mRNA_H-paniculata_contig2799.7647.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2799.7647.1
Unique NamemRNA_H-paniculata_contig2799.7647.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2799.7647.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2799contigH-paniculata_contig2799:964..6077 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size688
Cds size687
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2799.7647.1prot_H-paniculata_contig2799.7647.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2799 964..6077 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929847.2401435-CDS-H-paniculata_contig2799:963..14841622929847.2401435-CDS-H-paniculata_contig2799:963..1484Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2799 964..1484 -
1691481037.4097908-CDS-H-paniculata_contig2799:963..14841691481037.4097908-CDS-H-paniculata_contig2799:963..1484Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2799 964..1484 -
1622929847.2561004-CDS-H-paniculata_contig2799:5081..51841622929847.2561004-CDS-H-paniculata_contig2799:5081..5184Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2799 5082..5184 -
1691481037.4189208-CDS-H-paniculata_contig2799:5081..51841691481037.4189208-CDS-H-paniculata_contig2799:5081..5184Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2799 5082..5184 -
1622929847.2689898-CDS-H-paniculata_contig2799:6014..60771622929847.2689898-CDS-H-paniculata_contig2799:6014..6077Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2799 6015..6077 -
1691481037.4271767-CDS-H-paniculata_contig2799:6014..60771691481037.4271767-CDS-H-paniculata_contig2799:6014..6077Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2799 6015..6077 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2799.7647.1

>prot_H-paniculata_contig2799.7647.1 ID=prot_H-paniculata_contig2799.7647.1|Name=mRNA_H-paniculata_contig2799.7647.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=229bp
TNSEVHTDRADHVLGTGPSYPARAIWRAMLGVGSAMTLNYADHQAFGGLN
QLGLDDLDDVNVHHTGGINNHVGSGRTIGGVTVGVGGESLGITNSDNGRN
HGPDNNGVLLQVGSSMLHNGAGVGTHTSPAGGQQQQLSPAPPPPSSWAAK
VRAGLGSENSPTLGAGGGGTVAAGLGSIGDMASSSEEIDSNTATRSLSFG
QLSGAMGPGPGPVHGLSMEAGGMPSMGAG
