mRNA_H-paniculata_contig2801.7658.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2801.7658.1
Unique NamemRNA_H-paniculata_contig2801.7658.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2801.7658.1 vs. uniprot
Match: A0A6H5KV55_9PHAE (H/ACA ribonucleoprotein complex subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV55_9PHAE)

HSP 1 Score: 177 bits (449), Expect = 3.600e-54
Identity = 80/88 (90.91%), Postives = 87/88 (98.86%), Query Frame = 1 
Query:    1 ELGEFMHPCEDEMVYKLTNKMVPYFNAGAYLDNKTKIGKIDEILGPINGVMFTVKPDSGVNASSFQNGDKVFIGTQKLLPLSRFTGEG 264
            ELGEFMHPCEDEMVYKLTN MVPYFNAGAYLDNKTK+GK+DEILGP+NGVMFTVKPD+GVNASSF+NGDK+FIGTQKLLP+SRFTGEG
Sbjct:   38 ELGEFMHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKVGKVDEILGPVNGVMFTVKPDTGVNASSFKNGDKIFIGTQKLLPVSRFTGEG 125
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BLAST of mRNA_H-paniculata_contig2801.7658.1 vs. uniprot
Match: A0A7S3USE8_HETAK (H/ACA ribonucleoprotein complex subunit (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3USE8_HETAK)

HSP 1 Score: 155 bits (392), Expect = 2.850e-46
Identity = 71/91 (78.02%), Postives = 82/91 (90.11%), Query Frame = 1 
Query:    1 ELGEFMHPCEDEMVYKLTNKMVPYFNAGAYLDNKTKIGKIDEILGPINGVMFTVKPDSGVNASSFQNGDKVFIGTQKLLPLSRFTGEGGGG 273
            ELG+FMHPCE EMVYKLTN+MVPYFNAGAYL+NKTKIGK+DEI GP+N +MFTVKPD+GV A+SF+ GDKV+IGT KLLP+SRFTG G  G
Sbjct:   23 ELGDFMHPCEGEMVYKLTNEMVPYFNAGAYLENKTKIGKVDEIFGPVNEIMFTVKPDTGVIATSFKKGDKVWIGTDKLLPMSRFTGGGXXG 113
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BLAST of mRNA_H-paniculata_contig2801.7658.1 vs. uniprot
Match: A0A835YSJ1_9STRA (H/ACA ribonucleoprotein complex subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSJ1_9STRA)

HSP 1 Score: 150 bits (380), Expect = 3.130e-44
Identity = 70/86 (81.40%), Postives = 77/86 (89.53%), Query Frame = 1 
Query:    1 ELGEFMHPCEDEMVYKLTNKMVPYFNAGAYLDNKTKIGKIDEILGPINGVMFTVKPDSGVNASSFQNGDKVFIGTQKLLPLSRFTG 258
            ELG F+H CE EMVYKLTN MVPYFNAGAYL+NKTKIGK+DEILGPING  FTVKPD GVNA+SF++GDKVFIG  KLLP+SRFTG
Sbjct:   43 ELGIFVHACEGEMVYKLTNSMVPYFNAGAYLENKTKIGKVDEILGPINGSYFTVKPDGGVNATSFKDGDKVFIGPDKLLPMSRFTG 128
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BLAST of mRNA_H-paniculata_contig2801.7658.1 vs. uniprot
Match: A0A7S2UZ93_9STRA (H/ACA ribonucleoprotein complex subunit (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZ93_9STRA)

HSP 1 Score: 146 bits (368), Expect = 5.200e-42
Identity = 65/88 (73.86%), Postives = 78/88 (88.64%), Query Frame = 1 
Query:    1 ELGEFMHPCEDEMVYKLTNKMVPYFNAGAYLDNKTKIGKIDEILGPINGVMFTVKPDSGVNASSFQNGDKVFIGTQKLLPLSRFTGEG 264
            ELG FMHPCE EMVYKL + MVPYFNAGA+L +KTK+GK+DEI GPIN +MFTVKPD+GV+A+SF+  DKVF+ T+KLLP+SRFTGEG
Sbjct:   49 ELGSFMHPCEGEMVYKLVHTMVPYFNAGAFLQDKTKLGKVDEIFGPINNIMFTVKPDAGVSAASFKAEDKVFVSTEKLLPMSRFTGEG 136
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BLAST of mRNA_H-paniculata_contig2801.7658.1 vs. uniprot
Match: D8LD14_ECTSI (H/ACA ribonucleoprotein complex subunit (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD14_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 4.200e-41
Identity = 63/71 (88.73%), Postives = 69/71 (97.18%), Query Frame = 1 
Query:    1 ELGEFMHPCEDEMVYKLTNKMVPYFNAGAYLDNKTKIGKIDEILGPINGVMFTVKPDSGVNASSFQNGDKV 213
            ELGEFMHPCEDEMVYKLTN MVPYFNAGAYLDNKTK+GK+DEILGP+NGVMFTVKPD+GVNASSF+N DK+
Sbjct:   44 ELGEFMHPCEDEMVYKLTNSMVPYFNAGAYLDNKTKVGKVDEILGPVNGVMFTVKPDTGVNASSFKNNDKI 114
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BLAST of mRNA_H-paniculata_contig2801.7658.1 vs. uniprot
Match: A0A6A4XZY0_9STRA (H/ACA ribonucleoprotein complex subunit (Fragment) n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A6A4XZY0_9STRA)

