mRNA_H-paniculata_contig280.7656.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig280.7656.1 vs. uniprot
Match: D7FVB9_ECTSI (BTB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVB9_ECTSI) HSP 1 Score: 615 bits (1585), Expect = 3.080e-200 Identity = 402/839 (47.91%), Postives = 493/839 (58.76%), Query Frame = 1
Query: 1 RIVRLGGRRVDHAVGGAWHTVVRTDTGESYVMGCILPSDNNXXXXXNPDGAIHARGSLRRAAIATGPTSPLDPFALSFGGFRRLMLPRGAEACSKGHSLFYGQGLGPPPRALRKVHTSVGRLKEDISRMLRQQDPDVIFTCNPD----------------GQAAYGSYGGY--RNGSKY--------TVGAHLAVLRARCPSLYEHAAAAITKSSSQGETH-----QRDQNCDARPEAWRVPSPPGVPIAALRLVISYLYEEVRLFDRKKTEATSAPK---------CPTPAESRRQQQHRAWLQQRRHDRQDQ--EVNSAAIVGDQDGHQDISLNGAVKTDMSTLDGYEVDTHEEAWQERGEGDWEEAAGFGSFGGXXXXXXXXXXEVRYDGFALDRLMGVMAAARTLQLKRLQGSCEKRAEAFVDCRTVHKVLKRAAEGGFPYLKRRCLEFCFTHLIEVCAPENSGQVVSELSSHPQVLADVLSLSAASDAARMCAARGIPFEGPGNIPCIEALRDEAACVVPDDSYQKDFLALFEAAVQASSGQTSLQYTSTPAESFGDWGMTSKQREEGRSGAGAGGSPETSTSISTDV----IASGDGGTRKDTEV-ATTTNADNRNSEWVHPIEAQGDFTIRAGEGTEPVTVHKCILAARSGFFRALLEGNMVESAKSELVLKFKPVVRISALLQFLRFLYTGRTGV-MDPLTALDVLPLTRGEYGSGGYFQVSGNDELRACCTSTIVEGLNRDNALTIVVRAKALGDEDSLSSAIEFLLNNFHECMRPPPPLTPSGRSVEE----VDE------VPSCLEDDCSPAVDVLLAMAKRCTVVVK 2343
RIVRLGGRRV + VGGAWHT++ T TGE Y+MGCILPS N+ G A G T DPFALS G FRRL+LPRGAEACSKGHSL YGQGLG PP ALR+V S+GRLK D SRM+ +Q PDV+FT + G + S GG R G VGAHL+VL+ARCP LYEHAA +++S S+ T +R+ + D R AWRV +P GVP+ AL+LVI YLY++ +FD+ K E + ++ + + +RA DR+D+ + S A V D+D Q +G + M+ W E EG+ E AAGFGSFGG +YDG LDRL+ +MAAARTL+L RLQG CEKRAEAF+DCRTVHKVL+RAAEGGFPYLKRRCLEFC HL EV LADVLSLSAAS+ A+ AA FEG G IPCIEALR EAACVVP + YQ DFLALFE S + S P + + E+ + G P TS + D ASGDG V A P EA+GDF IRAGEG VTVHK ILAARSGFFRALLEG M ++ + EL LKF+PVV I ALL+F+RFLYTGR+G ++PL AL+VL LT+G+ GSGG+FQV+G DELR CT I +G++ DNAL+I+VRAKA GDE L +AI+++L +F CM P G E+ ++E +P+CLEDD SPAVD+LLA+AKRCTV +K
Sbjct: 307 RIVRLGGRRVKNCVGGAWHTIIGTVTGEQYIMGCILPSANSPPVAGGGAGG------------AAGATCSSDPFALSCGDFRRLLLPRGAEACSKGHSLLYGQGLGAPPSALREVSKSLGRLKCDFSRMVVRQKPDVLFTPHAHHDSDSLHDDDSRIRSVGADSLSSIGGAAGREGEGQGNCSSCDNPVGAHLSVLKARCPPLYEHAATVVSRSRSRRATDADQPGERETDSDGRMAAWRVCAPAGVPLDALQLVICYLYQDAGVFDKPKPETAETDRDYKYEDASFSGNTGDAAQSEPNRA------RDRRDRLFSIRSKAGVADEDDEQ--LKHGTAEMSMNP------------WDEGDEGEHETAAGFGSFGGAYGGNG------KYDGAGLDRLVRLMAAARTLKLTRLQGLCEKRAEAFIDCRTVHKVLRRAAEGGFPYLKRRCLEFCLVHLGEV-------------------LADVLSLSAASEGAKHAAASEESFEGDGAIPCIEALRGEAACVVPAEDYQGDFLALFEEIAAESVAAEGREEISPPRPTQAGHAAKAHSDEKKKRQPTPG--PVTSFAQGNDKGELPRASGDGKGEGSVLVPGEKRRAAGYKDVGKRPAEAEGDFKIRAGEGMPAVTVHKSILAARSGFFRALLEGRMADAGQDELTLKFEPVVTICALLEFIRFLYTGRSGNDIEPLIALEVLFLTKGDEGSGGFFQVAGTDELRRFCTLRIFDGMDSDNALSILVRAKAFGDERVLEAAIDYILGHFDSCMSSLKPPDGFGGEAEDGGGTLEEDPMTTLIPACLEDDESPAVDLLLALAKRCTVQIK 1086
BLAST of mRNA_H-paniculata_contig280.7656.1 vs. uniprot
Match: A0A6H5L8N9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8N9_9PHAE) HSP 1 Score: 293 bits (750), Expect = 5.750e-85 Identity = 192/412 (46.60%), Postives = 236/412 (57.28%), Query Frame = 1
