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Homology
BLAST of mRNA_H-paniculata_contig2813.7680.1 vs. uniprot
Match: D8LDU9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU9_ECTSI) HSP 1 Score: 135 bits (339), Expect = 5.170e-32 Identity = 58/71 (81.69%), Postives = 66/71 (92.96%), Query Frame = 3
Query: 15 GAAGSSMYCVCHSSDEGFMVECSDGTGGCGGWFHPECCNLVLTEEQKEKSAMKKFKFVCSLCVKLRQKAEK 227
G +GSS+YCVCHSSDEGFMVECSDGTGGCGGWFHPECCNL L+ EQ++K+A+KKFKFVCSLCVK+R K EK
Sbjct: 118 GVSGSSIYCVCHSSDEGFMVECSDGTGGCGGWFHPECCNLELSPEQRQKNALKKFKFVCSLCVKVRLKVEK 188
BLAST of mRNA_H-paniculata_contig2813.7680.1 vs. uniprot
Match: A0A6H5KVU7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVU7_9PHAE) HSP 1 Score: 130 bits (327), Expect = 2.040e-30 Identity = 55/66 (83.33%), Postives = 63/66 (95.45%), Query Frame = 3
Query: 15 GAAGSSMYCVCHSSDEGFMVECSDGTGGCGGWFHPECCNLVLTEEQKEKSAMKKFKFVCSLCVKLR 212
G +GSS+YCVCHSSDEGFMVECSDGTGGCGGWFHPECCNL L+ EQ++K+A+KKFKFVCSLCVK+R
Sbjct: 82 GVSGSSIYCVCHSSDEGFMVECSDGTGGCGGWFHPECCNLELSPEQRQKNALKKFKFVCSLCVKVR 147
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 128.3 |
| Seed ortholog evalue | 5.5e-27 |
| Seed eggNOG ortholog | 2880.D8LDU9 |
| KEGG ko | ko:K14436,ko:K14437 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | helicase activity |
| EggNOG OGs | COG0553@1,KOG0384@2759 |
| EC | 3.6.4.12 |
| COG Functional cat. | KL |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko01000,ko03036 |
| Exons | 3 |
| Model size | 828 |
| Cds size | 795 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2813.7680.1 >prot_H-paniculata_contig2813.7680.1 ID=prot_H-paniculata_contig2813.7680.1|Name=mRNA_H-paniculata_contig2813.7680.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=265bp
MYCVCHSSDEGFMVECSDGTGGCGGWFHPECCNLVLTEEQKEKSAMKKFK
FVCSLCVKLRQKAEKRKGKGKEKDKGGKAAKTGKGNSSNSKAVADGDAEI
LASPSSAGGGAGSSSSSRKTAKSPRIKLKLKIPPTAGQNAAAGSVTGSPK
PSKKKSRGVTSPSSTTNTDDDDEDYDDDDHDDDGANNHAAAAAAAAAAAA
ASSSPVSPPRGKKMPPPLSTKPSLKRRRTSGSGGAGDVRKQSSGRGAAAA
AMADTTSEDSEAQEE back to topmRNA from alignment at H-paniculata_contig2813:15601..18511+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig2813.7680.1 ID=mRNA_H-paniculata_contig2813.7680.1|Name=mRNA_H-paniculata_contig2813.7680.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2911bp|location=Sequence derived from alignment at H-paniculata_contig2813:15601..18511+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGTGGGGATGCTGGTGCTGCGGGGAGCTCGATGTACTGCGTGTGTCAC
