mRNA_H-paniculata_contig281.7673.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig281.7673.1 vs. uniprot
Match: D7FSD2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSD2_ECTSI) HSP 1 Score: 324 bits (831), Expect = 6.410e-90 Identity = 362/1178 (30.73%), Postives = 492/1178 (41.77%), Query Frame = 1
Query: 502 ILEGQTYTLLLSDTEADRDRARASSVSRWSR-RSHADLPETAI-------AEKLEVGDFPLTAGGDVGEGTGV---------AESRQPAATADPSASGEDDEENIDTMSK-------IMAIIHRMSDYGMLSYEERCALESLTVAGDVVVNAAFNVGLESRDMDYMAALFTDLAALRLDNSQGERLLCDKREMLDVAQALHGAHEINKEQWLYLQNVILAGHEALNEPLSTYQLGKDRVRLADELKHLCGGAGGLDSHGRPVASLIHPHQQQPQQKLVSRSASRVSGPSPPTIASAAWAADVNEAQGIASSDGMGMKELVLQAGIHLADRGFIGALEASLLNEMVVDDRPVLVAICKKFVKDGNEVQLHDAVLRAARLEQHLCRTPMVSSHGSSPATAAGSQSTKDGNGQSFHAPRPAAAAAANVSQGQSASERAPFLAARSSTRVRGVPGGAAGREVIGVQGTIGGADGGGGILPAEFLRLVEVAVRRRVVDVEDGRILCAAFHSGVTGSGGRLEDLVHGAWRVYETTGDEEDAVDSLVRIVRLAIAPFKPDARPSVEQSRIAAGSTQMVVMSSADLRGEVAAAMLAIAAESATILLDKKRVTPEEASCLAFPSENGCAAVLRELALFERDKSKPRLLDAMEKLAKQEMSERSTEGRDSGPKEGRSSGSGIGGGDDNDDAXXXXXXXXXXXXXXXXXXXXXDCEEHANHDKSNDNGEDRNXXXXXXXXXXXXXXXXXXXXVTEFDGNGSPDHRAIQELLELVECISGDRRVSHEETLKLRELIYGQDPGLLRAHSDYVKDQDVNLLVGALERTAREYTVTTQAEPAAELVPFRPTQEAAAAAGGETNAQGRQQPLLREKAVLML------MHETHVLDTAETAHVQRLLAQEDPEVTAAFRSFDSTKNVPALVHALKTIL----------------------------------------------------------NTQNA-----GGHH----VAESVVSIVDGMGLSEGEAAALRLAIANNDANIRGAIELYRVDSDAQELQDTLARVARQVLQREVALRQEASDIDVAGAGLSAPAASTAPXXXXXXXXXXXXNVRQSTAPTHVADLAHGHRAEVFQALVQQLTMMDVIDDEQGKAIVERYREKDAVVLAALDVYQHEKDLAELVDTLRRLT 3744
+L ++Y+LLLSD E W R +SH +P T A + V F VG G G AE P ED EE+ D +K I+A I RM+ G+L+ ++R ALE+ VAGD V+NAAF V L S+D+DY++ALF D+A+ R + QG RLL KREMLD+ + L A E++ EQ +YLQN+IL +EA+++ Y+ +D VRLA+ LK LCG G VA++ L + +D M+ +L+ +L + +G EAS+LN M+ + PVLVA K F ++G +L+D V RAAR E + GS +G+ G+ Q R A+AAAA +A A TR +G GR R+ SG T T DE+ + R L +E R+ + Q +M D R V+ EEA CLA PS A+L+ L FE ++ RLL+A +AK EM +R+ + R+ G+D XXXXXXXXXXXX + S +GE+R XX D RA+ EL+EL +C++GD+ + +E L +LI + P +++A+ DY QDV LV AL V TQ GGE G ++P + MH+T VL ++ + LLAQEDP AAF +FDS+K+V +LV A+KTIL N N GG VAE+VVSIVDGMGL E EAAALRLAIAN D N++GA+EL+R+DSDAQEL+DT ARVAR VL+RE R P AS A S T D +A +FQ L+QQL + V+ + Q I++RYR KDAVV AALDVY++E D++ELVDTL+RLT
Sbjct: 1 MLGDRSYSLLLSDKEVS-----------WKRNKSHPGIPSTPTQGSPLGGASPISVTAFSSAEAIGVGAGGGQKSACGTLWGAEGETEKQGWRPGEEEEDVEEDEDGEAKGMGDKARIVAFIRRMTFNGLLAEDDRTALENSAVAGDAVINAAFAVALRSQDVDYLSALFKDIASNRRGSPQGMRLLEAKREMLDMVEVLQQADEVDDEQLVYLQNLILVSNEAVSDAFGVYEEDQDPVRLAESLKQLCGAQDGAVKPAA-VAAVSXXXXXXXNDVLKTE------------------------------ADHDAMQATILKVATNLTNESLLGPREASVLNTMISRENPVLVAAFKLFRENGKAAELYDTVARAARFETGR----VAGQSGSRGEQESGNAGQVAGSSQRLQVTRKASAAAAXXXXXXAA-------AGLDDTRGKG------