Query: 385 MLRQQDPDVIFTCNPD----------------GQAAYGSYGGYRNGSK----------------YTVGAHLAVLRARCPSLYEHAAAAITKSSSQ---------GETHQRDQNCDARPEAWRVPSPPGVPIAALRLVISYLYEEVRLFDRKKTEATSAPK---------CPTPAESRRQQQHRAWLQQRRHDRQDQ--EVNSAAIVGDQDGHQDISLNGAVKTDMSTLDGYEVDTHEEAWQERGEGDWEEAAGFGSFGGXXXXXXXXXXEVRYDGFALDRLMGVMAAARTLQLKRLQGSCEKRAEAFVDCRTVHKVLKRAAEGGFPYLKRRCLEFCFTHLIEVCAPENSGQVVSELSSHPQVLADVLSLSAASDAARMCAARGIPFEGPGNIPCIEALRDEAACVVPDDSYQ 1464
ML +Q PDV+FT + G + S GG G + VGAHL+VL+ARCP LYEHAA I++ S+ E+ +R+ + D R WRV +P GVP+ AL+LVI YLY++ +FD+ K E + ++ + + +RA DR+D+ + S A V D+D Q +G + M+ W E EG+ E AAGFGSFGG +YDG LDRLM +MAAARTL+L RLQG CEKRAEAF+DCRTVHKVL+RAAEGGFPYLKRRCLEFC HL EVCAP NS +VV ELSSHPQVLADVLSLSAAS+ A+ AAR FEG G IPCIEALRDEAA VVP + YQ
Sbjct: 1 MLVRQKPDVLFTPHAHHDSDSPLDHDSRIRSVGAGSMPSIGGAAGGEXXXXXXXXXXXDLSSYDHPVGAHLSVLKARCPPLYEHAATVISRCRSRCRSRQAPDADESGERETDSDGRMAPWRVCAPAGVPLDALQLVICYLYQDAGVFDKPKLETAETDREYKYEDASFSGNTGDAAQSEPNRA------RDRRDRLFSIRSKAGVTDEDDEQ--LKHGTAEMSMNP------------WDEGDEGEHETAAGFGSFGGAYGGNG------KYDGAGLDRLMRLMAAARTLKLTRLQGLCEKRAEAFIDCRTVHKVLRRAAEGGFPYLKRRCLEFCLVHLGEVCAPPNSAEVVRELSSHPQVLADVLSLSAASEGAKHAAAREESFEGDGAIPCIEALRDEAASVVPAEDYQ 386
BLAST of mRNA_H-paniculata_contig280.7656.1 vs. uniprot
Match: A0A7S2V3W1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V3W1_9STRA) HSP 1 Score: 95.5 bits (236), Expect = 3.980e-19 Identity = 49/113 (43.36%), Postives = 65/113 (57.52%), Query Frame = 1
Query: 1867 ESAKSELVLKFKPVVRISALLQFLRFLYTGRTGVMDPLTALDVLPLTRGEYGSGGYFQVSGNDELRACCTSTIVEGLNRDNALTIVVRAKALGDEDSLSSAIEFLLNNFHECM 2205
ES +L +P + A L FLRFLYTG M+P ALD+L LT GE GSGGYFQ+ ND LR C + + + N ++ RA +GDE + + AI F+L NF E +
Sbjct: 1 ESTDGRFILTLEPPPTVRAFLAFLRFLYTGLVDAMEPADALDILSLTDGEEGSGGYFQIRSNDYLRGFCHQCLHQQVTTRNVWPLLSRAAEVGDEMNKAMAIAFILENFSEAV 113 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig280.7656.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig280.7656.1 >prot_H-paniculata_contig280.7656.1 ID=prot_H-paniculata_contig280.7656.1|Name=mRNA_H-paniculata_contig280.7656.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=763bp MGCILPSDNNNHNNNNPDGAIHARGSLRRAAIATGPTSPLDPFALSFGGFback to top mRNA from alignment at H-paniculata_contig280:31127..42672- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig280.7656.1 ID=mRNA_H-paniculata_contig280.7656.1|Name=mRNA_H-paniculata_contig280.7656.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=11546bp|location=Sequence derived from alignment at H-paniculata_contig280:31127..42672- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig280:31127..42672- >mRNA_H-paniculata_contig280.7656.1 ID=mRNA_H-paniculata_contig280.7656.1|Name=mRNA_H-paniculata_contig280.7656.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4578bp|location=Sequence derived from alignment at H-paniculata_contig280:31127..42672- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |