prot_H-paniculata_contig2814.7681.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2814.7681.1
Unique Nameprot_H-paniculata_contig2814.7681.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length812
Homology
BLAST of mRNA_H-paniculata_contig2814.7681.1 vs. uniprot
Match: A0A6H5KWK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWK9_9PHAE)

HSP 1 Score: 205 bits (522), Expect = 2.010e-53
Identity = 206/611 (33.72%), Postives = 260/611 (42.55%), Query Frame = 0
Query:  223 GLITARSVEALCESQCSKSLEYLGLRMRNQVLMDGLRILGNGIPGLRRLDLAGLYHINDAVLDLIASKLSLTHINLSGCREVTSRGVSSVARSSPELAWVSLHNTGVRDDGVRALCDSCLELRCVNLSLTAVTGRCLRSLGGRDSLRWINLRCCPALTNPDTLASVV-ELRRQLSARGPRYDRGVALVMERPQSQV-----------------SGASPGRPAVGYARSNDNSGGDRRIRKFYDRNLEGEEESV--------GDGGSYR--SRPRDEEQTCLGDGGVGVAXXXXXXXXXXXXXXXXXXXCDGVSMPRSETVTAKARLERETAVLSVVAAKAGAAA------QANTVAASPAAGTHASSEDGREGEGPKSASETVVPSEEGATHGAAQEQRQYDRRQRAGADEGYPMAISSTGMNPSRHTTATVXXXXXXXXXXXXXXTPAAVLPVDIQQSSPPQTRKGPLLPVGVGDLSLGRRHHRKGGERPHIADPTAVSSVSAGXXXXXXXXXXXXXXXXGGGRELLVSETGVLSFDWDTVPRGSRVGELGAWRGFFGLPGDVAREVILELHPFVTIEFVAKRLGAPMRGRP--RRPHHGYQVHTSKFGQ 797
            G IT +++  L  + C+  L  LGLR  + V    LR LG   P LRRLDLAGL  ++D VL  ++S LSLTHI++S    V+  GVS++A  SPELA +SLH   + D+ VRALCD+C  LR +NLSLT VT R LR L  +DSLRW+N+RCC  + N    A V+ + R +LS      DRG  L MERP+ Q                  SG S      GY    D+ G D  IR      L     S         G+GG          + + C G    G A                     G   P S       RL+   A L V   + G  A      +   + ASPA  T A    G   +G  +    V P    +T  A  +    D  +R     G  +     G   +   +A                 PA     D     PP     PLLP GVGDLSLGR  HR+ GE                                GGG +  V    V+ FDWDTVPRGS VG LG+W+GF GL GD+ + VI ELHP   +EF   R G  +   P  R   HGY V  S+  Q
Sbjct:    5 GSITGQALTTLSAAPCAPLLVCLGLRNLHCVGNMDLRALGTHFPSLRRLDLAGLVKVDDDVLRALSSTLSLTHIDISRAHRVSVSGVSALAVGSPELACISLHGIALVDEAVRALCDACPRLRHINLSLTRVTERSLRLLATKDSLRWVNVRCCSGIGNDAVTAKVLADFRSRLSPPKHPRDRGTVLGMERPEPQSRTPAPSCSRREPLGANSSGGSLDSGCGGYQGPPDDVGQDLAIRAQAALALRVSSPSSDRLHQLAPGNGGXXXXTKTASSDVEYCNGSIVRGDAPIDPNGKAGGATK--------GGRAPPSAEGGYTRRLDTPGAAL-VSFGEGGEIAPRPSCRRPGGIRASPAKPTPAERLAGDSSQG--TTLSPVAPLLLASTSPAPVD---LDTGERGKGRRGAAIRQEGKGHALAEEASAAQSTAAEEEAVPSLAGEPAGASSRD----HPP-----PLLPTGVGDLSLGR--HRRHGESRGSPSSEGTKRGEGSTGTGFQDGGRGVAKGRGGGGDRRVEGEVVVPFDWDTVPRGSGVGVLGSWKGFRGLSGDLVKNVIRELHPHAQVEF---RPGYDVVFGPHSRTNTHGYLVAKSRAAQ 587          
BLAST of mRNA_H-paniculata_contig2814.7681.1 vs. uniprot
Match: D7FM12_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM12_ECTSI)

