mRNA_H-paniculata_contig27996.7649.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig27996.7649.1
Unique NamemRNA_H-paniculata_contig27996.7649.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig27996.7649.1 vs. uniprot
Match: A0A7S3NLA4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NLA4_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 3.740e-11
Identity = 27/43 (62.79%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:   16 GKLDEAEPLYRKAVEIGDEVLGPQHPDLATWLNNLATLVRDRG 144
            GK DEA+PL ++A+EIG+E LGP HPDL +WLNNLA L+ ++G
Sbjct:    1 GKYDEAKPLVQRAIEIGEESLGPNHPDLVSWLNNLAVLLINQG 43
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BLAST of mRNA_H-paniculata_contig27996.7649.1 vs. uniprot
Match: D8LLM3_ECTSI (Kinesin light chain-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLM3_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 2.810e-10
Identity = 26/43 (60.47%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:   16 GKLDEAEPLYRKAVEIGDEVLGPQHPDLATWLNNLATLVRDRG 144
            G+  EA+PLY +A+E+G++ LGP HPDLATWLNN A L+R +G
Sbjct:    8 GEDTEADPLYLRAIEVGEKKLGPDHPDLATWLNNQAVLLRKQG 50
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BLAST of mRNA_H-paniculata_contig27996.7649.1 vs. uniprot
Match: A0A6H5L045_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L045_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 6.180e-8
Identity = 24/42 (57.14%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:   10 ISGKLDEAEPLYRKAVEIGDEVLGPQHPDLATWLNNLATLVR 135
            + GK  EA+PLY +A++IG ++LGP HPDLA WLNN A L++
Sbjct:    8 LGGKYAEADPLYLRAIDIGKKMLGPDHPDLAAWLNNRAGLLK 49
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BLAST of mRNA_H-paniculata_contig27996.7649.1 vs. uniprot
Match: A0A6H5JJK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK0_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 1.960e-7
Identity = 24/42 (57.14%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:   10 ISGKLDEAEPLYRKAVEIGDEVLGPQHPDLATWLNNLATLVR 135
            + G   EA+P   +A+EIG++VLGP+HPDLA WLNN A L+R
Sbjct:  642 LEGNFAEADPFNLRAIEIGEKVLGPEHPDLAVWLNNRAELLR 683
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BLAST of mRNA_H-paniculata_contig27996.7649.1 vs. uniprot
Match: A0A6H5K0C4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0C4_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 2.040e-7
Identity = 24/39 (61.54%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:    7 LISGKLDEAEPLYRKAVEIGDEVLGPQHPDLATWLNNLA 123
            +  GK +EA+PLY +AVEIG++ LGP HP LA WLNN A
Sbjct:    5 VFQGKYEEADPLYLRAVEIGEKTLGPDHPTLAVWLNNKA 43
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BLAST of mRNA_H-paniculata_contig27996.7649.1 vs. uniprot
Match: UPI0013D29528 (tetratricopeptide repeat protein n=1 Tax=Desulfobacter hydrogenophilus TaxID=2291 RepID=UPI0013D29528)

HSP 1 Score: 54.3 bits (129), Expect = 3.330e-7