GRAC---------------------------------------RVGAPTRDSGAT-------------------TADEDGVGEGADRAAAL------------MEFQRLVTLAVQKDMMDMCDAR-----------------------VSREEALCLATPSPGCTQAILKSLEEFEGSSNRDRLLNAFAGIAKAEMLKRNGKDRE---------------GEDXXXXXXXXXXXXXXXX-----------------NNSEQDGEER-----------------LDXXXXXXXXXEVSDDRAMVELMELADCMAGDKSIGAQEAALLAKLIENKYPPVIQAYEDYAASQDVGALVSALMAI-----VGTQ--------------------GGEQEVGGMEEPRAQXXXXXXXXXXXXXMHDTKVLTASDATRLLLLLAQEDPNSLAAFEAFDSSKDVSSLVEAIKTILQDAPPIAPAMLTMEAHPDGGRSNSSQLLTQILQPLPDANDDAATSEDSDGSARLDSGNNAANIEMGEDGGSDADAVVAENVVSIVDGMGLDESEAAALRLAIANGDVNMKGALELFRLDSDAQELEDTFARVARLVLEREHESRLTGQ----------VPDASRAMGENSCDSNNDVATAN-SGEETRNIDFTLDGKAGLFQELLQQLERVGVMSEAQAVVIMDRYRSKDAVVFAALDVYKNENDMSELVDTLKRLT 941
BLAST of mRNA_H-paniculata_contig281.7673.1 vs. uniprot
Match: A0A7S2XXN6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXN6_9STRA) HSP 1 Score: 73.6 bits (179), Expect = 9.050e-11 Identity = 63/198 (31.82%), Postives = 94/198 (47.47%), Query Frame = 1
Query: 3202 VAESVVSIVDGMGLSEGEAAALRLAIANNDANIRGAIELYRVDSDAQELQDTLARVARQVLQREVALRQEASDIDVAGA------------------GLSAPAASTAPXXXXXXXXXXXXNVRQSTAPTHVADLAHGHRAEVFQALVQQLTMMDVIDDEQGKAIVERYREKDAVVLAALDVYQHEKDLAELVDTLRRL 3741
V + +S+V MGL+E E AALRLA+A D +++ A+E++R++ D +LQDTL RVAR ++ EVA + + +G +A+ A S A A A R FQ L Q+L +I+ + + E + KD V AALDVY + D+ EL DTL+R+
Sbjct: 11 VDQKFLSLVRSMGLTEMEMAALRLALARGDPSVKAALEVFRLEQDGPDLQDTLRRVARLTIE-EVAGEALTNIVTTSGEEDQEXXXXXXXXXXXXXXXXHHVSAAVASRTSAKGQQEAGQAGNSSGADRGAA--AESQRKYFFQILCQELVNSKMINPAEEVLLKELFTLKDPSVWAALDVYDIDNDIEELYDTLQRI 205 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig281.7673.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig281.7673.1 >prot_H-paniculata_contig281.7673.1 ID=prot_H-paniculata_contig281.7673.1|Name=mRNA_H-paniculata_contig281.7673.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1153bp MVETKFIRIAHGEDAHFVALYKGIDPQEGSSLLRAAFRVPQHVVGFISEGback to top mRNA from alignment at H-paniculata_contig281:1985..40307+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig281.7673.1 ID=mRNA_H-paniculata_contig281.7673.1|Name=mRNA_H-paniculata_contig281.7673.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=38323bp|location=Sequence derived from alignment at H-paniculata_contig281:1985..40307+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig281:1985..40307+ >mRNA_H-paniculata_contig281.7673.1 ID=mRNA_H-paniculata_contig281.7673.1|Name=mRNA_H-paniculata_contig281.7673.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=6918bp|location=Sequence derived from alignment at H-paniculata_contig281:1985..40307+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |