mRNA_H-paniculata_contig27980.7646.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig27980.7646.1
Unique NamemRNA_H-paniculata_contig27980.7646.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig27980.7646.1 vs. uniprot
Match: A0A6H5K164_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K164_9PHAE)

HSP 1 Score: 197 bits (502), Expect = 5.190e-56
Identity = 91/198 (45.96%), Postives = 137/198 (69.19%), Query Frame = 1 
Query:    1 KALYGLKQAGRMWSKRLVEVLVNNVGMTQSKSNPCVFRLEKRGVVDMILCVHVDDVIVTGRSVECDSLFAALGAEFQTTR-GELKWYLGCAFWRDIVRGVVRITQRTFVDTVIKRFDVETKSNLPASQAADLGPRREDEELSDKPVRSAVGSLIWLSGMTKPNIASEV*AVARQAHNPTDRHWKAVVKIMSYLKSTKD 591
            +A+YGLKQ+GR W     + LV N G  Q K++PCVFR     VV MI+ ++VDD++V G   +C+ L A+L  +F T   GE +W+ GCA  RD+  G +RI+Q  ++D++++RFDV++ S +PA+  ADLGP+REDEE  + PVR A+GS++W+S  ++P+++  V AVAR AH P  RHW A+ KI+ ++K T+D
Sbjct:  518 RAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGFMKGTRD 714
[Close]
BLAST of mRNA_H-paniculata_contig27980.7646.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 200 bits (509), Expect = 5.810e-56
Identity = 93/198 (46.97%), Postives = 137/198 (69.19%), Query Frame = 1 
Query:    1 KALYGLKQAGRMWSKRLVEVLVNNVGMTQSKSNPCVFRLEKRGVVDMILCVHVDDVIVTGRSVECDSLFAALGAEFQTTR-GELKWYLGCAFWRDIVRGVVRITQRTFVDTVIKRFDVETKSNLPASQAADLGPRREDEELSDKPVRSAVGSLIWLSGMTKPNIASEV*AVARQAHNPTDRHWKAVVKIMSYLKSTKD 591
            +A+YGLKQ+GR W     + LV N G  Q K++PCVFR     VV MI+ ++VDD++V G   +C+ L A+L  +F T   GE +W+ GCA  RD+  G +RI+Q  ++D++++RFDV++ S +PA+  ADLGP+REDEE  + PVR A+GS++W+S  ++P+++  V AVAR AH P  RHW A+ KI+ YLK T+D
Sbjct:  883 RAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRD 1079
[Close]
BLAST of mRNA_H-paniculata_contig27980.7646.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 200 bits (509), Expect = 6.040e-56
Identity = 93/198 (46.97%), Postives = 137/198 (69.19%), Query Frame = 1 
Query:    1 KALYGLKQAGRMWSKRLVEVLVNNVGMTQSKSNPCVFRLEKRGVVDMILCVHVDDVIVTGRSVECDSLFAALGAEFQTTR-GELKWYLGCAFWRDIVRGVVRITQRTFVDTVIKRFDVETKSNLPASQAADLGPRREDEELSDKPVRSAVGSLIWLSGMTKPNIASEV*AVARQAHNPTDRHWKAVVKIMSYLKSTKD 591
            +A+YGLKQ+GR W     + LV N G  Q K++PCVFR     VV MI+ ++VDD++V G   +C+ L A+L  +F T   GE +W+ GCA  RD+  G +RI+Q  ++D++++RFDV++ S +PA+  ADLGP+REDEE  + PVR A+GS++W+S  ++P+++  V AVAR AH P  RHW A+ KI+ YLK T+D
Sbjct: 1262 RAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRD 1458
[Close]
BLAST of mRNA_H-paniculata_contig27980.7646.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 200 bits (509), Expect = 6.060e-56
Identity = 93/198 (46.97%), Postives = 137/198 (69.19%), Query Frame = 1 
Query:    1 KALYGLKQAGRMWSKRLVEVLVNNVGMTQSKSNPCVFRLEKRGVVDMILCVHVDDVIVTGRSVECDSLFAALGAEFQTTR-GELKWYLGCAFWRDIVRGVVRITQRTFVDTVIKRFDVETKSNLPASQAADLGPRREDEELSDKPVRSAVGSLIWLSGMTKPNIASEV*AVARQAHNPTDRHWKAVVKIMSYLKSTKD 591
            +A+YGLKQ+GR W     + LV N G  Q K++PCVFR     VV MI+ ++VDD++V G   +C+ L A+L  +F T   GE +W+ GCA  RD+  G +RI+Q  ++D++++RFDV++ S +PA+  ADLGP+REDEE  + PVR A+GS++W+S  ++P+++  V AVAR AH P  RHW A+ KI+ YLK T+D
Sbjct: 1282 RAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRD 1478
[Close]
BLAST of mRNA_H-paniculata_contig27980.7646.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 200 bits (509), Expect = 6.080e-56
Identity = 93/198 (46.97%), Postives = 137/198 (69.19%), Query Frame = 1 
Query:    1 KALYGLKQAGRMWSKRLVEVLVNNVGMTQSKSNPCVFRLEKRGVVDMILCVHVDDVIVTGRSVECDSLFAALGAEFQTTR-GELKWYLGCAFWRDIVRGVVRITQRTFVDTVIKRFDVETKSNLPASQAADLGPRREDEELSDKPVRSAVGSLIWLSGMTKPNIASEV*AVARQAHNPTDRHWKAVVKIMSYLKSTKD 591
            +A+YGLKQ+GR W     + LV N G  Q K++PCVFR     VV MI+ ++VDD++V G   +C+ L A+L  +F T   GE +W+ GCA  RD+  G +RI+Q  ++D++++RFDV++ S +PA+  ADLGP+REDEE  + PVR A+GS++W+S  ++P+++  V AVAR AH P  RHW A+ KI+ YLK T+D
Sbjct: 1425 RAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRD 1621
[Close]
BLAST of mRNA_H-paniculata_contig27980.7646.1 vs. uniprot
Match: A0A6H5JQN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN6_9PHAE)