Identity = 24/38 (63.16%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:   16 GKLDEAEPLYRKAVEIGDEVLGPQHPDLATWLNNLATL 129
            GK +EAEPLY++A++I + VLGP HP +AT LNNLA L
Sbjct:    5 GKYEEAEPLYQRALKIRETVLGPDHPSVATTLNNLAGL 42
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BLAST of mRNA_H-paniculata_contig27996.7649.1 vs. uniprot
Match: A0A6H5K4D0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4D0_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 3.690e-7
Identity = 24/40 (60.00%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:   16 GKLDEAEPLYRKAVEIGDEVLGPQHPDLATWLNNLATLVR 135
            GK D+AEPLY +A+ IG++ LGP+HPDLA WLN  A L++
Sbjct:   13 GKYDDAEPLYVRAIAIGEKSLGPEHPDLAVWLNYWAGLLK 52
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BLAST of mRNA_H-paniculata_contig27996.7649.1 vs. uniprot
Match: UPI000AC66F0C (tetratricopeptide repeat-containing protein n=1 Tax=Geitlerinema sp. PCC 9228 TaxID=111611 RepID=UPI000AC66F0C)

HSP 1 Score: 57.0 bits (136), Expect = 5.880e-7
Identity = 26/42 (61.90%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:   19 KLDEAEPLYRKAVEIGDEVLGPQHPDLATWLNNLATLVRDRG 144
            + DEAEPLYR+A+E+   +LG QHPD+AT LNNLA L R +G
Sbjct:    1 RYDEAEPLYRQALEMRKRLLGEQHPDVATSLNNLAGLYRSQG 42
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BLAST of mRNA_H-paniculata_contig27996.7649.1 vs. uniprot
Match: UPI000AF9E6D4 (tetratricopeptide repeat-containing protein n=5 Tax=Acidithiobacillus thiooxidans TaxID=930 RepID=UPI000AF9E6D4)

HSP 1 Score: 56.6 bits (135), Expect = 8.980e-7
Identity = 25/40 (62.50%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:    1 LVLISGKLDEAEPLYRKAVEIGDEVLGPQHPDLATWLNNL 120
            L+   GKL EAEPLY++A++I ++VLGP+HPD AT LNNL
Sbjct:   39 LIQARGKLAEAEPLYQRALKIKEKVLGPEHPDTATGLNNL 78
[Close]
BLAST of mRNA_H-paniculata_contig27996.7649.1 vs. uniprot
Match: A0A7S3NLU4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NLU4_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 1.500e-6
Identity = 21/32 (65.62%), Postives = 28/32 (87.50%), Query Frame = 1 
Query:   16 GKLDEAEPLYRKAVEIGDEVLGPQHPDLATWL 111
            GK +EA+PLY +A+EIG++ LGP HP+LATWL
Sbjct:   13 GKYNEAKPLYERAIEIGEKTLGPNHPNLATWL 44
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27996.7649.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3NLA4_9STRA3.740e-1162.79Hypothetical protein (Fragment) n=1 Tax=Aureoumbra... [more]
D8LLM3_ECTSI2.810e-1060.47Kinesin light chain-like protein n=1 Tax=Ectocarpu... [more]
A0A6H5L045_9PHAE6.180e-857.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJK0_9PHAE1.960e-757.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0C4_9PHAE2.040e-761.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI0013D295283.330e-763.16tetratricopeptide repeat protein n=1 Tax=Desulfoba... [more]
A0A6H5K4D0_9PHAE3.690e-760.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI000AC66F0C5.880e-761.90tetratricopeptide repeat-containing protein n=1 Ta... [more]