HSP 1 Score: 141 bits (356), Expect = 3.530e-40
Identity = 70/94 (74.47%), Postives = 77/94 (81.91%), Query Frame = 1 
Query:    1 ELGEFMHPCEDEMVYKLTNKMVPYFNAGAYLDNKTKIGKIDEILGPINGVMFTVKPDSGVNASSFQNGDKVFIGTQKLLPLSRFTGEG---GGG 273
            ELG FMH CEDEMVYK T+  VPYFNAG YL+NKTKIGK+DEILG IN VMFTVKPDSGV A SF++GDKV+I   KLLPLSRFT +G   GGG
Sbjct:   50 ELGTFMHACEDEMVYKSTSDKVPYFNAGVYLENKTKIGKLDEILGAINDVMFTVKPDSGVAAKSFKSGDKVYISPDKLLPLSRFTDQGKSSGGG 143
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BLAST of mRNA_H-paniculata_contig2801.7658.1 vs. uniprot
Match: D0NS88_PHYIT (H/ACA ribonucleoprotein complex subunit n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NS88_PHYIT)

HSP 1 Score: 144 bits (364), Expect = 5.380e-40
Identity = 68/85 (80.00%), Postives = 75/85 (88.24%), Query Frame = 1 
Query:    1 ELGEFMHPCEDEMVYKLTNKMVPYFNAGAYLDNKTKIGKIDEILGPINGVMFTVKPDSGVNASSFQNGDKVFIGTQKLLPLSRFT 255
            ELG FMH CE+EMVYK TN  VPYFNAGA+L+NKT+IGK+DEILG IN VMFTVKPD+GV+ASSFQNGDKVFI   KLLPLSRFT
Sbjct:  118 ELGSFMHACENEMVYKSTNDKVPYFNAGAFLENKTRIGKVDEILGSINEVMFTVKPDTGVSASSFQNGDKVFISPDKLLPLSRFT 202
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BLAST of mRNA_H-paniculata_contig2801.7658.1 vs. uniprot
Match: A0A662WI78_9STRA (H/ACA ribonucleoprotein complex subunit n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WI78_9STRA)

HSP 1 Score: 142 bits (358), Expect = 8.930e-40
Identity = 67/85 (78.82%), Postives = 74/85 (87.06%), Query Frame = 1 
Query:    1 ELGEFMHPCEDEMVYKLTNKMVPYFNAGAYLDNKTKIGKIDEILGPINGVMFTVKPDSGVNASSFQNGDKVFIGTQKLLPLSRFT 255
            +LG FMH CEDEMVYK TN  VPYFNAGA+L+NKT+IGK+DEILG IN VMFTVKPDSGV+A+SFQ GDKVFI   KLLPLSRFT
Sbjct:   61 QLGSFMHSCEDEMVYKSTNDKVPYFNAGAFLENKTRIGKVDEILGSINEVMFTVKPDSGVSAASFQAGDKVFISPDKLLPLSRFT 145
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BLAST of mRNA_H-paniculata_contig2801.7658.1 vs. uniprot
Match: A0A484EGG2_BRELC (H/ACA ribonucleoprotein complex subunit n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EGG2_BRELC)

HSP 1 Score: 141 bits (356), Expect = 1.170e-39
Identity = 67/85 (78.82%), Postives = 74/85 (87.06%), Query Frame = 1 
Query:    1 ELGEFMHPCEDEMVYKLTNKMVPYFNAGAYLDNKTKIGKIDEILGPINGVMFTVKPDSGVNASSFQNGDKVFIGTQKLLPLSRFT 255
            ELG +MH CE+EMVYK TN  VPYFNAGA+L+NKT+IGK+DEILG IN VMFTVKPDSGV+ASSFQ GDKVFI   KLLPLSRFT
Sbjct:   44 ELGSYMHACENEMVYKSTNDKVPYFNAGAFLENKTRIGKVDEILGSINEVMFTVKPDSGVSASSFQAGDKVFISPDKLLPLSRFT 128
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BLAST of mRNA_H-paniculata_contig2801.7658.1 vs. uniprot
Match: G4ZSZ3_PHYSP (H/ACA ribonucleoprotein complex subunit n=5 Tax=Phytophthora TaxID=4783 RepID=G4ZSZ3_PHYSP)