HSP 1 Score: 197 bits (502), Expect = 1.600e-55
Identity = 92/198 (46.46%), Postives = 137/198 (69.19%), Query Frame = 1 
Query:    1 KALYGLKQAGRMWSKRLVEVLVNNVGMTQSKSNPCVFRLEKRGVVDMILCVHVDDVIVTGRSVECDSLFAALGAEFQTTR-GELKWYLGCAFWRDIVRGVVRITQRTFVDTVIKRFDVETKSNLPASQAADLGPRREDEELSDKPVRSAVGSLIWLSGMTKPNIASEV*AVARQAHNPTDRHWKAVVKIMSYLKSTKD 591
            +A+YGLKQ+GR W     + LV N G  Q K++PCVFR     VV MI+ ++VDD++V G   +C+ L A+L  +F T   GE +W+ GCA  RD+  G +RI+Q  ++D++++RFDV++ S +PA+  ADLGP+RED++  + PVR AVGS++W+S  ++P+++  V AVAR AH P  RHW A+ KI+ YLK T+D
Sbjct:  474 RAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDDKGGEWPVREAVGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRD 670
[Close]
BLAST of mRNA_H-paniculata_contig27980.7646.1 vs. uniprot
Match: A0A6H5JQW4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQW4_9PHAE)

