mRNA_H-paniculata_contig27976.7643.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig27976.7643.1
Unique NamemRNA_H-paniculata_contig27976.7643.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig27976.7643.1 vs. uniprot
Match: D7FK42_ECTSI (DNA-directed DNA polymerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK42_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 3.250e-14
Identity = 38/46 (82.61%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:    1 AVGAAPASSAVPASQGIGAARIHAAWNQTSVRTGRLSCARPNLQQV 138
            A+GAA A SAVPASQG GAARIHA WNQTS RTGRLSC+RPNLQQ+
Sbjct:  868 ALGAAAAESAVPASQGAGAARIHATWNQTSARTGRLSCSRPNLQQM 913
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BLAST of mRNA_H-paniculata_contig27976.7643.1 vs. uniprot
Match: A0A6H5J5W8_9PHAE (POLAc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5W8_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 1.550e-13
Identity = 37/46 (80.43%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:    1 AVGAAPASSAVPASQGIGAARIHAAWNQTSVRTGRLSCARPNLQQV 138
            A+GAA A SAVPASQG GA RIHA WNQTS RTGRLSC+RPNLQQ 
Sbjct:  874 ALGAAAADSAVPASQGAGATRIHATWNQTSARTGRLSCSRPNLQQA 919
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BLAST of mRNA_H-paniculata_contig27976.7643.1 vs. uniprot
Match: A0A482SMN8_9ARCH (DNA-directed DNA polymerase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SMN8_9ARCH)

HSP 1 Score: 47.8 bits (112), Expect = 5.630e-5
Identity = 18/25 (72.00%), Postives = 22/25 (88.00%), Query Frame = 1 
Query:   64 IHAAWNQTSVRTGRLSCARPNLQQV 138
            +H  WNQTSVRTGRLSCA+PN+Q +
Sbjct:  723 VHPIWNQTSVRTGRLSCAKPNMQNI 747
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27976.7643.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FK42_ECTSI3.250e-1482.61DNA-directed DNA polymerase n=1 Tax=Ectocarpus sil... [more]
A0A6H5J5W8_9PHAE1.550e-1380.43POLAc domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A482SMN8_9ARCH5.630e-572.00DNA-directed DNA polymerase n=1 Tax=archaeon TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig27976contigH-paniculata_contig27976:797..934 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.7
Seed ortholog evalue1.2e-11
Seed eggNOG ortholog2880.D7FK42
Preferred namePOL1A
KEGG rclassRC02795
KEGG koko:K02335,ko:K02349
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03440,map00230,map00240,map01100,map03030,map03410,map03420,map03440
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.plastid DNA replication
EggNOG OGsCOG0749@1,KOG0950@2759
EC2.7.7.7
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Exons1
Model size138
Cds size138
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929846.8425968-CDS-H-paniculata_contig27976:796..9341622929846.8425968-CDS-H-paniculata_contig27976:796..934Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27976 797..934 -
1691481037.2760057-CDS-H-paniculata_contig27976:796..9341691481037.2760057-CDS-H-paniculata_contig27976:796..934Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27976 797..934 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig27976.7643.1prot_H-paniculata_contig27976.7643.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig27976 797..934 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig27976.7643.1

>prot_H-paniculata_contig27976.7643.1 ID=prot_H-paniculata_contig27976.7643.1|Name=mRNA_H-paniculata_contig27976.7643.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=46bp
AVGAAPASSAVPASQGIGAARIHAAWNQTSVRTGRLSCARPNLQQV
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mRNA from alignment at H-paniculata_contig27976:797..934-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig27976.7643.1 ID=mRNA_H-paniculata_contig27976.7643.1|Name=mRNA_H-paniculata_contig27976.7643.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=138bp|location=Sequence derived from alignment at H-paniculata_contig27976:797..934- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGTGGGCGCAGCTCCTGCAAGCAGCGCCGTGCCAGCAAGTCAGGGCAT
CGGAGCCGCGAGGATACACGCGGCCTGGAACCAGACCTCCGTCCGCACGG
GGCGTCTGAGTTGCGCCAGGCCTAACTTGCAGCAGGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig27976:797..934-

>mRNA_H-paniculata_contig27976.7643.1 ID=mRNA_H-paniculata_contig27976.7643.1|Name=mRNA_H-paniculata_contig27976.7643.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=276bp|location=Sequence derived from alignment at H-paniculata_contig27976:797..934- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGTGGGCGCAGCTCCTGCAAGCAGCGCCGTGCCAGCAAGTCAGGGCAT
CGGAGCCGCGAGGATACACGCGGCCTGGAACCAGACCTCCGTCCGCACGG
GGCGTCTGAGTTGCGCCAGGCCTAACTTGCAGCAGGTAGCGGTGGGCGCA
GCTCCTGCAAGCAGCGCCGTGCCAGCAAGTCAGGGCATCGGAGCCGCGAG
GATACACGCGGCCTGGAACCAGACCTCCGTCCGCACGGGGCGTCTGAGTT
GCGCCAGGCCTAACTTGCAGCAGGTA
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