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mRNA from alignment at H-paniculata_contig2799:964..6077-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2799.7647.1 ID=mRNA_H-paniculata_contig2799.7647.1|Name=mRNA_H-paniculata_contig2799.7647.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5114bp|location=Sequence derived from alignment at H-paniculata_contig2799:964..6077- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAAACAGCGAAGTGCACACGGATCGCGCCGATCACGTCCTTGGTACAGG
ACCGTCCTACCCGGTGAGATCATCCACACTAGCATAACGTCCTCTCTCCC
TTTGGTGCCCTCGCACTCTATGTGTGCATGCCTAGCTGCGAAGTGATAAT
TTGATCGGTCCGGGAACTCCCAAGGAAGAAAATTTCACAAAAATAATTTC
GTTTTTCAATTCATGAAGCTGCAGTGAGTGCCACCTCGAGCACAGGAGGC
AGAAACGCCAAGCATCGGGGAAATGACCTCGGTGATGTTGACACTTTTCA
CACCCTTTCCCCCTCCCCCCCCACCCCCCCCCAATCCCCAAGTTCATACA
GCGCTGACTCTGGAACAGCAGCCCATCGATAGTTTTCGCTGCACTTGAAA
ATAGCATCCTTTCTTTGACCTCCTTCGTCTTGCTTATTTACTCTGTTCTC
GAACCCTGTATTCAAACCACTGTACTCTGTTGTACCCGTTTCATCGCACA
TTTTCGTTTATTCTGGTCGAACTTTGTGCCTGCATCGGGTAGGGCACCCA
CCGTGAAGAAGCGCCCCTCATCCGTTGTCCCCTCATTGGGCCCTCTGTGG
TATCGCACGCTTGTGTTTTAGTTTCATGTGCGTGTTGCTTGGACTCACGA
CCGAAATCTGACACACGATTGGAGCTATGGCTTTATTATTGCGTTTGTGA
TGTCTTTGCCGGTTTTTCTAACTTGACATCGAAAACCATAAAGCATCCAT
TTTCCAGGCGGCGGTGCGTCTTTTTTACTACCTTGTTCCCGAATTCGATG
CAATAAATGCTTTCAACTCACCGTCTCTGTACTAACCGCCTTGCCTTTAC
TGTTACTACACTTGTCATACGATTGGCGCTATGCCCTCCGTAGGCACGCG
CTATCTGGCGGGCGATGCTGGGCGTGGGATCGGCAATGACGCTCAACTAT
GCTGATCACCAAGCCTTCGGGGGATTGAACCAACTAGGTTTGGATGGTAA
GTGGCACGGTGCAAACTACAAATTGCACATGCCTGCTTTGTCCTTGGAGT
ATATTTGCACCAATTTGCGTAACAATTTGGCAACGGTGCTATCAGTACAT
ACGTATCGTAACGTATCATGGATCGAGTTGGGCTCACGCTGTAGCCCTTC
GTGAGCTCTTCAGTCCCACCGCTTCTCTTTTCCGGAATGGTCAAAGAACT
GCAGCATGGCAAGCTAACTGTGAGTGTGCGATGGTCCGTCCCCGTTCTTC
TGTTATTTTTCATATTTTCCATCCTGTGTGCCGGTGCTGCTCTTGCGAGC
AATCTAGCGGGTACCCCATTTCCTAACGTTGGTGGACCTCATAGCGACTA
CAAGACAAAAGATAGATCAACGTTGCGAAGTAACAGAAAACACTCCGCAC
ACAAAAAGAGCCTGCTGGACGGGCAGGGTAAAGTCAGTTACAACTCTCTA
AATTGTGTCGCGTTGAAGTTTGCAAGTTTTGTAAAGGAATCTCTGCGGAG
AGCATGTTTGTGCTTGTGTGCAACGAATAACTATACTGTCTTATTTATAA
CTATACGTCTGTTCCTCCCGTGCTGGCGCTGGAAATTGTTTGCTATCATA
CATCAGCTGTTTCGTATGCAAAATATCTGTGTGTGATTAGCACAGCGTTC
ACCTGGCACGGACGTATGCTGCCCGTTACTTTGTTCACGGGCAGTCGCAT
TCACCATACTGGTATCTTGCAACTGGTGCAGACGTGATTGTTGAATAAAT
CCAGATGTGGGGGTGATGCCTATGTAATGCACACATTTTGGAAATTTTTA
TGTCTTGTACTTGCGTGCAGTGTGCCCTGCTAAATTGAGTTGCCACACAA
ATATTGGCCAGTACCTAGACTTTCACAATAAATACATATGCCGAGGTTAT
TCTTTTCTGAGCAGTGGAACCATCGTAGAGGCAAATAATGTACCTGGTAA
ATCATTTCACAGCAGTTGAGGGCCCAACTAACTGTTTCAAGGTCACCAAG
CGCGAATCTTTGGAAGCCTGTGCGGCAGGTCTTCGGAGGAAAAATGCTCT
TAATCCCAAAACATCCGCCCGTATCAGGGCTGAATCGCAGGCAGATGCTT
TTCAAGGGAAAGGATCCACAACAGCTCGTCAGTCGCTATTTGGGGATAGA