HSP 1 Score: 199 bits (505), Expect = 2.010e-55
Identity = 92/198 (46.46%), Postives = 136/198 (68.69%), Query Frame = 1 
Query:    1 KALYGLKQAGRMWSKRLVEVLVNNVGMTQSKSNPCVFRLEKRGVVDMILCVHVDDVIVTGRSVECDSLFAALGAEFQTTR-GELKWYLGCAFWRDIVRGVVRITQRTFVDTVIKRFDVETKSNLPASQAADLGPRREDEELSDKPVRSAVGSLIWLSGMTKPNIASEV*AVARQAHNPTDRHWKAVVKIMSYLKSTKD 591
            +A+YGLKQ+GR W     + LV N G  Q K++PCVFR     VV MI+ ++VDD++V G   +C+ L A+L  +F T   GE +W+ GCA  RD+  G +RI+Q  ++D++++RFDV++ S +PA+  ADLGP+REDEE  + PVR A+GS++W+S  ++P+++    AVAR AH P  RHW A+ KI+ YLK T+D
Sbjct:  992 RAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVRKAIGSMMWVSTFSRPDVSFAARAVARHAHAPAKRHWDAIQKILGYLKGTRD 1188
[Close]
BLAST of mRNA_H-paniculata_contig27980.7646.1 vs. uniprot
Match: A0A6H5JYF4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYF4_9PHAE)

HSP 1 Score: 189 bits (481), Expect = 2.070e-55
Identity = 92/198 (46.46%), Postives = 133/198 (67.17%), Query Frame = 1 
Query:    1 KALYGLKQAGRMWSKRLVEVLVNNVGMTQSKSNPCVFRLEKRGVVDMILCVHVDDVIVTGRSVECDSLFAALGAEFQTTR-GELKWYLGCAFWRDIVRGVVRITQRTFVDTVIKRFDVETKSNLPASQAADLGPRREDEELSDKPVRSAVGSLIWLSGMTKPNIASEV*AVARQAHNPTDRHWKAVVKIMSYLKSTKD 591
            +A+YGLKQ+GR W       LV N G  Q K++PCVFR     VV MI+ ++VDD++V G   +C+ L A+L  +F TT  GE +W  GCA  RD+  G + I+Q  ++D+++KRFDV++   +PA+  ADLGP+REDEE  + PVR A+GS++W+S  ++P+++  V AVAR AH P  RHW A+ KI+ YL  T+D
Sbjct:   41 RAIYGLKQSGRQWY-HAANTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTTNPGECQWLDGCAIVRDVEAGTLGISQTAYIDSMVKRFDVQSTYRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARLAHAPAKRHWDAIQKILGYLTETRD 236
[Close]
BLAST of mRNA_H-paniculata_contig27980.7646.1 vs. uniprot
Match: A0A6H5K616_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K616_9PHAE)

HSP 1 Score: 187 bits (475), Expect = 2.830e-55
Identity = 87/198 (43.94%), Postives = 131/198 (66.16%), Query Frame = 1 
Query:    1 KALYGLKQAGRMWSKRLVEVLVNNVGMTQSKSNPCVFRLEKRGVVDMILCVHVDDVIVTGRSVECDSLFAALGAEFQTTR-GELKWYLGCAFWRDIVRGVVRITQRTFVDTVIKRFDVETKSNLPASQAADLGPRREDEELSDKPVRSAVGSLIWLSGMTKPNIASEV*AVARQAHNPTDRHWKAVVKIMSYLKSTKD 591
            +A+YGLKQ+GR W     + LV N G  Q K++ CVFR     VV MI+ ++VDD++V G   +C+ L A+L  +F T   GE +W+ GCA  R +  G +RI+Q  ++D+++KRF+ ++ S +PAS   DLGP+R+DE   + PVR A+GS++W+S  ++P+++  V AVA  AH P  RHW A+ KI+ YLK T+D
Sbjct:   64 RAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADTCVFRKMADEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECEWFDGCAIERGVEAGTLRISQTAYIDSMVKRFEAQSTSLIPASPGVDLGPKRDDENGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVAHHAHAPAKRHWDAIQKILGYLKGTRD 260
[Close]
BLAST of mRNA_H-paniculata_contig27980.7646.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE)

