mRNA_H-paniculata_contig27979.7644.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig27979.7644.1
Unique NamemRNA_H-paniculata_contig27979.7644.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig27979.7644.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 4.600e-22
Identity = 64/146 (43.84%), Postives = 81/146 (55.48%), Query Frame = 1
Query:    1 TKEARRECHDKLHTTMMQSGDDPEDFLFVMDGYRERLEEMEQPIPDERYEDIILRDLPAEYERVRIASCEKRDFNLADIRHMASTMYTDYLSRPNTASGGSDDGR-------RNHISCFFCGKRGHLKRDCTARNTGQGVTGEHKK 417
            TKEARR C  KL  T M+SG+DP DFL  MD  R RLE+M + IPDE YED++LR L  EY  +R  S + R F L +IR     MY D LSR +  SG S  GR        +++ C  C + GH   +C     G+G   + KK
Sbjct:   75 TKEARRACRYKLFHTTMKSGEDPSDFLAKMDDLRLRLEDMGEKIPDESYEDVLLRALSKEYYFIRQTSHKDRTFGLTEIRTTMVNMYIDELSRKS--SGPSVAGRGVAMSAESSNVQCRNCQEFGHYANECRKHGKGKGNRRQGKK 218          
BLAST of mRNA_H-paniculata_contig27979.7644.1 vs. uniprot
Match: A0A6H5JXA1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXA1_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 3.200e-6
Identity = 36/134 (26.87%), Postives = 66/134 (49.25%), Query Frame = 1
Query:    1 TKEARRECHDKLHTTMMQSGDDPEDFLFVMDGYRERLEEMEQPIPDERYEDIILRDLPAEYERVRIASCEKRDFNLADIRHMASTMYTDYLSRPNTASGGSDDGRRNHIS-------CFFCGKRGHLKRDCTAR 381
            T E  R   D L  T+M+ G++P+DF       R +LE+M + I D R++DI ++    +Y+ +++       F++  ++     ++ D   R  T   G   GR   ++       CF C + GH++R+C+ R
Sbjct:  128 TDEVIRAKLDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTK--GQIAGRGFAMATKTSGPICFECNEPGHVRRNCSNR 259          
BLAST of mRNA_H-paniculata_contig27979.7644.1 vs. uniprot
Match: A0A6H5JUN9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN9_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 3.410e-6
Identity = 37/134 (27.61%), Postives = 66/134 (49.25%), Query Frame = 1
Query:    1 TKEARRECHDKLHTTMMQSGDDPEDFLFVMDGYRERLEEMEQPIPDERYEDIILRDLPAEYERVRIASCEKRDFNLADIRHMASTMYTDYLSRPNTASGGSDDGRRNHIS-------CFFCGKRGHLKRDCTAR 381
            T EA R   D L  T+M+ G++P+DF       R +LE+M + I D R++DI ++    +Y+ +++       F++  ++     ++ D   R  T   G   GR   ++       CF C + GH++R+C  R
Sbjct:  147 TDEAIRAELDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTK--GQIAGRGFAMATKTSGPICFECNEPGHVRRNCPNR 278          
BLAST of mRNA_H-paniculata_contig27979.7644.1 vs. uniprot
Match: A0A6H5KN28_9PHAE (Uncharacterized protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN28_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 8.150e-6
Identity = 36/134 (26.87%), Postives = 65/134 (48.51%), Query Frame = 1
Query:    1 TKEARRECHDKLHTTMMQSGDDPEDFLFVMDGYRERLEEMEQPIPDERYEDIILRDLPAEYERVRIASCEKRDFNLADIRHMASTMYTDYLSRPNTASGGSDDGRRNHIS-------CFFCGKRGHLKRDCTAR 381
            T E  R   D L  T+M+ G++P+DF       R +LE+M + I D R++DI ++    +Y+ +++       F++  ++     ++ D   R  T   G   GR   ++       CF C + GH++R+C  R
Sbjct:  128 TDEVIRAKLDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTK--GQIAGRGFAMATKTSGPICFECNEPGHVRRNCPNR 259          
BLAST of mRNA_H-paniculata_contig27979.7644.1 vs. uniprot
Match: A0A6H5KJB9_9PHAE (Uncharacterized protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJB9_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 8.320e-6
Identity = 36/134 (26.87%), Postives = 65/134 (48.51%), Query Frame = 1
Query:    1 TKEARRECHDKLHTTMMQSGDDPEDFLFVMDGYRERLEEMEQPIPDERYEDIILRDLPAEYERVRIASCEKRDFNLADIRHMASTMYTDYLSRPNTASGGSDDGRRNHIS-------CFFCGKRGHLKRDCTAR 381
            T E  R   D L  T+M+ G++P+DF       R +LE+M + I D R++DI ++    +Y+ +++       F++  ++     ++ D   R  T   G   GR   ++       CF C + GH++R+C  R
Sbjct:  128 TDEVIRAKLDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTK--GQIAGRGFAMATKTSGPICFECNEPGHVRRNCPNR 259          
BLAST of mRNA_H-paniculata_contig27979.7644.1 vs. uniprot
Match: A0A6H5K3T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3T5_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 8.630e-6