CTCGAGCAGTGTTTACCAAGTGGTCGACAAAAACGATCGACAAAGTCAAA
ATGTTAACCTATGCAAAAGTTACCATCACTTCATCGTGTTGACGCGTCAA
CACCATGCGTTTCTTGCTCAAATCGGCAGCGATCGGTGCCAATTTGAGCC
CTTCCAACCCAGACTGCTTATAGGGTGGGGCTTGTGCTTAAGGTTAGCGT
TTCTTCCGCCATTAGGTTTGCTCGCGTTGGAGCACAACGAAGTATGAATC
ATGAAATAAGATAACTACTATCAACTATGCTTTTGGAGCACTTGGTACGC
AGGCAGGCCTTCTCGAGTAATGGTCAACAAGAAAACCTTCAAAAGTGGAA
CTGACTACATGGAAGGAAGGCAACACGCATTCCAGAGCCACCTGTTCTTT
CGCCGATATTGTTTGGTTGACATGCGATCATACTGTCTGTATTGGCGGAA
AACTAAAGTCGATTGGAGACCCAGCTCTTGAATCACAACTGATGCGTTCT
ATGTAGCGCCCTTATCCATGGTAGGGCGGATTTCCAATTCAACCTTCGTC
GAACACTACAGCTAGGCATCGACTGCCGAATGTGTTTTTGTTCGCCTCAG
GGTCCGGGTCAGGGTCAGGGCCACGAAAATCCTGTTTAAAATATCCCCGA
AACACCTGAGGATGAAAAATGCGTAGCATCGTCCTACTCCACATATTCCG
GACAACACGTTCGTGTTTGGTGCTTCACCAAGTGCAAACTATTGGCTAGA
TATAGTGAGTGCTCGAGTAAAGAAGTGCACCTTGCTTGCCTTAACTTGTG
AATATATTGGTTTCAGAAAAGTGCTGGTTTTGTACGACGTTGGTGGCATT
TTACACAGGTGCATCTACATGTTTGCACGCTTCCCACCCAAGCAAAGTTA
TATGCAACTGATCAAGAGCTTAGCAGCGGGCTATTTTGCCGCTACGCAGG
ATGAATCGTTTCTTGAGCGCACGGAAACTAAAGTTCCTACCATTCTGGCA
AAAAACGGCTGTGTATTTTCTTGTAATGGAGACAATCTGTCAAGAATAAC
GTGCAATCTCCCATACCACCATGCTCCACGATTCACGATTTGGCCTCTAA
CCTGCGTGTACTACCTTCGTCCTAAGCAAGGCTAGTGCGGACGATCATGA
GTGCTGTCGTGCGTCTTCTTGGGGTCTTTTGGGCTCTCGTGAGCGCCTAA
AAACCTCAAAGGTCTTATCGCACCAAAAATCAAGCCTGGGCTCATTTTAG
AGTTCAGGACCCTTTCTCGTTCTTGAGGCCAAACCCGTTATCGCTCCGAC
CTTGGATCCTGATTCGGGGCAGAGAATTGGTGGAAACATCACCCTTCGCG
TCTAAATCCTGGACTGCCTCCCCTATTTTTTGCCGAAACTGTATTACAAA
GTACGGATATCACTGCTGGCAGAGAATTAAATTTAAAAGAGTCACGGCGA
GATTAGGCGGGTTGACCAAGCAAAGGAAAAAAATCGCTGCGCGAAATAAG
GAATGTAACGCTGAACTGCTTAAAGGTTGCCCCAGCGATATTTCTGGCTT
TATGGGCGATGGACACAAACGCGAGTCCGTTCATGTTGCTGAAAACGTTT
GCTCGTATCCTTGCCGAAATACTTTTCTGTGGAGGCACGCAAATGTTCCC
CTGCCTCAGCCACGATAGTCTTACCCCTCCCCCCTCGATTCTCCTCGTTC
ATTCTTGTGTGCAGGGTTGATGTAGTTGATTCTGCTTGTTGCTCTGTGTT
GACGTGTGTGCCATGTTTCGACTTGTGCTCATCTTGAAATGTATCTGTCT
GGGCCCACAGCAATCCAATACAGAAGAGCCCAAAGAATCCGACTAGTCCA
TCATGTTCCTCGTCTTGAAAACGTCCACGGAAACAGACTCAGCTTCCAGC
ATGTTGTCGGACGCGATTTCCTTGTACCTCACCTTAAACGGGGGCTGGGA
GCCTCTGCACATCCACACCCTGTATCCGTGCGTGTCCACTTAACTAAAGA
AGCACTATTTCAGAAACGAGCCACTTCGCCTTAATACAGGCAGAAGTATT
TTGTTCACCCCTATCACCGCTTAGTGTGGAAAACGAGGACGTCTGCCTAT
CTCACGGTTTCTTGGTCGTTGTATTCTTTTTGTCTAGACTTTCTTTTTCC
TTTCATCACAGGATTGTTTCTCCGTAGCCGTAGCTACGTCCGTGGCAACT
TTGGTCTGATGCCCGTGTCCGCAATAATCGGTGGGTCGATGTAACATGAT
ATATATATATATATATATAAACATTTGCCGACAGCCCATCTCTCGACCCC
TGCTTGCTAAGCACACAAATTGCGCGCTTAGCGAAGATCCAATGCGCCGC
GAAGCAATCGTCACAGTTCCCAAAACTCTTGTGTTTGTTGATCCTGAACC
