mRNA_H-paniculata_contig28063.7667.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig28063.7667.1
Unique NamemRNA_H-paniculata_contig28063.7667.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig28063.7667.1 vs. uniprot
Match: D8LSH5_ECTSI (Ornithine aminotransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSH5_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 3.660e-17
Identity = 36/43 (83.72%), Postives = 40/43 (93.02%), Query Frame = 1 
Query:    1 QDKAHVVFANNNFWGRTLAAVSSSSDPDSYGGYGPYMPGFSRV 129
            ++KAHVVFA NNFWGRTLAAVSSS+DP+SY GYGPYMPGFS V
Sbjct:  168 ENKAHVVFAENNFWGRTLAAVSSSTDPESYNGYGPYMPGFSTV 210
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BLAST of mRNA_H-paniculata_contig28063.7667.1 vs. uniprot
Match: A0A7S2SQH9_9STRA (Ornithine aminotransferase (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQH9_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 3.270e-16
Identity = 34/42 (80.95%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:    4 DKAHVVFANNNFWGRTLAAVSSSSDPDSYGGYGPYMPGFSRV 129
            DKA V+FA NNFWGRTLAAVSSSSDP +Y G+GPYMPGFS V
Sbjct:   37 DKARVIFAGNNFWGRTLAAVSSSSDPTAYTGFGPYMPGFSCV 78
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BLAST of mRNA_H-paniculata_contig28063.7667.1 vs. uniprot
Match: H3GB14_PHYRM (Ornithine aminotransferase n=3 Tax=Phytophthora TaxID=4783 RepID=H3GB14_PHYRM)

HSP 1 Score: 78.2 bits (191), Expect = 8.520e-16
Identity = 33/43 (76.74%), Postives = 40/43 (93.02%), Query Frame = 1 
Query:    1 QDKAHVVFANNNFWGRTLAAVSSSSDPDSYGGYGPYMPGFSRV 129
            ++KA V+FA NNFWGRTL+AVSSS+DPD+YGGYGP+MPGFS V
Sbjct:  158 ENKAKVIFAQNNFWGRTLSAVSSSNDPDAYGGYGPFMPGFSSV 200
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BLAST of mRNA_H-paniculata_contig28063.7667.1 vs. uniprot
Match: A0A6G1SMI2_9ACAR (Ornithine aminotransferase, mitochondrial (Fragment) n=1 Tax=Aceria tosichella TaxID=561515 RepID=A0A6G1SMI2_9ACAR)

HSP 1 Score: 73.9 bits (180), Expect = 8.960e-16
Identity = 31/42 (73.81%), Postives = 38/42 (90.48%), Query Frame = 1 
Query:    4 DKAHVVFANNNFWGRTLAAVSSSSDPDSYGGYGPYMPGFSRV 129
            +KA +VFA  NFWGRTLAA+SSS+DP+SYGG+GP+MPGFS V
Sbjct:   51 NKAKIVFAEGNFWGRTLAAISSSTDPESYGGFGPFMPGFSTV 92
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BLAST of mRNA_H-paniculata_contig28063.7667.1 vs. uniprot
Match: A0A0C2M8D0_THEKT (Ornithine aminotransferase n=1 Tax=Thelohanellus kitauei TaxID=669202 RepID=A0A0C2M8D0_THEKT)

HSP 1 Score: 75.5 bits (184), Expect = 4.060e-15
Identity = 31/43 (72.09%), Postives = 39/43 (90.70%), Query Frame = 1 
Query:    1 QDKAHVVFANNNFWGRTLAAVSSSSDPDSYGGYGPYMPGFSRV 129
            +DKA +VFA NNFWGRTLAAVS+S+DP+SYGGYGP+MP F ++
Sbjct:   27 KDKAVIVFAENNFWGRTLAAVSASTDPESYGGYGPFMPNFEKI 69
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BLAST of mRNA_H-paniculata_contig28063.7667.1 vs. uniprot
Match: A0A812DVL1_SEPPH (Ornithine aminotransferase n=1 Tax=Sepia pharaonis TaxID=158019 RepID=A0A812DVL1_SEPPH)

HSP 1 Score: 75.5 bits (184), Expect = 8.140e-15
Identity = 33/42 (78.57%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:    4 DKAHVVFANNNFWGRTLAAVSSSSDPDSYGGYGPYMPGFSRV 129
            DKA ++FA+ NFWGRTLAAVSSS+DP SY GYGPYMPGFS V
Sbjct: 1465 DKAKIIFADGNFWGRTLAAVSSSTDPSSYAGYGPYMPGFSIV 1506
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BLAST of mRNA_H-paniculata_contig28063.7667.1 vs. uniprot
Match: UPI000C75EE7B (ornithine aminotransferase, mitochondrial-like isoform X1 n=2 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C75EE7B)