HSP 1 Score: 196 bits (498), Expect = 3.800e-55
Identity = 91/198 (45.96%), Postives = 135/198 (68.18%), Query Frame = 1 
Query:    1 KALYGLKQAGRMWSKRLVEVLVNNVGMTQSKSNPCVFRLEKRGVVDMILCVHVDDVIVTGRSVECDSLFAALGAEFQTTR-GELKWYLGCAFWRDIVRGVVRITQRTFVDTVIKRFDVETKSNLPASQAADLGPRREDEELSDKPVRSAVGSLIWLSGMTKPNIASEV*AVARQAHNPTDRHWKAVVKIMSYLKSTKD 591
            +A+YGLKQ+GR W     + LV N G  Q K++PCVFR     VV MI+ ++VDD++V G   +C+ L A+L  +F T    E +W+ GCA  RD+  G +RI+Q  ++D+++KRFDV++ S +PAS   DLGP+R+DE+  + PVR A+GS++W+S  ++P+++  V AVAR AH P  RHW A+ KI+ YLK T+D
Sbjct:  437 RAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLSKKFPTKNLEECQWFDGCAIERDVETGTLRISQTAYIDSMVKRFDVQSTSRIPASPGVDLGPKRDDEKGGEWPVREAIGSIMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRD 633
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27980.7646.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K164_9PHAE5.190e-5645.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSG8_9PHAE5.810e-5646.97Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE6.040e-5646.97Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE6.060e-5646.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE6.080e-5646.97Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5JQN6_9PHAE1.600e-5546.46Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JQW4_9PHAE2.010e-5546.46Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JYF4_9PHAE2.070e-5546.46Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K616_9PHAE2.830e-5543.94Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JC10_9PHAE3.800e-5545.96Reverse transcriptase Ty1/copia-type domain-contai... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig27980contigH-paniculata_contig27980:2642..3232 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score78.2
Seed ortholog evalue3.9e-12
Seed eggNOG ortholog5297.GMQ_23762T0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs2YC45@29000,38DPC@33154,3NUZ7@4751,3UY7N@5204,COG0141@1,COG2801@1,KOG0017@2759,KOG4439@2759
COG Functional cat.L
Best tax levelPucciniomycotina
Best eggNOG OGNA|NA|NA
Exons1
Model size591
Cds size471
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig27980.7646.1prot_H-paniculata_contig27980.7646.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig27980 2729..3199 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929847.1695225-UTR-H-paniculata_contig27980:2641..27281622929847.1695225-UTR-H-paniculata_contig27980:2641..2728Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig27980 2642..2728 -
1691481037.379914-UTR-H-paniculata_contig27980:2641..27281691481037.379914-UTR-H-paniculata_contig27980:2641..2728Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig27980 2642..2728 -
1622929847.2001047-UTR-H-paniculata_contig27980:3199..32321622929847.2001047-UTR-H-paniculata_contig27980:3199..3232Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig27980 3200..3232 -
1691481037.3965774-UTR-H-paniculata_contig27980:3199..32321691481037.3965774-UTR-H-paniculata_contig27980:3199..3232Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig27980 3200..3232 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929847.1871116-CDS-H-paniculata_contig27980:2728..31991622929847.1871116-CDS-H-paniculata_contig27980:2728..3199Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27980 2729..3199 -
1691481037.388814-CDS-H-paniculata_contig27980:2728..31991691481037.388814-CDS-H-paniculata_contig27980:2728..3199Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27980 2729..3199 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig27980.7646.1

>prot_H-paniculata_contig27980.7646.1 ID=prot_H-paniculata_contig27980.7646.1|Name=mRNA_H-paniculata_contig27980.7646.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=157bp
MWSKRLVEVLVNNVGMTQSKSNPCVFRLEKRGVVDMILCVHVDDVIVTGR
SVECDSLFAALGAEFQTTRGELKWYLGCAFWRDIVRGVVRITQRTFVDTV
IKRFDVETKSNLPASQAADLGPRREDEELSDKPVRSAVGSLIWLSGMTKP
NIASEV*
back to top