CGCTCTGTTCTCACCCCCGCCCTGCTTTGTCGGGGTCGCCTAGATCTAGA
TGACGTGAACGTCCATCACACCGGCGGAATCAACAATCACGTCGGTAGCG
GGCGGACTATCGGGGGGGTCACCGTCGGGGTGGGAGGAGAGTCGTTGGGC
ATCACGAATTCTGACAATGGCCGCAACCACGGGCCGGACAACAACGGTGT
GCTGTTGCAAGTAGGCAGTAGCATGCTTCACAACGGAGCAGGTGTGGGCA
CCCACACGTCACCCGCAGGTGGCCAGCAGCAGCAGCTGTCGCCGGCACCT
CCACCGCCCTCTTCCTGGGCGGCAAAGGTACGTGCTGGGCTGGGCTCGGA
GAACAGCCCCACCTTGGGAGCGGGCGGCGGCGGGACGGTGGCCGCCGGAC
TGGGGAGTATTGGGGATATGGCTTCTTCGTCGGAAGAAATTGACTCCAAC
ACTGCTACGCGGAGCTTAAGTTTCGGGCAGCTTTCTGGCGCTATGGGACC
GGGACCTGGACCCGTGCACGGGTTGAGCATGGAGGCGGGGGGTATGCCTT
CAATGGGAGCGGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig2799:964..6077-

>mRNA_H-paniculata_contig2799.7647.1 ID=mRNA_H-paniculata_contig2799.7647.1|Name=mRNA_H-paniculata_contig2799.7647.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1374bp|location=Sequence derived from alignment at H-paniculata_contig2799:964..6077- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAAACAGCGAAGTGCACACGGATCGCGCCGATCACGTCCTTGGTACAGG
ACCGTCCTACCCGACAAACAGCGAAGTGCACACGGATCGCGCCGATCACG
TCCTTGGTACAGGACCGTCCTACCCGGCACGCGCTATCTGGCGGGCGATG
CTGGGCGTGGGATCGGCAATGACGCTCAACTATGCTGATCACCAAGCCTT
CGGGGGATTGAACCAACTAGGTTTGGATGGCACGCGCTATCTGGCGGGCG
ATGCTGGGCGTGGGATCGGCAATGACGCTCAACTATGCTGATCACCAAGC
CTTCGGGGGATTGAACCAACTAGGTTTGGATGATCTAGATGACGTGAACG
TCCATCACACCGGCGGAATCAACAATCACGTCGGTAGCGGGCGGACTATC
GGGGGGGTCACCGTCGGGGTGGGAGGAGAGTCGTTGGGCATCACGAATTC
TGACAATGGCCGCAACCACGGGCCGGACAACAACGGTGTGCTGTTGCAAG
TAGGCAGTAGCATGCTTCACAACGGAGCAGGTGTGGGCACCCACACGTCA
CCCGCAGGTGGCCAGCAGCAGCAGCTGTCGCCGGCACCTCCACCGCCCTC
TTCCTGGGCGGCAAAGGTACGTGCTGGGCTGGGCTCGGAGAACAGCCCCA
CCTTGGGAGCGGGCGGCGGCGGGACGGTGGCCGCCGGACTGGGGAGTATT
GGGGATATGGCTTCTTCGTCGGAAGAAATTGACTCCAACACTGCTACGCG
GAGCTTAAGTTTCGGGCAGCTTTCTGGCGCTATGGGACCGGGACCTGGAC
CCGTGCACGGGTTGAGCATGGAGGCGGGGGGTATGCCTTCAATGGGAGCG
GGTATCTAGATGACGTGAACGTCCATCACACCGGCGGAATCAACAATCAC
GTCGGTAGCGGGCGGACTATCGGGGGGGTCACCGTCGGGGTGGGAGGAGA
GTCGTTGGGCATCACGAATTCTGACAATGGCCGCAACCACGGGCCGGACA
ACAACGGTGTGCTGTTGCAAGTAGGCAGTAGCATGCTTCACAACGGAGCA
GGTGTGGGCACCCACACGTCACCCGCAGGTGGCCAGCAGCAGCAGCTGTC
GCCGGCACCTCCACCGCCCTCTTCCTGGGCGGCAAAGGTACGTGCTGGGC
TGGGCTCGGAGAACAGCCCCACCTTGGGAGCGGGCGGCGGCGGGACGGTG
GCCGCCGGACTGGGGAGTATTGGGGATATGGCTTCTTCGTCGGAAGAAAT
TGACTCCAACACTGCTACGCGGAGCTTAAGTTTCGGGCAGCTTTCTGGCG
CTATGGGACCGGGACCTGGACCCGTGCACGGGTTGAGCATGGAGGCGGGG
GGTATGCCTTCAATGGGAGCGGGT
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