prot_H-paniculata_contig27976.7643.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig27976.7643.1
Unique Nameprot_H-paniculata_contig27976.7643.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length46
Homology
BLAST of mRNA_H-paniculata_contig27976.7643.1 vs. uniprot
Match: D7FK42_ECTSI (DNA-directed DNA polymerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK42_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 3.250e-14
Identity = 38/46 (82.61%), Postives = 41/46 (89.13%), Query Frame = 0
Query:    1 AVGAAPASSAVPASQGIGAARIHAAWNQTSVRTGRLSCARPNLQQV 46
            A+GAA A SAVPASQG GAARIHA WNQTS RTGRLSC+RPNLQQ+
Sbjct:  868 ALGAAAAESAVPASQGAGAARIHATWNQTSARTGRLSCSRPNLQQM 913          
BLAST of mRNA_H-paniculata_contig27976.7643.1 vs. uniprot
Match: A0A6H5J5W8_9PHAE (POLAc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5W8_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 1.550e-13
Identity = 37/46 (80.43%), Postives = 39/46 (84.78%), Query Frame = 0
Query:    1 AVGAAPASSAVPASQGIGAARIHAAWNQTSVRTGRLSCARPNLQQV 46
            A+GAA A SAVPASQG GA RIHA WNQTS RTGRLSC+RPNLQQ 
Sbjct:  874 ALGAAAADSAVPASQGAGATRIHATWNQTSARTGRLSCSRPNLQQA 919          
BLAST of mRNA_H-paniculata_contig27976.7643.1 vs. uniprot
Match: A0A482SMN8_9ARCH (DNA-directed DNA polymerase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SMN8_9ARCH)

HSP 1 Score: 47.8 bits (112), Expect = 5.630e-5
Identity = 18/25 (72.00%), Postives = 22/25 (88.00%), Query Frame = 0
Query:   22 IHAAWNQTSVRTGRLSCARPNLQQV 46
            +H  WNQTSVRTGRLSCA+PN+Q +
Sbjct:  723 VHPIWNQTSVRTGRLSCAKPNMQNI 747          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27976.7643.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FK42_ECTSI3.250e-1482.61DNA-directed DNA polymerase n=1 Tax=Ectocarpus sil... [more]
A0A6H5J5W8_9PHAE1.550e-1380.43POLAc domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A482SMN8_9ARCH5.630e-572.00DNA-directed DNA polymerase n=1 Tax=archaeon TaxID... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.70.370coord: 23..46
e-value: 1.6E-5
score: 26.6
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 20..46

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig27976contigH-paniculata_contig27976:797..934 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig27976.7643.1mRNA_H-paniculata_contig27976.7643.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig27976 797..934 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig27976.7643.1 ID=prot_H-paniculata_contig27976.7643.1|Name=mRNA_H-paniculata_contig27976.7643.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=46bp
AVGAAPASSAVPASQGIGAARIHAAWNQTSVRTGRLSCARPNLQQV
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