Identity = 36/134 (26.87%), Postives = 65/134 (48.51%), Query Frame = 1
Query:    1 TKEARRECHDKLHTTMMQSGDDPEDFLFVMDGYRERLEEMEQPIPDERYEDIILRDLPAEYERVRIASCEKRDFNLADIRHMASTMYTDYLSRPNTASGGSDDGRRNHIS-------CFFCGKRGHLKRDCTAR 381
            T E  R   D L  T+M+ G++P+DF       R +LE+M + I D R++DI ++    +Y+ +++       F++  ++     ++ D   R  T   G   GR   ++       CF C + GH++R+C  R
Sbjct:  128 TDEVIRAKLDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTK--GQIAGRGFAMATKTSGPICFECNEPGHVRRNCPNR 259          
BLAST of mRNA_H-paniculata_contig27979.7644.1 vs. uniprot
Match: A0A6H5L1Z9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Z9_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 8.630e-6
Identity = 36/134 (26.87%), Postives = 65/134 (48.51%), Query Frame = 1
Query:    1 TKEARRECHDKLHTTMMQSGDDPEDFLFVMDGYRERLEEMEQPIPDERYEDIILRDLPAEYERVRIASCEKRDFNLADIRHMASTMYTDYLSRPNTASGGSDDGRRNHIS-------CFFCGKRGHLKRDCTAR 381
            T E  R   D L  T+M+ G++P+DF       R +LE+M + I D R++DI ++    +Y+ +++       F++  ++     ++ D   R  T   G   GR   ++       CF C + GH++R+C  R
Sbjct:  128 TDEVIRAKLDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTK--GQIAGRGFAMATKTSGPICFECNEPGHVRRNCPNR 259          
BLAST of mRNA_H-paniculata_contig27979.7644.1 vs. uniprot
Match: A0A6H5JTQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTQ0_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 8.820e-6
Identity = 36/134 (26.87%), Postives = 65/134 (48.51%), Query Frame = 1
Query:    1 TKEARRECHDKLHTTMMQSGDDPEDFLFVMDGYRERLEEMEQPIPDERYEDIILRDLPAEYERVRIASCEKRDFNLADIRHMASTMYTDYLSRPNTASGGSDDGRRNHIS-------CFFCGKRGHLKRDCTAR 381
            T E  R   D L  T+M+ G++P+DF       R +LE+M + I D R++DI ++    +Y+ +++       F++  ++     ++ D   R  T   G   GR   ++       CF C + GH++R+C  R
Sbjct:  128 TDEVIRAKLDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTK--GQIAGRGFAMATKTSGPICFECNEPGHVRRNCPNR 259          
BLAST of mRNA_H-paniculata_contig27979.7644.1 vs. uniprot
Match: A0A6H5KHG5_9PHAE (Uncharacterized protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG5_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 8.820e-6
Identity = 36/134 (26.87%), Postives = 65/134 (48.51%), Query Frame = 1
Query:    1 TKEARRECHDKLHTTMMQSGDDPEDFLFVMDGYRERLEEMEQPIPDERYEDIILRDLPAEYERVRIASCEKRDFNLADIRHMASTMYTDYLSRPNTASGGSDDGRRNHIS-------CFFCGKRGHLKRDCTAR 381
            T E  R   D L  T+M+ G++P+DF       R +LE+M + I D R++DI ++    +Y+ +++       F++  ++     ++ D   R  T   G   GR   ++       CF C + GH++R+C  R
Sbjct:  128 TDEVIRAKLDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTK--GQIAGRGFAMATKTSGPICFECNEPGHVRRNCPNR 259          
BLAST of mRNA_H-paniculata_contig27979.7644.1 vs. uniprot
Match: A0A6H5K7P0_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7P0_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 9.910e-6
Identity = 36/134 (26.87%), Postives = 64/134 (47.76%), Query Frame = 1
Query:    1 TKEARRECHDKLHTTMMQSGDDPEDFLFVMDGYRERLEEMEQPIPDERYEDIILRDLPAEYERVRIASCEKRDFNLADIRHMASTMYTDYLSRPNTASGGSDDGRRNHIS-------CFFCGKRGHLKRDCTAR 381
            T E  R   D L  T+M+ G++P+DF       R +LE+M + I D R++DI ++    +Y+ +++       F +  ++     ++ D   R  T   G   GR   ++       CF C + GH++R+C  R
Sbjct:  128 TDEVIRAKLDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFEVQQMQATVRNIFLDERMRKRTK--GEIAGRVFAMATKTSGPICFECNEPGHVRRNCPNR 259          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27979.7644.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5K1J1_9PHAE4.600e-2243.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXA1_9PHAE3.200e-626.87CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JUN9_9PHAE3.410e-627.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KN28_9PHAE8.150e-626.87Uncharacterized protein (Fragment) n=3 Tax=Ectocar... [more]