HSP 1 Score: 141 bits (355), Expect = 1.480e-39
Identity = 66/85 (77.65%), Postives = 74/85 (87.06%), Query Frame = 1 
Query:    1 ELGEFMHPCEDEMVYKLTNKMVPYFNAGAYLDNKTKIGKIDEILGPINGVMFTVKPDSGVNASSFQNGDKVFIGTQKLLPLSRFT 255
            ELG FMH CE+EMVYK TN  VPYFNAGA+L+NKT+IGK+DEILG IN VMFTVKPD+GV+ASSFQ GDKVFI   KLLPL+RFT
Sbjct:   41 ELGSFMHACENEMVYKSTNDKVPYFNAGAFLENKTRIGKVDEILGSINEVMFTVKPDTGVSASSFQTGDKVFISPDKLLPLARFT 125
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2801.7658.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KV55_9PHAE3.600e-5490.91H/ACA ribonucleoprotein complex subunit n=1 Tax=Ec... [more]
A0A7S3USE8_HETAK2.850e-4678.02H/ACA ribonucleoprotein complex subunit (Fragment)... [more]
A0A835YSJ1_9STRA3.130e-4481.40H/ACA ribonucleoprotein complex subunit n=1 Tax=Tr... [more]
A0A7S2UZ93_9STRA5.200e-4273.86H/ACA ribonucleoprotein complex subunit (Fragment)... [more]
D8LD14_ECTSI4.200e-4188.73H/ACA ribonucleoprotein complex subunit (Fragment)... [more]
A0A6A4XZY0_9STRA3.530e-4074.47H/ACA ribonucleoprotein complex subunit (Fragment)... [more]
D0NS88_PHYIT5.380e-4080.00H/ACA ribonucleoprotein complex subunit n=1 Tax=Ph... [more]
A0A662WI78_9STRA8.930e-4078.82H/ACA ribonucleoprotein complex subunit n=2 Tax=No... [more]
A0A484EGG2_BRELC1.170e-3978.82H/ACA ribonucleoprotein complex subunit n=1 Tax=Br... [more]
G4ZSZ3_PHYSP1.480e-3977.65H/ACA ribonucleoprotein complex subunit n=5 Tax=Ph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2801contigH-paniculata_contig2801:4271..4726 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score136.7
Seed ortholog evalue8.5e-30
Seed eggNOG ortholog4787.PITG_15652T0
Preferred nameGAR1
KEGG rclassRC00002,RC00017,RC02795
KEGG koko:K02866,ko:K11128,ko:K17103
KEGG ReactionR01800
KEGG Pathwayko00260,ko00564,ko01100,ko01110,ko03008,ko03010,map00260,map00564,map01100,map01110,map03008,map03010
KEGG ModuleM00093,M00177,M00179,M00425
Hectar predicted targeting categoryother localisation
GOsGO:0000154,GO:0000454,GO:0000723,GO:0001522,GO:0001650,GO:0001651,GO:0002376,GO:0002520,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005697,GO:0005730,GO:0005732,GO:0005737,GO:0006139,GO:0006259,GO:0006278,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007004,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009451,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009987,GO:0010467,GO:0010833,GO:0015030,GO:0016020,GO:0016043,GO:0016070,GO:0016072,GO:0016073,GO:0016074,GO:0016604,GO:0018130,GO:0019438,GO:0022613,GO:0030097,GO:0030515,GO:0031118,GO:0031120,GO:0031429,GO:0031974,GO:0031976,GO:0031981,GO:0031984,GO:0032200,GO:0032501,GO:0032502,GO:0032991,GO:0034357,GO:0034470,GO:0034513,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0040031,GO:0042254,GO:0042592,GO:0042651,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0046483,GO:0048513,GO:0048534,GO:0048731,GO:0048856,GO:0051276,GO:0055035,GO:0060216,GO:0060249,GO:0065007,GO:0065008,GO:0070013,GO:0070034,GO:0071704,GO:0071840,GO:0071897,GO:0072588,GO:0072589,GO:0090304,GO:0090661,GO:0097159,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990904
EggNOG free text desc.Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1
EggNOG OGs3Q8G5@4776,COG3277@1,KOG3262@2759
Ec32 ortholog descriptionGar1 subunit of the H/ACA ribonucleoprotein complex
Ec32 orthologEc-01_001890.1
EC2.7.8.8
COG Functional cat.J
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03009,ko03011,ko03032
Exons1
Model size456
Cds size441
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929850.0750306-CDS-H-paniculata_contig2801:4270..47111622929850.0750306-CDS-H-paniculata_contig2801:4270..4711Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2801 4271..4711 -
1691481038.9365447-CDS-H-paniculata_contig2801:4270..47111691481038.9365447-CDS-H-paniculata_contig2801:4270..4711Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2801 4271..4711 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929850.1010895-UTR-H-paniculata_contig2801:4711..47261622929850.1010895-UTR-H-paniculata_contig2801:4711..4726Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2801 4712..4726 -
1691481038.950242-UTR-H-paniculata_contig2801:4711..47261691481038.950242-UTR-H-paniculata_contig2801:4711..4726Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2801 4712..4726 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2801.7658.1prot_H-paniculata_contig2801.7658.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2801 4271..4711 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2801.7658.1