HSP 1 Score: 75.1 bits (183), Expect = 1.050e-14
Identity = 34/43 (79.07%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:    1 QDKAHVVFANNNFWGRTLAAVSSSSDPDSYGGYGPYMPGFSRV 129
            Q+KA VVFA NNFWGRTLAAVSSS+DP +YG YGP+MPGFS V
Sbjct:  155 QNKAKVVFAKNNFWGRTLAAVSSSTDPTAYGDYGPFMPGFSLV 197
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BLAST of mRNA_H-paniculata_contig28063.7667.1 vs. uniprot
Match: B4KZA9_DROMO (Ornithine aminotransferase n=7 Tax=Drosophila TaxID=7215 RepID=B4KZA9_DROMO)

HSP 1 Score: 75.1 bits (183), Expect = 1.050e-14
Identity = 30/43 (69.77%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:    1 QDKAHVVFANNNFWGRTLAAVSSSSDPDSYGGYGPYMPGFSRV 129
            ++KA ++FA NNFWGRTLAA+S+SSDP SYGG+GPYMPGF  +
Sbjct:  159 ENKAKIIFARNNFWGRTLAAISASSDPSSYGGFGPYMPGFELI 201
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BLAST of mRNA_H-paniculata_contig28063.7667.1 vs. uniprot
Match: A0A0P4VUE2_SCYOL (Ornithine aminotransferase n=3 Tax=Portunidae TaxID=6757 RepID=A0A0P4VUE2_SCYOL)

HSP 1 Score: 75.1 bits (183), Expect = 1.070e-14
Identity = 32/42 (76.19%), Postives = 39/42 (92.86%), Query Frame = 1 
Query:    4 DKAHVVFANNNFWGRTLAAVSSSSDPDSYGGYGPYMPGFSRV 129
            ++A +VFANNNFWGRTL+AVSSS+DP +YGG+GPYMPGFS V
Sbjct:  168 NQAKIVFANNNFWGRTLSAVSSSTDPTAYGGFGPYMPGFSLV 209
[Close]
BLAST of mRNA_H-paniculata_contig28063.7667.1 vs. uniprot
Match: A0A6B2G8G1_MYXSQ (Ornithine aminotransferase, mitochondrial (Trinotate prediction) (Fragment) n=1 Tax=Myxobolus squamalis TaxID=59785 RepID=A0A6B2G8G1_MYXSQ)