UPI000AF9E6D48.980e-762.50tetratricopeptide repeat-containing protein n=5 Ta... [more]
A0A7S3NLU4_9STRA1.500e-665.63Hypothetical protein (Fragment) n=1 Tax=Aureoumbra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig27996contigH-paniculata_contig27996:758..2850 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.4
Seed ortholog evalue1.9e-07
Seed eggNOG ortholog2880.D8LLM3
KEGG koko:K10407
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryother localisation
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko04812
Exons2
Model size408
Cds size408
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929847.3867917-CDS-H-paniculata_contig27996:757..8971622929847.3867917-CDS-H-paniculata_contig27996:757..897Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27996 758..897 -
1691481037.4657905-CDS-H-paniculata_contig27996:757..8971691481037.4657905-CDS-H-paniculata_contig27996:757..897Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27996 758..897 -
1622929847.404179-CDS-H-paniculata_contig27996:2582..28501622929847.404179-CDS-H-paniculata_contig27996:2582..2850Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27996 2583..2850 -
1691481037.4759965-CDS-H-paniculata_contig27996:2582..28501691481037.4759965-CDS-H-paniculata_contig27996:2582..2850Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27996 2583..2850 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig27996.7649.1prot_H-paniculata_contig27996.7649.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig27996 758..2850 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig27996.7649.1

>prot_H-paniculata_contig27996.7649.1 ID=prot_H-paniculata_contig27996.7649.1|Name=mRNA_H-paniculata_contig27996.7649.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=136bp
LVLISGKLDEAEPLYRKAVEIGDEVLGPQHPDLATWLNNLATLVRDRGDP
EGAEPLQRRAVSIGESVLGPSHPDLGAQVINLASLLNAKGNLEEAEALFR
RGIATLEAAHGRDHPDVAAVLSHFAALLQEQVTCF*
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mRNA from alignment at H-paniculata_contig27996:758..2850-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig27996.7649.1 ID=mRNA_H-paniculata_contig27996.7649.1|Name=mRNA_H-paniculata_contig27996.7649.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2093bp|location=Sequence derived from alignment at H-paniculata_contig27996:758..2850- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTGTTCTCATATCAGGCAAGCTAGATGAGGCGGAGCCCCTGTACCGCAA
GGCCGTGGAAATTGGCGACGAGGTGCTGGGGCCTCAACACCCAGACCTAG
CAACCTGGCTGAACAACCTCGCGACACTCGTGAGGGACAGGGGGGATCCT
GAGGGCGCGGAGCCTTTGCAAAGGCGGGCAGTGTCTATCGGAGAGAGTGT
GCTGGGCCCGTCGCATCCTGATCTGGGTGCGCAGGTTATTAACCTGGCTT
CGCTTCTGAATGCAAAAGGTGAATAGCGGATACTTTGGCGGGGTAAAAAT
TTAATGGCGGATGGCAATGTAGTAGAATTGGCATACGTACGAAAGCTGGA
CGTGGCTTTCCCGGTGTAAGTAACAGGAAACGCCCGGCCCTGATCCCTTG
GGAATAATAATAAAAAAGAAAGAGGTGAGAAAAGCACCGTATTTGAATAC
CATTTGTTATCGCAGCGAGGTGCTGCGACTTGTTTTTCCTTTGAATATGC