HSP 1 Score: 184 bits (466), Expect = 3.530e-45
Identity = 125/312 (40.06%), Postives = 164/312 (52.56%), Query Frame = 0
Query:  157 DGLQYVLCNSTLKCLISGIGSGLVSLRLFDCVSISDEGIAAVADSCPLLRELDIGTDLKPDPRRWL--GLITARSVEALCESQCSKSLEYLGLRMRNQVLMDGLRILGNGIPGLRRLDLAGLYHINDAVLDLIASKLSLTHINLS----GCREVTSR---------------------------------------GVSSVARSSPELAWVSLHNTGVRDDGVRALCDSCLELRCVNLSLTAVTGRCLRSLGGRDSLRWINLRCCPALTNPDTLASVV-ELRRQLSARGPRYDRGVALVMERPQSQVSGASP 422
            D   + L +  L  L++G+G  L+SL+L D   I+DEGI A+A +C  L+ELDIG        R +  G IT +++  L  + C+  L  LGLR R+ V    LR LG   P LRRLDLAGL  ++D VL  +AS LSLTHI++S      R+V  R                                       GVS++A  SPELA +SLH T + D  VRALCD+C  LR +NLSLT VT R LR L  +DSLRW+N+RCC  + N    A ++   R +LS      DRG  L MERP+ Q    +P
Sbjct:  155 DNTHHRLHDYHLVSLLTGLGGRLLSLQLRDRPFITDEGIGAIAVACTQLQELDIGRRTGDTGNRMMRTGSITGQALATLSAAPCAPLLVCLGLRNRHCVGNMDLRALGTHFPSLRRLDLAGLVKVDDDVLRALASTLSLTHIDISRFHGNIRDVLDRHHPESRCPRHAHTANPRLPTHGAPQPGLVRHRAHRVSVSGVSALAVGSPELACISLHGTALADGAVRALCDACPRLRHINLSLTRVTERSLRLLAMKDSLRWVNVRCCSGIGNDAVTAKILANFRSRLSPPKHPRDRGTVLGMERPEPQSRTRAP 466          
BLAST of mRNA_H-paniculata_contig2814.7681.1 vs. uniprot
Match: R7QIH1_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QIH1_CHOCR)

HSP 1 Score: 58.9 bits (141), Expect = 2.120e-5
Identity = 45/175 (25.71%), Postives = 83/175 (47.43%), Query Frame = 0
Query:  168 LKCLISGIGSGLVSLRLFDCVSISDEGIAAVADSCPLLRELDIG-TDLKPDPRRWLGLITARSVEALCESQCSKSLEYLGLRMRNQVLMDGLRILGNGIPGLRRLDLAGLYHINDAVLDLIASKL--SLTHINLSGCREVTSRGVSSVARSSPELAWVSLHN-TGVRDDGVRALC 338
            L+ +  G G G+  L L  C +IS    A +   C  LR LD+  TD+  D    L   T RS            L++L L   N++    +  + +  P LR LD+  +  ++DA ++ + S+L  S+  + LS C+ ++  G++++      +  ++L   + + D+G+  LC
Sbjct:   73 LEAICKGNGKGIHRLGLRRCKAISKRAFAQIPRQCSRLRSLDMSHTDIGDDFVLELTKNTGRS------------LQFLALHGCNKLTARSIHAIADRCPHLRFLDIGSIAAVDDAAIEYLVSRLGGSIRTMVLSNCKNLSDSGMAALGVECKAIMSLTLRGLSSITDNGLYKLC 235          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2814.7681.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KWK9_9PHAE2.010e-5333.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FM12_ECTSI3.530e-4540.06Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
R7QIH1_CHOCR2.120e-525.71Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006553Leucine-rich repeat, cysteine-containing subtypeSMARTSM00367LRR_CC_2coord: 290..315
e-value: 0.054
score: 22.6
coord: 202..236
e-value: 150.0
score: 5.3
coord: 176..201
e-value: 2.9
score: 16.9
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 81..403
e-value: 5.0E-37
score: 129.4
NoneNo IPR availablePANTHERPTHR13382MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR Bcoord: 88..319
coord: 239..381
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 106..382

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2814contigH-paniculata_contig2814:3470..13558 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2814.7681.1mRNA_H-paniculata_contig2814.7681.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2814 3069..13763 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2814.7681.1 ID=prot_H-paniculata_contig2814.7681.1|Name=mRNA_H-paniculata_contig2814.7681.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=812bp
MTGKTAPMVTARWENENGPPAAVGAIGGASAQGPRVEEGNAGASSGLVEG
KLAEFNGGRGEGSLSRLGPGDGSGEADEEGRRVEQAPVLRGLAVSSDALR
DEGAQQALESHGSGLRVLSLSGCRGLVDPKTIEVIRRRCSGLVRLDLSNT
LTSRPRDGLQYVLCNSTLKCLISGIGSGLVSLRLFDCVSISDEGIAAVAD
SCPLLRELDIGTDLKPDPRRWLGLITARSVEALCESQCSKSLEYLGLRMR
NQVLMDGLRILGNGIPGLRRLDLAGLYHINDAVLDLIASKLSLTHINLSG
CREVTSRGVSSVARSSPELAWVSLHNTGVRDDGVRALCDSCLELRCVNLS
LTAVTGRCLRSLGGRDSLRWINLRCCPALTNPDTLASVVELRRQLSARGP
RYDRGVALVMERPQSQVSGASPGRPAVGYARSNDNSGGDRRIRKFYDRNL
EGEEESVGDGGSYRSRPRDEEQTCLGDGGVGVAGSGGGGGSSGSDNGDGG
GGCDGVSMPRSETVTAKARLERETAVLSVVAAKAGAAAQANTVAASPAAG
THASSEDGREGEGPKSASETVVPSEEGATHGAAQEQRQYDRRQRAGADEG
YPMAISSTGMNPSRHTTATVVAAASNTTSDQAAATPAAVLPVDIQQSSPP
QTRKGPLLPVGVGDLSLGRRHHRKGGERPHIADPTAVSSVSAGAGAGVGA
GVAAAARGEGGGRELLVSETGVLSFDWDTVPRGSRVGELGAWRGFFGLPG
DVAREVILELHPFVTIEFVAKRLGAPMRGRPRRPHHGYQVHTSKFGQAWL
ALTVDEQGCVC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006553Leu-rich_rpt_Cys-con_subtyp
IPR032675LRR_dom_sf