mRNA_H-paniculata_contig28110.7677.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig28110.7677.1
Unique NamemRNA_H-paniculata_contig28110.7677.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig28110.7677.1 vs. uniprot
Match: A0A151ITN2_9HYME (Copia protein n=1 Tax=Trachymyrmex cornetzi TaxID=471704 RepID=A0A151ITN2_9HYME)

HSP 1 Score: 57.4 bits (137), Expect = 3.770e-7
Identity = 33/97 (34.02%), Postives = 53/97 (54.64%), Query Frame = 1 
Query:   52 EVLSVDFEGLECREVGGMEIWICDIGATKHMTHDSDFRFDYQRCNG-HVRLADGNRLPIEGGGMLFLQFRFDSEVVLMKLTQVAFVPLLSHHLLSLG 339
            EV+  +   LE ++V     WI D GA++HMTH S++  + Q     HV L DG +  + G G +++Q   D + +   L  V +VP L+ +L S+G
Sbjct:  273 EVIEKEILNLEVKDV-----WILDSGASRHMTHRSNWISNLQTYKDEHVSLGDGTKCKVHGRGTVYIQRLVDGQWLDGVLEDVLYVPDLNKNLFSVG 364
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28110.7677.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A151ITN2_9HYME3.770e-734.02Copia protein n=1 Tax=Trachymyrmex cornetzi TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig28110contigH-paniculata_contig28110:2310..2669 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size360
Cds size360
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929853.1504798-CDS-H-paniculata_contig28110:2309..26691622929853.1504798-CDS-H-paniculata_contig28110:2309..2669Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28110 2310..2669 -
1691481040.2794912-CDS-H-paniculata_contig28110:2309..26691691481040.2794912-CDS-H-paniculata_contig28110:2309..2669Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28110 2310..2669 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig28110.7677.1prot_H-paniculata_contig28110.7677.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig28110 2310..2669 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig28110.7677.1

>prot_H-paniculata_contig28110.7677.1 ID=prot_H-paniculata_contig28110.7677.1|Name=mRNA_H-paniculata_contig28110.7677.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=120bp
CRRCGKRGHDLNACPQREVLSVDFEGLECREVGGMEIWICDIGATKHMTH
DSDFRFDYQRCNGHVRLADGNRLPIEGGGMLFLQFRFDSEVVLMKLTQVA
FVPLLSHHLLSLGKFADFGH
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mRNA from alignment at H-paniculata_contig28110:2310..2669-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig28110.7677.1 ID=mRNA_H-paniculata_contig28110.7677.1|Name=mRNA_H-paniculata_contig28110.7677.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=360bp|location=Sequence derived from alignment at H-paniculata_contig28110:2310..2669- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTCGGCGATGTGGTAAGCGTGGTCACGACTTGAACGCGTGCCCCCAGCG
AGAGGTTTTGTCCGTGGACTTTGAGGGGTTAGAATGTCGTGAAGTGGGGG
GGATGGAGATCTGGATATGTGATATTGGTGCAACGAAACACATGACCCAT
GATTCAGATTTTCGTTTTGACTACCAGCGATGTAATGGGCATGTACGCCT
TGCAGATGGCAACCGTCTCCCGATCGAAGGAGGCGGCATGCTGTTCCTTC
AATTTCGATTTGACTCCGAGGTTGTTTTGATGAAGTTAACTCAGGTTGCA
TTCGTACCACTCCTCAGTCATCACCTCCTATCTCTCGGGAAATTCGCGGA
CTTTGGTCAT
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Coding sequence (CDS) from alignment at H-paniculata_contig28110:2310..2669-

>mRNA_H-paniculata_contig28110.7677.1 ID=mRNA_H-paniculata_contig28110.7677.1|Name=mRNA_H-paniculata_contig28110.7677.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=720bp|location=Sequence derived from alignment at H-paniculata_contig28110:2310..2669- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTCGGCGATGTGGTAAGCGTGGTCACGACTTGAACGCGTGCCCCCAGCG
AGAGGTTTTGTCCGTGGACTTTGAGGGGTTAGAATGTCGTGAAGTGGGGG
GGATGGAGATCTGGATATGTGATATTGGTGCAACGAAACACATGACCCAT
GATTCAGATTTTCGTTTTGACTACCAGCGATGTAATGGGCATGTACGCCT
TGCAGATGGCAACCGTCTCCCGATCGAAGGAGGCGGCATGCTGTTCCTTC
AATTTCGATTTGACTCCGAGGTTGTTTTGATGAAGTTAACTCAGGTTGCA
TTCGTACCACTCCTCAGTCATCACCTCCTATCTCTCGGGAAATTCGCGGA
CTTTGGTCATTGTCGGCGATGTGGTAAGCGTGGTCACGACTTGAACGCGT
GCCCCCAGCGAGAGGTTTTGTCCGTGGACTTTGAGGGGTTAGAATGTCGT
GAAGTGGGGGGGATGGAGATCTGGATATGTGATATTGGTGCAACGAAACA
CATGACCCATGATTCAGATTTTCGTTTTGACTACCAGCGATGTAATGGGC
ATGTACGCCTTGCAGATGGCAACCGTCTCCCGATCGAAGGAGGCGGCATG
CTGTTCCTTCAATTTCGATTTGACTCCGAGGTTGTTTTGATGAAGTTAAC
TCAGGTTGCATTCGTACCACTCCTCAGTCATCACCTCCTATCTCTCGGGA
AATTCGCGGACTTTGGTCAT
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