>prot_H-paniculata_contig2801.7658.1 ID=prot_H-paniculata_contig2801.7658.1|Name=mRNA_H-paniculata_contig2801.7658.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=147bp
MHPCEDEMVYKLTNKMVPYFNAGAYLDNKTKIGKIDEILGPINGVMFTVK
PDSGVNASSFQNGDKVFIGTQKLLPLSRFTGEGGGGGRGGGGRGAARGRG
GGGMRGGRGGGRGGFSSPRGRGGGMRGGGGGGMRGGRGGSRGRGRV*
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mRNA from alignment at H-paniculata_contig2801:4271..4726-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2801.7658.1 ID=mRNA_H-paniculata_contig2801.7658.1|Name=mRNA_H-paniculata_contig2801.7658.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=456bp|location=Sequence derived from alignment at H-paniculata_contig2801:4271..4726- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGTTGGGTGAGTTTATGCACCCCTGCGAAGACGAGATGGTGTACAAGCT
CACCAACAAAATGGTCCCGTATTTCAACGCCGGCGCGTACCTCGACAACA
AGACCAAGATAGGCAAGATCGACGAGATCCTTGGTCCCATTAACGGCGTC
ATGTTCACGGTAAAACCCGACTCGGGCGTAAATGCCTCATCCTTTCAGAA
CGGGGACAAAGTCTTCATCGGCACCCAGAAGCTGTTGCCGTTATCGCGCT
TCACGGGCGAGGGCGGCGGGGGCGGCAGGGGTGGCGGGGGTAGGGGGGCT
GCACGCGGGCGCGGAGGGGGGGGTATGCGAGGGGGAAGGGGAGGGGGGAG
GGGGGGATTCTCGTCTCCCCGGGGGCGGGGGGGTGGCATGAGGGGGGGGG
GTGGCGGTGGTATGCGGGGAGGAAGAGGCGGTTCACGAGGTCGGGGGAGG
GTTTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig2801:4271..4726-

>mRNA_H-paniculata_contig2801.7658.1 ID=mRNA_H-paniculata_contig2801.7658.1|Name=mRNA_H-paniculata_contig2801.7658.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=882bp|location=Sequence derived from alignment at H-paniculata_contig2801:4271..4726- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCACCCCTGCGAAGACGAGATGGTGTACAAGCTCACCAACAAAATGGT
CCCGTATTTCAACGCCGGCGCGTACCTCGACAACAAGACCAAGATAGGCA
AGATCGACGAGATCCTTGGTCCCATTAACGGCGTCATGTTCACGGTAAAA
CCCGACTCGGGCGTAAATGCCTCATCCTTTCAGAACGGGGACAAAGTCTT
CATCGGCACCCAGAAGCTGTTGCCGTTATCGCGCTTCACGGGCGAGGGCG
GCGGGGGCGGCAGGGGTGGCGGGGGTAGGGGGGCTGCACGCGGGCGCGGA
GGGGGGGGTATGCGAGGGGGAAGGGGAGGGGGGAGGGGGGGATTCTCGTC
TCCCCGGGGGCGGGGGGGTGGCATGAGGGGGGGGGGTGGCGGTGGTATGC
GGGGAGGAAGAGGCGGTTCACGAGGTCGGGGGAGGGTTTAAATGCACCCC
TGCGAAGACGAGATGGTGTACAAGCTCACCAACAAAATGGTCCCGTATTT
CAACGCCGGCGCGTACCTCGACAACAAGACCAAGATAGGCAAGATCGACG
AGATCCTTGGTCCCATTAACGGCGTCATGTTCACGGTAAAACCCGACTCG
GGCGTAAATGCCTCATCCTTTCAGAACGGGGACAAAGTCTTCATCGGCAC
CCAGAAGCTGTTGCCGTTATCGCGCTTCACGGGCGAGGGCGGCGGGGGCG
GCAGGGGTGGCGGGGGTAGGGGGGCTGCACGCGGGCGCGGAGGGGGGGGT
ATGCGAGGGGGAAGGGGAGGGGGGAGGGGGGGATTCTCGTCTCCCCGGGG
GCGGGGGGGTGGCATGAGGGGGGGGGGTGGCGGTGGTATGCGGGGAGGAA
GAGGCGGTTCACGAGGTCGGGGGAGGGTTTAA
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