AGCTCTGACGAAGGGTTTATGGTGGAGTGCTCCGATGGGACGGGGGGTTG
CGGGGGGTGGTTTCACCCTGAGTGCTGCAACTTGGTGCTTACGGAGGAGC
AAAAAGAGAAGAGTAAGCCTTTTGTTGTTTTTTTTTGTGTTTTTTGGGGG
GGGTTGGTCGTGGTGGTGGTTGTAGTGTTGTTTCTGTTGGATGCTTATGA
TATTTTGCGTATGTATCTGCGATGTGTATTGCGTTCCTGGGAATCGATCG
GAGTTAAGCCATAGGCATGGCTATGCCGGGAAAATGCTATAGAATAGATA
ATAAAAAAATATATGTTGGCCGAGTTTGTTTTTTTTTCATTATGATTTTT
CAAATTAGGGGATAGTGCAATTTTTGCGTATCGATGTGCAATGTCCAACT
GTGCTGTCTTTGGAGCCAGGGGATGTTGAACGGTTTACGAAGATAGGGAT
GTTAAAAACAGATGACACATGGTGCGGATCGGATGATCGTTCACAGCTCG
TATGGACGGATCATTTTGCACGGATAGGTCGCGAGGTCCGTCCGTACAGC
GTTTTTGATCCATGTACATTTGTCCGCAACTGTTTCATATCCTATAGATT
CTAAGTGCATTTTTGTCCATCAAGAGTCGGTACGAGCTGTAAGATGTGCT
TGTCAAAGAATCCCTAATTATTTTAAATTAGAATGCTCTACTTAAATAGA
TTTCGCAGAAATCCAGCTATAACCGATTTTGATTGGCCTTTCACCCCTAA
ACTTGAGTCATCCCAGCATTTTGCCACATACACGGGTTCGGCCCTTCAAA
GAATGTTACCATTACAATATCAGCCTGCTCAAGTTTAGATCAACCGGTTT
CGGGTATTTAACAACAGACTTTAAAATGCTGTAAAAGCTCGATTTATTTT
CGCCTACGCTTATCACAGCTTAAGCTTGCTATAATTATATGCACTGACTT
GGATCTTCCTACCGACGCTATGTCATGCTGGTTTGTTTGAGGTGTAGTTC
TATAAGTACAGGGTGAAACGTCTAACGAAAAGAAAATAGCTCGCATTTTC
AAGAAAATATTAATCGCTAACAGTTTTTTTTTTATGTTATGTTTTTGTTG
AGTTTAGATTAAAAAAGGGGAAAAAAAATGCTTCATTTTTAGTTTACTGG
TGTATTCTTTTTCATTTTTAAAAACTCATTTTTTTTTTTTTTTTTTCCGT
ATATAGGTCCGTTCGTGCTCATGACAAGTACATATCCGTGTTATTCGATA
CGGTAAGTTTGATGTTGATCGTTCGTGTCGGAACATTTTTTTCAACTCTG
TACTCGAGTAACTCCGCAACTAGAATATTTAGGCAAGCGCAGCGAGCAGT
GTTATTTGCTACGCGAACCCCCACAGTTGGGTGCAACGCATCCGTAGATT
GACGATAAGTACAGACTGTATGGGTGTAGTGTGGCCATGGTTATATTCCA
CTCCTAAATATTACACACATGAATGAACGTATCATCGACTAGTGGATGGC
CACGGATACGCTGGTGGCGTATCTGACGTAGACCCTTTCTCCTTCCCCCC
CCTGATCATGATCTCACGTTAGCAAATAGCATGAATAGGAACTAGTGGAT
ATATGTTACGAGTTTAACTCCCTCCCCACCCCTTCCGCTCGGATTCGCGA
TCGAAAATTCACTCGGATAGGAACAAGTCCCCGTCCTCCCTAGGGCGTGC
CAAACAATTGGTCATTCTCTAATTTTGCTGATGAATGCACACTATCAAAG
TTCGAGGTTACCTACATAATAACCTCAAAAAAGTACCTCCCCCTTCTCCC
CTTTGCCCCCTCCGCCCGTGTACCCCCCCCCCCCATGTAGGCGCCATGAA
GAAATTTAAGTTCGTATGCTCCTTGTGCGTGAAGCTCCGCCAAAAGGCCG
AGAAACGAAAGGGCAAAGGCAAAGAGAAGGACAAAGGTGGTAAAGCTGCG
AAGACCGGCAAAGGTAACAGTAGCAACAGCAAGGCCGTGGCGGACGGCGA
CGCCGAGATTCTGGCGTCACCTTCTAGTGCTGGTGGTGGCGCCGGCAGCA
GCAGCAGCAGCAGGAAGACGGCCAAGTAAGCTATTCGCATCCCCGATAAA
GAGTTTGTTTTCAAAAGTAAAACCACCTTTCAATCCTTGAGTTTAATTCT
CCGATTCAAGCTTCCTTCATCACGCTCGAAAGTTATAGCGTTTGTGAAAA
TGCGCTTTTTTTTTCTTGATTTTTTTCTTTTTTCTTTTTATCGGAACAAT
AATTTCACGTCAGTTAGGTTATTTTTTTCCTGTTATGTAAATTTTTTCGG
TACATGTTGCTGGAACACAGCAGCTCCGTTTGTACATACAAAGAAAAGGA
ACACGAGTTAATTAATGCTTCCGACGAAAATCGTACGCTCCGCTCTGTTA
TGTTTACCTCGGTGGTCGTGTCGGGGAGCAGATCTCCGAGGATCAAATTG