mRNA from alignment at H-paniculata_contig27980:2642..3232-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig27980.7646.1 ID=mRNA_H-paniculata_contig27980.7646.1|Name=mRNA_H-paniculata_contig27980.7646.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=591bp|location=Sequence derived from alignment at H-paniculata_contig27980:2642..3232- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGCTCTGTATGGGCTCAAGCAGGCAGGACGGATGTGGTCAAAGCGCCT
TGTAGAAGTACTCGTAAACAACGTCGGCATGACGCAATCCAAGTCTAACC
CTTGTGTGTTTAGGCTGGAGAAACGTGGGGTAGTAGATATGATTCTGTGT
GTTCATGTAGATGATGTAATTGTTACTGGTAGAAGTGTGGAGTGCGATTC
CCTGTTTGCGGCGTTGGGGGCGGAGTTCCAAACTACGAGAGGCGAGCTCA
AGTGGTACCTGGGTTGCGCATTTTGGCGTGACATAGTGAGGGGAGTTGTC
CGCATCACACAACGGACATTCGTTGATACTGTCATTAAACGTTTTGACGT
GGAAACCAAGTCTAACCTTCCTGCGTCTCAGGCGGCAGATCTTGGGCCTA
GGAGGGAGGATGAGGAGTTGTCTGACAAGCCTGTGCGCTCGGCTGTTGGG
AGTTTAATATGGTTAAGTGGTATGACGAAACCCAACATAGCCAGTGAAGT
ATAGGCAGTAGCGAGGCAAGCCCACAATCCGACGGATAGGCACTGGAAAG
CAGTGGTAAAGATAATGTCGTATCTCAAGAGTACGAAAGAC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig27980:2642..3232-

>mRNA_H-paniculata_contig27980.7646.1 ID=mRNA_H-paniculata_contig27980.7646.1|Name=mRNA_H-paniculata_contig27980.7646.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=942bp|location=Sequence derived from alignment at H-paniculata_contig27980:2642..3232- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGGTCAAAGCGCCTTGTAGAAGTACTCGTAAACAACGTCGGCATGAC
GCAATCCAAGTCTAACCCTTGTGTGTTTAGGCTGGAGAAACGTGGGGTAG
TAGATATGATTCTGTGTGTTCATGTAGATGATGTAATTGTTACTGGTAGA
AGTGTGGAGTGCGATTCCCTGTTTGCGGCGTTGGGGGCGGAGTTCCAAAC
TACGAGAGGCGAGCTCAAGTGGTACCTGGGTTGCGCATTTTGGCGTGACA
TAGTGAGGGGAGTTGTCCGCATCACACAACGGACATTCGTTGATACTGTC
ATTAAACGTTTTGACGTGGAAACCAAGTCTAACCTTCCTGCGTCTCAGGC
GGCAGATCTTGGGCCTAGGAGGGAGGATGAGGAGTTGTCTGACAAGCCTG
TGCGCTCGGCTGTTGGGAGTTTAATATGGTTAAGTGGTATGACGAAACCC
AACATAGCCAGTGAAGTATAGATGTGGTCAAAGCGCCTTGTAGAAGTACT
CGTAAACAACGTCGGCATGACGCAATCCAAGTCTAACCCTTGTGTGTTTA
GGCTGGAGAAACGTGGGGTAGTAGATATGATTCTGTGTGTTCATGTAGAT
GATGTAATTGTTACTGGTAGAAGTGTGGAGTGCGATTCCCTGTTTGCGGC
GTTGGGGGCGGAGTTCCAAACTACGAGAGGCGAGCTCAAGTGGTACCTGG
GTTGCGCATTTTGGCGTGACATAGTGAGGGGAGTTGTCCGCATCACACAA
CGGACATTCGTTGATACTGTCATTAAACGTTTTGACGTGGAAACCAAGTC
TAACCTTCCTGCGTCTCAGGCGGCAGATCTTGGGCCTAGGAGGGAGGATG
AGGAGTTGTCTGACAAGCCTGTGCGCTCGGCTGTTGGGAGTTTAATATGG
TTAAGTGGTATGACGAAACCCAACATAGCCAGTGAAGTATAG
back to top