mRNA_H-paniculata_contig2815.7682.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2815.7682.1
Unique NamemRNA_H-paniculata_contig2815.7682.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2815.7682.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2815contigH-paniculata_contig2815:5051..5895 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size552
Cds size429
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2815.7682.1prot_H-paniculata_contig2815.7682.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2815 5055..5776 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929853.7934823-UTR-H-paniculata_contig2815:5050..50541622929853.7934823-UTR-H-paniculata_contig2815:5050..5054Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2815 5051..5054 +
1691481040.6513608-UTR-H-paniculata_contig2815:5050..50541691481040.6513608-UTR-H-paniculata_contig2815:5050..5054Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2815 5051..5054 +
1622929853.868633-UTR-H-paniculata_contig2815:5776..58951622929853.868633-UTR-H-paniculata_contig2815:5776..5895Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2815 5777..5895 +
1691481040.6915946-UTR-H-paniculata_contig2815:5776..58951691481040.6915946-UTR-H-paniculata_contig2815:5776..5895Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2815 5777..5895 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929853.810252-CDS-H-paniculata_contig2815:5054..54171622929853.810252-CDS-H-paniculata_contig2815:5054..5417Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2815 5055..5417 +
1691481040.6623478-CDS-H-paniculata_contig2815:5054..54171691481040.6623478-CDS-H-paniculata_contig2815:5054..5417Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2815 5055..5417 +
1622929853.8561811-CDS-H-paniculata_contig2815:5710..57761622929853.8561811-CDS-H-paniculata_contig2815:5710..5776Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2815 5711..5776 +
1691481040.675687-CDS-H-paniculata_contig2815:5710..57761691481040.675687-CDS-H-paniculata_contig2815:5710..5776Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2815 5711..5776 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2815.7682.1

>prot_H-paniculata_contig2815.7682.1 ID=prot_H-paniculata_contig2815.7682.1|Name=mRNA_H-paniculata_contig2815.7682.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=143bp
MVLALNPGCRSLGYIGKLSGTTSVVDDVKRKVWAQLKALVEEVMVAERAP
ASAVRGPGEDDGDRAQKRLKFTTMWDKDDLDIMVAGMFDDPVGGSDEDDE
EREITPEEEAADVIKTWRQATIPLQYRGINSGKEVGTFWRTH*
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mRNA from alignment at H-paniculata_contig2815:5051..5895+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2815.7682.1 ID=mRNA_H-paniculata_contig2815.7682.1|Name=mRNA_H-paniculata_contig2815.7682.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=845bp|location=Sequence derived from alignment at H-paniculata_contig2815:5051..5895+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGATATGGTGCTCGCCCTTAACCCTGGTTGCCGCTCCCTCGGCTACATCG
GCAAGTTGTCGGGTACAACGAGTGTCGTAGATGACGTGAAGCGTAAAGTG
TGGGCCCAGCTGAAGGCACTAGTTGAGGAGGTGATGGTGGCAGAGCGAGC
GCCAGCTTCTGCCGTAAGAGGGCCTGGAGAAGATGATGGCGACCGTGCTC
AGAAACGCTTGAAGTTCACAACAATGTGGGATAAGGACGACCTGGATATA
ATGGTGGCCGGCATGTTCGATGACCCAGTTGGTGGAAGCGACGAGGACGA
TGAAGAGAGGGAGATTACACCTGAAGAGGAGGCTGCAGATGTGATCAAGA
CTTGGCGACAAGCAACGGTGAATACTTGTTTTTGTTTGGCCTCCGCTGAA
GCTCGCGTTTCGTGTCCGTTTCCATTGGAAGCTTGAGGCAAAACCACTGT
ATCGCGGCCTTTACGACTCACTCAGTGCGGTAGTGTTGTATTAAGGACTG
GCTTCAGTCGCCACGACTTGTCCAATTTCTGCGTTCCCAGAGCAAGGCGA
TGGTGTAGCCATTCTCAGATCTTGATATTCATCCTCATGACGTGTTCACG
CAACACTGTGGCGCTCGGCTCATCGACGGATATTTTTTTTTCATCTTTTG
TGCTGTACAGATTCCACTTCAATATCGGGGAATCAACAGCGGCAAGGAAG
TGGGAACTTTCTGGCGTACGCACTAAGGCAGAAGCTCAGATTCCTGAGTA
AGGTGGCACACAGTGCGTTGGGCGCACTGGCCTCGTCAGTGATTTTTGGA
GCGTGACTTCAGCGAAGCAGGCAGGCTCATTAATCGTCAACGGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig2815:5051..5895+

>mRNA_H-paniculata_contig2815.7682.1 ID=mRNA_H-paniculata_contig2815.7682.1|Name=mRNA_H-paniculata_contig2815.7682.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=858bp|location=Sequence derived from alignment at H-paniculata_contig2815:5051..5895+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGCTCGCCCTTAACCCTGGTTGCCGCTCCCTCGGCTACATCGGCAA
GTTGTCGGGTACAACGAGTGTCGTAGATGACGTGAAGCGTAAAGTGTGGG
CCCAGCTGAAGGCACTAGTTGAGGAGGTGATGGTGGCAGAGCGAGCGCCA
GCTTCTGCCGTAAGAGGGCCTGGAGAAGATGATGGCGACCGTGCTCAGAA
ACGCTTGAAGTTCACAACAATGTGGGATAAGGACGACCTGGATATAATGG
TGGCCGGCATGTTCGATGACCCAGTTGGTGGAAGCGACGAGGACGATGAA
GAGAGGGAGATTACACCTGAAGAGGAGGCTGCAGATGTGATCAAGACTTG
GCGACAAGCAACGATGGTGCTCGCCCTTAACCCTGGTTGCCGCTCCCTCG
GCTACATCGGCAAGTTGTCGGGTACAACGAGTGTCGTAGATGACGTGAAG
CGTAAAGTGTGGGCCCAGCTGAAGGCACTAGTTGAGGAGGTGATGGTGGC
AGAGCGAGCGCCAGCTTCTGCCGTAAGAGGGCCTGGAGAAGATGATGGCG
ACCGTGCTCAGAAACGCTTGAAGTTCACAACAATGTGGGATAAGGACGAC
CTGGATATAATGGTGGCCGGCATGTTCGATGACCCAGTTGGTGGAAGCGA
CGAGGACGATGAAGAGAGGGAGATTACACCTGAAGAGGAGGCTGCAGATG
TGATCAAGACTTGGCGACAAGCAACGATTCCACTTCAATATCGGGGAATC
AACAGCGGCAAGGAAGTGGGAACTTTCTGGCGTACGCACTAAATTCCACT
TCAATATCGGGGAATCAACAGCGGCAAGGAAGTGGGAACTTTCTGGCGTA
CGCACTAA
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