mRNA_H-paniculata_contig2815.7683.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2815.7683.1
Unique NamemRNA_H-paniculata_contig2815.7683.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2815.7683.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2815contigH-paniculata_contig2815:11064..11614 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size553
Cds size360
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929853.9982502-CDS-H-paniculata_contig2815:11063..114231622929853.9982502-CDS-H-paniculata_contig2815:11063..11423Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2815 11064..11423 +
1691481040.7382643-CDS-H-paniculata_contig2815:11063..114231691481040.7382643-CDS-H-paniculata_contig2815:11063..11423Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2815 11064..11423 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929854.016438-UTR-H-paniculata_contig2815:11423..116141622929854.016438-UTR-H-paniculata_contig2815:11423..11614Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2815 11424..11614 +
1691481040.7501066-UTR-H-paniculata_contig2815:11423..116141691481040.7501066-UTR-H-paniculata_contig2815:11423..11614Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2815 11424..11614 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2815.7683.1prot_H-paniculata_contig2815.7683.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2815 11064..11423 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2815.7683.1

>prot_H-paniculata_contig2815.7683.1 ID=prot_H-paniculata_contig2815.7683.1|Name=mRNA_H-paniculata_contig2815.7683.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=120bp
LAAVVIFLAVCSHVHCTPTVCALRYSCAVVSTWRKTWSLTEGPRQSVWYQ
GNTRKKEPTHPRKKQKTSRCDVQLKSSKDTVSKNKQNHKSTPLWQLLSLP
LLHHLPVSSNTAKHKIELQ*
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mRNA from alignment at H-paniculata_contig2815:11064..11614+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2815.7683.1 ID=mRNA_H-paniculata_contig2815.7683.1|Name=mRNA_H-paniculata_contig2815.7683.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=551bp|location=Sequence derived from alignment at H-paniculata_contig2815:11064..11614+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTGCGGCTGTTGTCATATTCCTTGCTGTTTGTTCCCACGTCCACTGTAC
ACCTACTGTTTGTGCGCTTCGTTATTCGTGTGCTGTAGTCAGTACATGGA
GGAAGACCTGGTCCCTTACAGAAGGGCCGCGGCAAAGTGTATGGTACCAA
GGTAACACCAGAAAGAAAGAGCCCACCCATCCTCGTAAAAAACAGAAAAC
CAGTAGATGTGATGTCCAACTAAAAAGTTCGAAGGACACGGTTTCAAAAA
ACAAACAAAACCACAAATCGACCCCACTTTGGCAGCTCCTTTCCCTTCCA
CTCCTCCACCATCTCCCGGTCAGCAGCAATACAGCAAAACACAAAATTGA
ATTACAGTAAAAGCACCATGCTTGTTGCTATTTACGAACGCCTCCCCAAA
CTCCTGGCCCACAGCACACAAACGCAAACATCCCCTCTCAACAAAATCCT
GTAAGACTAACCTATCACAGTGCACGAGAGATAGCTAGCTTCAAGTACTG
GGGGGGGGGGGGGGTAGACACCGTTAATCCGAGGCTGGATGTACAACGGT
G
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Coding sequence (CDS) from alignment at H-paniculata_contig2815:11064..11614+

>mRNA_H-paniculata_contig2815.7683.1 ID=mRNA_H-paniculata_contig2815.7683.1|Name=mRNA_H-paniculata_contig2815.7683.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=720bp|location=Sequence derived from alignment at H-paniculata_contig2815:11064..11614+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTGCGGCTGTTGTCATATTCCTTGCTGTTTGTTCCCACGTCCACTGTAC
ACCTACTGTTTGTGCGCTTCGTTATTCGTGTGCTGTAGTCAGTACATGGA
GGAAGACCTGGTCCCTTACAGAAGGGCCGCGGCAAAGTGTATGGTACCAA
GGTAACACCAGAAAGAAAGAGCCCACCCATCCTCGTAAAAAACAGAAAAC
CAGTAGATGTGATGTCCAACTAAAAAGTTCGAAGGACACGGTTTCAAAAA
ACAAACAAAACCACAAATCGACCCCACTTTGGCAGCTCCTTTCCCTTCCA
CTCCTCCACCATCTCCCGGTCAGCAGCAATACAGCAAAACACAAAATTGA
ATTACAGTAACTTGCGGCTGTTGTCATATTCCTTGCTGTTTGTTCCCACG
TCCACTGTACACCTACTGTTTGTGCGCTTCGTTATTCGTGTGCTGTAGTC
AGTACATGGAGGAAGACCTGGTCCCTTACAGAAGGGCCGCGGCAAAGTGT
ATGGTACCAAGGTAACACCAGAAAGAAAGAGCCCACCCATCCTCGTAAAA
AACAGAAAACCAGTAGATGTGATGTCCAACTAAAAAGTTCGAAGGACACG
GTTTCAAAAAACAAACAAAACCACAAATCGACCCCACTTTGGCAGCTCCT
TTCCCTTCCACTCCTCCACCATCTCCCGGTCAGCAGCAATACAGCAAAAC
ACAAAATTGAATTACAGTAA
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