AAGCTTAAAATCCCGCCCACCGCAGGGCAAAACGCTGCCGCGGGCTCCGT
CACCGGCTCCCCCAAACCCTCCAAGAAAAAGTCACGCGGCGTGACATCGC
CATCATCCACTACTAACACCGACGATGATGATGAGGACTATGATGACGAT
GATCATGATGACGATGGGGCCAACAATCACGCTGCCGCCGCCGCAGCCGC
CGCCGCCGCTGCTGCTGCTTCTTCATCTCCTGTTTCTCCGCCAAGAGGCA
AAAAAATGCCTCCACCCCTCTCTACAAAACCTTCCCTGAAACGCCGGCGG
ACCTCGGGATCCGGTGGAGCCGGGGACGTACGTAAGCAATCCAGCGGCCG
CGGAGCGGCTGCGGCGGCAATGGCAGATACAACGAGCGAAGATTCAGAAG
CACAAGAGGAG back to topCoding sequence (CDS) from alignment at H-paniculata_contig2813:15601..18511+ >mRNA_H-paniculata_contig2813.7680.1 ID=mRNA_H-paniculata_contig2813.7680.1|Name=mRNA_H-paniculata_contig2813.7680.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1590bp|location=Sequence derived from alignment at H-paniculata_contig2813:15601..18511+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTACTGCGTGTGTCACAGCTCTGACGAAGGGTTTATGGTGGAGTGCTC
CGATGGGACGGGGGGTTGCGGGGGGTGGTTTCACCCTGAGTGCTGCAACT
TGGTGCTTACGGAGGAGCAAAAAGAGAAGAATGTACTGCGTGTGTCACAG
CTCTGACGAAGGGTTTATGGTGGAGTGCTCCGATGGGACGGGGGGTTGCG
GGGGGTGGTTTCACCCTGAGTGCTGCAACTTGGTGCTTACGGAGGAGCAA
AAAGAGAAGAGCGCCATGAAGAAATTTAAGTTCGTATGCTCCTTGTGCGT
GAAGCTCCGCCAAAAGGCCGAGAAACGAAAGGGCAAAGGCAAAGAGAAGG
ACAAAGGTGGTAAAGCTGCGAAGACCGGCAAAGGTAACAGTAGCAACAGC
AAGGCCGTGGCGGACGGCGACGCCGAGATTCTGGCGTCACCTTCTAGTGC
TGGTGGTGGCGCCGGCAGCAGCAGCAGCAGCAGGAAGACGGCCAAGCGCC
ATGAAGAAATTTAAGTTCGTATGCTCCTTGTGCGTGAAGCTCCGCCAAAA
GGCCGAGAAACGAAAGGGCAAAGGCAAAGAGAAGGACAAAGGTGGTAAAG
CTGCGAAGACCGGCAAAGGTAACAGTAGCAACAGCAAGGCCGTGGCGGAC
GGCGACGCCGAGATTCTGGCGTCACCTTCTAGTGCTGGTGGTGGCGCCGG
CAGCAGCAGCAGCAGCAGGAAGACGGCCAAATCTCCGAGGATCAAATTGA
AGCTTAAAATCCCGCCCACCGCAGGGCAAAACGCTGCCGCGGGCTCCGTC
ACCGGCTCCCCCAAACCCTCCAAGAAAAAGTCACGCGGCGTGACATCGCC
ATCATCCACTACTAACACCGACGATGATGATGAGGACTATGATGACGATG
ATCATGATGACGATGGGGCCAACAATCACGCTGCCGCCGCCGCAGCCGCC
GCCGCCGCTGCTGCTGCTTCTTCATCTCCTGTTTCTCCGCCAAGAGGCAA
AAAAATGCCTCCACCCCTCTCTACAAAACCTTCCCTGAAACGCCGGCGGA
CCTCGGGATCCGGTGGAGCCGGGGACGTACGTAAGCAATCCAGCGGCCGC
GGAGCGGCTGCGGCGGCAATGGCAGATACAACGAGCGAAGATTCAGAAGC
ACAAGAGGAGATCTCCGAGGATCAAATTGAAGCTTAAAATCCCGCCCACC
GCAGGGCAAAACGCTGCCGCGGGCTCCGTCACCGGCTCCCCCAAACCCTC
CAAGAAAAAGTCACGCGGCGTGACATCGCCATCATCCACTACTAACACCG
ACGATGATGATGAGGACTATGATGACGATGATCATGATGACGATGGGGCC
AACAATCACGCTGCCGCCGCCGCAGCCGCCGCCGCCGCTGCTGCTGCTTC
TTCATCTCCTGTTTCTCCGCCAAGAGGCAAAAAAATGCCTCCACCCCTCT
CTACAAAACCTTCCCTGAAACGCCGGCGGACCTCGGGATCCGGTGGAGCC
GGGGACGTACGTAAGCAATCCAGCGGCCGCGGAGCGGCTGCGGCGGCAAT
GGCAGATACAACGAGCGAAGATTCAGAAGCACAAGAGGAG back to top
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