A0A6H5KJB9_9PHAE8.320e-626.87Uncharacterized protein (Fragment) n=2 Tax=Ectocar... [more]
A0A6H5K3T5_9PHAE8.630e-626.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L1Z9_9PHAE8.630e-626.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTQ0_9PHAE8.820e-626.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHG5_9PHAE8.820e-626.87Uncharacterized protein n=11 Tax=Ectocarpus sp. CC... [more]
A0A6H5K7P0_9PHAE9.910e-626.87CCHC-type domain-containing protein (Fragment) n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig27979contigH-paniculata_contig27979:24..440 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size417
Cds size417
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929846.8884234-CDS-H-paniculata_contig27979:23..4401622929846.8884234-CDS-H-paniculata_contig27979:23..440Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27979 24..440 +
1691481037.2863686-CDS-H-paniculata_contig27979:23..4401691481037.2863686-CDS-H-paniculata_contig27979:23..440Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27979 24..440 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig27979.7644.1prot_H-paniculata_contig27979.7644.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig27979 24..440 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig27979.7644.1

>prot_H-paniculata_contig27979.7644.1 ID=prot_H-paniculata_contig27979.7644.1|Name=mRNA_H-paniculata_contig27979.7644.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=139bp
TKEARRECHDKLHTTMMQSGDDPEDFLFVMDGYRERLEEMEQPIPDERYE
DIILRDLPAEYERVRIASCEKRDFNLADIRHMASTMYTDYLSRPNTASGG
SDDGRRNHISCFFCGKRGHLKRDCTARNTGQGVTGEHKK
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mRNA from alignment at H-paniculata_contig27979:24..440+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig27979.7644.1 ID=mRNA_H-paniculata_contig27979.7644.1|Name=mRNA_H-paniculata_contig27979.7644.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=417bp|location=Sequence derived from alignment at H-paniculata_contig27979:24..440+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCAAGGAAGCACGGAGGGAGTGCCACGACAAACTCCACACAACAATGAT GCAGTCCGGAGATGATCCGGAAGATTTCCTCTTCGTCATGGATGGTTATC GCGAACGTTTGGAGGAAATGGAGCAACCCATACCTGACGAACGCTACGAG GACATTATTCTCCGAGACCTCCCCGCTGAGTACGAAAGGGTTCGTATTGC CAGTTGCGAGAAACGTGACTTCAATTTGGCGGACATTCGACACATGGCTA GCACCATGTACACCGACTACCTCTCCCGCCCGAATACCGCAAGTGGGGGA AGTGATGACGGCAGAAGGAACCACATATCATGTTTCTTTTGCGGGAAGCG AGGCCACCTGAAAAGAGACTGCACCGCTCGGAATACGGGCCAAGGGGTGA CCGGGGAACACAAAAAA
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Coding sequence (CDS) from alignment at H-paniculata_contig27979:24..440+

>mRNA_H-paniculata_contig27979.7644.1 ID=mRNA_H-paniculata_contig27979.7644.1|Name=mRNA_H-paniculata_contig27979.7644.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=834bp|location=Sequence derived from alignment at H-paniculata_contig27979:24..440+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCAAGGAAGCACGGAGGGAGTGCCACGACAAACTCCACACAACAATGAT
GCAGTCCGGAGATGATCCGGAAGATTTCCTCTTCGTCATGGATGGTTATC
GCGAACGTTTGGAGGAAATGGAGCAACCCATACCTGACGAACGCTACGAG
GACATTATTCTCCGAGACCTCCCCGCTGAGTACGAAAGGGTTCGTATTGC
CAGTTGCGAGAAACGTGACTTCAATTTGGCGGACATTCGACACATGGCTA
GCACCATGTACACCGACTACCTCTCCCGCCCGAATACCGCAAGTGGGGGA
AGTGATGACGGCAGAAGGAACCACATATCATGTTTCTTTTGCGGGAAGCG
AGGCCACCTGAAAAGAGACTGCACCGCTCGGAATACGGGCCAAGGGGTGA
CCGGGGAACACAAAAAAACCAAGGAAGCACGGAGGGAGTGCCACGACAAA
CTCCACACAACAATGATGCAGTCCGGAGATGATCCGGAAGATTTCCTCTT
CGTCATGGATGGTTATCGCGAACGTTTGGAGGAAATGGAGCAACCCATAC
CTGACGAACGCTACGAGGACATTATTCTCCGAGACCTCCCCGCTGAGTAC
GAAAGGGTTCGTATTGCCAGTTGCGAGAAACGTGACTTCAATTTGGCGGA
CATTCGACACATGGCTAGCACCATGTACACCGACTACCTCTCCCGCCCGA
ATACCGCAAGTGGGGGAAGTGATGACGGCAGAAGGAACCACATATCATGT
TTCTTTTGCGGGAAGCGAGGCCACCTGAAAAGAGACTGCACCGCTCGGAA
TACGGGCCAAGGGGTGACCGGGGAACACAAAAAA
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