GATCGGTTCATGTCGAGAACGGAGATGTCATTGCGCGGTAGGGTGTCACC
ACCAAAAATCGACGGATCTCTTGCAAGATGAATACATATATATATATATT
TTTTTTTCTTCGTAGCGATAATGCCTTTATTTCGTTGTCGTCGATTGAGT
GCCGCACGATATTTTCGTACTCGTCGAGATATAGAGATAAAATCTCATGT
GAAGAATAATGGATCCTCGATGCGAGAATTAGCGTCGTTATCCCGGGGGG
TAATGATTTTCCGGTCTGTTCTATTAAAGGAAATGTAGACATGTTTGGGC
GAATGCCTGGATGTGGAAGCAGCGGAAAAGGTTTTTACCTCAGCCTTCCG
GGGGTTAAAAAAATAAAAATAAAAATAAAAATAAAAATGATTTTCCGGGT
AGTCAAGAAGATTCTGAAGGACGAATCGTAGTGTGCGTGGGAGGTCATGA
ATTGTAAATAAATAAGCAGGAGAGCTTGTAAGTTAGTGCTTCCTCTGTGC
CATCAATGAAAACGGTCAGTTACGATTATAGAAGCCATCTTGAACAGTTT
CGATTTTACTGTCGATTTAAAAGAAAAACTTATTGTACAAGTCCATATGC
TTTTGGGGGCTGAACTCCATAATTTCGCGGGTATTGGCGAAGTACCCCGG
GCGCGTGCGTGGCGCACGTAAGAACAACTCAGCAAAAAAAGTGTCCGCAT
TCTGCACCTCTTGCTATATTATTCCGATGGCAAAATGTGAAAATCGGCAA
AATAACGCAAGAAAAAGGACAATATTACCCCAAGTCTTGAGCTTCCATTC
ATACGGATACGCGAATCGGAATACACTTCAGAATGGCGCTCATGAATTTA
TCAGATTTTAGCCTTCCGTCGATGTCAACGATAGTTGTTGAGTCTTGGCA
GAGGGTCAGATACGATCCGCCAAATATTTGGCCCAGAGGAAGTACTATGC
ATTGCTCCCGATGTCTCAATTTACCTGTGAATTTTTATGGCGAATAGCCT
CTTATTTTGGTTGCAAGTTTGCTCATGTTGTATGTAGGCGTATGTGTTGG
CTACGCGGGCGTGTTTTATCTCCGTGTTCGAGTCTTGATTGCTAAGTCTC
ATCACAATTTTTACGCACGTCACGAAGGCGAGGGATATTTTTTTTCATGC
TCCCTAGTATAGATGCAGTATCATAGTACGAGGTAGTCACGACCCGCGTG
CTATTTCCGTTGCGTCCGTTCCAGGCGGTGCTATCATGTTGGTCCTGGTA
CCTGGTCATGAGCAGGGCGTATCATAAAAACCGCCGCCTTTGTTGTGAAG
ACCCACTTTAGATTTGAACGTGACTGATGAGAACATCTAGCCCGTAAACA
TGGGCTAAGTTCGCTTATCTCCCCCCCCCGCCCCCGCGCGCTTTTTTCCG
TGTTGATTTCGTTGGCTCCTTGGCCGGATTTCTGTGTAATGTTGAAATTG
CAGGGAACTTGGAAGAAGCGGAGGCGTTATTTCGAAGAGGGATAGCTACC
TTGGAAGCCGCGCACGGACGGGATCACCCGGATGTTGCGGCGGTTCTCAG
TCATTTCGCCGCACTTTTGCAAGAGCAGGTGACTTGTTTTTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig27996:758..2850-

>mRNA_H-paniculata_contig27996.7649.1 ID=mRNA_H-paniculata_contig27996.7649.1|Name=mRNA_H-paniculata_contig27996.7649.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=816bp|location=Sequence derived from alignment at H-paniculata_contig27996:758..2850- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTGTTCTCATATCAGGCAAGCTAGATGAGGCGGAGCCCCTGTACCGCAA
GGCCGTGGAAATTGGCGACGAGGTGCTGGGGCCTCAACACCCAGACCTAG
CAACCTGGCTGAACAACCTCGCGACACTCGTGAGGGACAGGGGGGATCCT
GAGGGCGCGGAGCCTTTGCAAAGGCGGGCAGTGTCTATCGGAGAGAGTGT
GCTGGGCCCGTCGCATCCTGATCTGGGTGCGCAGGTTATTAACCTGGCTT
CGCTTCTGAATGCAAAAGCTTGTTCTCATATCAGGCAAGCTAGATGAGGC
GGAGCCCCTGTACCGCAAGGCCGTGGAAATTGGCGACGAGGTGCTGGGGC
CTCAACACCCAGACCTAGCAACCTGGCTGAACAACCTCGCGACACTCGTG
AGGGACAGGGGGGATCCTGAGGGCGCGGAGCCTTTGCAAAGGCGGGCAGT
GTCTATCGGAGAGAGTGTGCTGGGCCCGTCGCATCCTGATCTGGGTGCGC
AGGTTATTAACCTGGCTTCGCTTCTGAATGCAAAAGGGAACTTGGAAGAA
GCGGAGGCGTTATTTCGAAGAGGGATAGCTACCTTGGAAGCCGCGCACGG
ACGGGATCACCCGGATGTTGCGGCGGTTCTCAGTCATTTCGCCGCACTTT
TGCAAGAGCAGGTGACTTGTTTTTGAGGAACTTGGAAGAAGCGGAGGCGT
TATTTCGAAGAGGGATAGCTACCTTGGAAGCCGCGCACGGACGGGATCAC
CCGGATGTTGCGGCGGTTCTCAGTCATTTCGCCGCACTTTTGCAAGAGCA
GGTGACTTGTTTTTGA
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