGGA
TGCATTTAGAGCATACGTACATGTTTTTGGATGTGATTCAGCGATATCGC
AGTTGTTTTTTTTCAAGTGTGCGTGGCGTCGAGTGGAGCGATGGGTGGTG
ACATGGTGTGAGATGTTCGCCCATTCTTTACCCCGTCTTCGGGTGTTGCT
CTGTCTCGGTTGAATGTCTCCTGAATTGCGTTCATCAGTTTGCCCAGTGT
GGGTACTCTGACCGTACATCAATAGGAGCTTACGGGCGTAATCTGTACTC
GTCGCGTTGGCAAGGCAGCCAATGCTGTAGAACAGCAGTGCAGTGAGGTC
TTATTTTTCATCCCTCTGAGTTGGCGCGATAGTTTGTCAGGGGATATGGG
CATGGTATTTTCGTTTTGAAGAGGTGGTTGCCCCTAAGCTCTCCGAAGGC
GCAGGGCAAGAACGTGAGTCTGATCATGTTGATGGTAATAGAGATTTGCT
GTAAATGTTGCGTGAGATGGCCAAACTACGAAGGGGGGCGGCTGCTTGCC
GGCACAGCAGCAACCCGCCTGTTTTTAGTCAAACCTCACATTTTCCGACG
CTTGGGTACTACATACTAGTGTAGACATTTGGGCGCCTTCGTGCACTTTG
AAGCCCTCTTTTTTTCATCTGAAACGTTTTTGTTTTTCAAATTTTCTCCC
TCTACCCGATGAAAAAAAATCCCATCATTTT
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Coding sequence (CDS) from alignment at H-paniculata_contig2817:6983..9163-

>mRNA_H-paniculata_contig2817.7687.1 ID=mRNA_H-paniculata_contig2817.7687.1|Name=mRNA_H-paniculata_contig2817.7687.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1212bp|location=Sequence derived from alignment at H-paniculata_contig2817:6983..9163- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGTTCATTCATAGGTATCTTAGCAAGTCTTTTATCTGTGTTACCTGC
CTTCACCGATGGCTTCTTAGTCCCAATAAAACTGGCATCATTGGACTTTT
CAGCAGTAGCTAGATTTGATCCGTCTCCAACAACGAGTGCCTCACACCCG
TCCAGCGTCAATGTCAACTGGCGACGACGCAGCTGCGAAAGCTCCTCCCC
ATCTAGGTCACGCGTTGCACAATTAACAATGATGAGTTCATTCATAGGTA
TCTTAGCAAGTCTTTTATCTGTGTTACCTGCCTTCACCGATGGCTTCTTA
GTCCCAATAAAACTGGCATCATTGGACTTTTCAGCAGTAGCTAGATTTGA
TCCGTCTCCAACAACGAGTGCCTCACACCCGTCCAGCGTCAATGTCAACT
GGCGACGACGCAGCTGCGAAAGCTCCTCCCCATCTAGGTCACGCGTTGCA
CAATTAACAATGGTGTCGAGTGAAGGAGATAACGCAGGGGCATTTGCATC
AGCAGGGACAGCAGCTACTGAAGCGGCCGCTCGAAGCAAGCAACTTAACA
TTGCCTGCAACGACGTCGTTCGTACGATCCTCAAGCAAAACCCGGGAGAC
TCAGACGCAAAAGCCCTCCGGGCTAGGTTGGAGGAGCAGAGGCACCTCTT
GGTGTCTTCTGGCGACGAAATGTCTTCGCTTTTCTTCGAGAACTTGTTGC
TTGTGTGCGACCACGAACTGCACCCGGACGTGAGCCAGTTGCAGGGCGAG
TACGGCAGGGCGTGGAAGAATATTTTGCACTATATTGAGGATGCTGGATG
GCAACTGACAGATCCTCCCTTCACCGTCATGGGGTAAGTGTCGAGTGAAG
GAGATAACGCAGGGGCATTTGCATCAGCAGGGACAGCAGCTACTGAAGCG
GCCGCTCGAAGCAAGCAACTTAACATTGCCTGCAACGACGTCGTTCGTAC
GATCCTCAAGCAAAACCCGGGAGACTCAGACGCAAAAGCCCTCCGGGCTA
GGTTGGAGGAGCAGAGGCACCTCTTGGTGTCTTCTGGCGACGAAATGTCT
TCGCTTTTCTTCGAGAACTTGTTGCTTGTGTGCGACCACGAACTGCACCC
GGACGTGAGCCAGTTGCAGGGCGAGTACGGCAGGGCGTGGAAGAATATTT
TGCACTATATTGAGGATGCTGGATGGCAACTGACAGATCCTCCCTTCACC
GTCATGGGGTAA
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