HSP 1 Score: 70.5 bits (171), Expect = 4.550e-14
Identity = 30/42 (71.43%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:    4 DKAHVVFANNNFWGRTLAAVSSSSDPDSYGGYGPYMPGFSRV 129
            ++A +VFANNNFWGR+LAAVSSS+DP+ Y GYGPYMPGF  +
Sbjct:   71 NQAIIVFANNNFWGRSLAAVSSSTDPECYEGYGPYMPGFEII 112
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig28063.7667.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSH5_ECTSI3.660e-1783.72Ornithine aminotransferase n=2 Tax=Ectocarpus TaxI... [more]
A0A7S2SQH9_9STRA3.270e-1680.95Ornithine aminotransferase (Fragment) n=1 Tax=Rhiz... [more]
H3GB14_PHYRM8.520e-1676.74Ornithine aminotransferase n=3 Tax=Phytophthora Ta... [more]
A0A6G1SMI2_9ACAR8.960e-1673.81Ornithine aminotransferase, mitochondrial (Fragmen... [more]
A0A0C2M8D0_THEKT4.060e-1572.09Ornithine aminotransferase n=1 Tax=Thelohanellus k... [more]
A0A812DVL1_SEPPH8.140e-1578.57Ornithine aminotransferase n=1 Tax=Sepia pharaonis... [more]
UPI000C75EE7B1.050e-1479.07ornithine aminotransferase, mitochondrial-like iso... [more]
B4KZA9_DROMO1.050e-1469.77Ornithine aminotransferase n=7 Tax=Drosophila TaxI... [more]
A0A0P4VUE2_SCYOL1.070e-1476.19Ornithine aminotransferase n=3 Tax=Portunidae TaxI... [more]
A0A6B2G8G1_MYXSQ4.550e-1471.43Ornithine aminotransferase, mitochondrial (Trinota... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig28063contigH-paniculata_contig28063:2811..2939 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.0
Seed ortholog evalue6.2e-13
Seed eggNOG ortholog164328.Phyra71772
Preferred nameOAT
KEGG rclassRC00006,RC00062
KEGG koko:K00819
KEGG ReactionR00667
KEGG Pathwayko00330,ko01100,ko01110,ko01130,map00330,map01100,map01110,map01130
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0001101,GO:0002376,GO:0003008,GO:0003674,GO:0003824,GO:0003992,GO:0004587,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0006082,GO:0006520,GO:0006525,GO:0006527,GO:0006536,GO:0006560,GO:0006561,GO:0006591,GO:0006593,GO:0006807,GO:0006950,GO:0006952,GO:0006955,GO:0006970,GO:0006972,GO:0006979,GO:0007600,GO:0007601,GO:0008144,GO:0008150,GO:0008152,GO:0008219,GO:0008270,GO:0008483,GO:0008652,GO:0009056,GO:0009058,GO:0009063,GO:0009064,GO:0009065,GO:0009084,GO:0009266,GO:0009408,GO:0009413,GO:0009414,GO:0009415,GO:0009605,GO:0009607,GO:0009617,GO:0009626,GO:0009628,GO:0009651,GO:0009719,GO:0009725,GO:0009733,GO:0009737,GO:0009741,GO:0009753,GO:0009814,GO:0009816,GO:0009987,GO:0010033,GO:0010035,GO:0010121,GO:0012501,GO:0014070,GO:0016043,GO:0016053,GO:0016054,GO:0016740,GO:0016769,GO:0018130,GO:0019493,GO:0019544,GO:0019752,GO:0019842,GO:0022607,GO:0030170,GO:0031974,GO:0031981,GO:0032501,GO:0033554,GO:0033993,GO:0034050,GO:0034214,GO:0036094,GO:0042221,GO:0042538,GO:0042742,GO:0042802,GO:0043167,GO:0043168,GO:0043169,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043648,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045087,GO:0046394,GO:0046395,GO:0046483,GO:0046872,GO:0046914,GO:0048037,GO:0050662,GO:0050877,GO:0050896,GO:0050953,GO:0051179,GO:0051259,GO:0051640,GO:0051641,GO:0051646,GO:0051704,GO:0051707,GO:0051716,GO:0065003,GO:0070013,GO:0070279,GO:0071704,GO:0071840,GO:0097159,GO:0097305,GO:0098542,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1901607,GO:1901700
EggNOG free text desc.Aminotransferase class-III
EggNOG OGs3QBQA@4776,COG4992@1,KOG1402@2759
Ec32 ortholog descriptionornithine aminotransferase
Ec32 orthologEc-21_003730.1
EC2.6.1.13
COG Functional cat.E
BiGG ReactioniMM904.YLR438W,iND750.YLR438W,iRC1080.CRv4_Au5_s11_g2570_t1
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01007
Exons1
Model size129
Cds size129
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929851.267831-CDS-H-paniculata_contig28063:2810..29391622929851.267831-CDS-H-paniculata_contig28063:2810..2939Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28063 2811..2939 -
1691481039.4040704-CDS-H-paniculata_contig28063:2810..29391691481039.4040704-CDS-H-paniculata_contig28063:2810..2939Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig28063 2811..2939 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig28063.7667.1prot_H-paniculata_contig28063.7667.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig28063 2811..2939 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig28063.7667.1

>prot_H-paniculata_contig28063.7667.1 ID=prot_H-paniculata_contig28063.7667.1|Name=mRNA_H-paniculata_contig28063.7667.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=43bp
QDKAHVVFANNNFWGRTLAAVSSSSDPDSYGGYGPYMPGFSRV
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mRNA from alignment at H-paniculata_contig28063:2811..2939-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig28063.7667.1 ID=mRNA_H-paniculata_contig28063.7667.1|Name=mRNA_H-paniculata_contig28063.7667.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=129bp|location=Sequence derived from alignment at H-paniculata_contig28063:2811..2939- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGACAAGGCCCACGTGGTGTTCGCCAACAACAACTTCTGGGGGCGGAC
TCTTGCGGCGGTGAGCTCCTCGAGCGACCCCGACAGCTACGGGGGATACG
GCCCTTACATGCCAGGCTTCTCCAGGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig28063:2811..2939-

>mRNA_H-paniculata_contig28063.7667.1 ID=mRNA_H-paniculata_contig28063.7667.1|Name=mRNA_H-paniculata_contig28063.7667.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=258bp|location=Sequence derived from alignment at H-paniculata_contig28063:2811..2939- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGACAAGGCCCACGTGGTGTTCGCCAACAACAACTTCTGGGGGCGGAC
TCTTGCGGCGGTGAGCTCCTCGAGCGACCCCGACAGCTACGGGGGATACG
GCCCTTACATGCCAGGCTTCTCCAGGGTGCAGGACAAGGCCCACGTGGTG
TTCGCCAACAACAACTTCTGGGGGCGGACTCTTGCGGCGGTGAGCTCCTC
GAGCGACCCCGACAGCTACGGGGGATACGGCCCTTACATGCCAGGCTTCT
CCAGGGTG
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